Ggra6850.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6850.t1
Unique NameGgra6850.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Homology
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A2V3ILJ5 (Protein YciI n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILJ5_9FLOR)

HSP 1 Score: 280 bits (716), Expect = 2.380e-92
Identity = 133/197 (67.51%), Postives = 157/197 (79.70%), Query Frame = 0
Query:   44 MAASAPLFAAFCSDVPDSADKRAAARDAHIAWIKSESVATFFAGPVRDSHAHPFKGSLVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREWRCGMTSTPLPQLMFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGGANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVIDNVSPS 240
            M+AS PLFAAFC DV DSA KRA AR+AH+ +I+S+  ATFFAGP++ S   PF+ SL+I+ + DY  A+RK   DPY    VF ST +R+WRCGMT+TPLP  +F VWCVD+P+ LQLRA TR +HLQWWK + RKGIIGPFPC+GGANGTLIVCSGDSVDEVRQWAATDPY +A LF SVTVL  KNV+DNVS S
Sbjct:   41 MSASHPLFAAFCKDVADSAAKRANAREAHLQYIRSDEFATFFAGPLKQSPTSPFEASLIIIKSPDYNTAKRKFELDPYAEARVFESTHIRQWRCGMTNTPLPAQLFMVWCVDKPRSLQLRADTRAAHLQWWKLSHRKGIIGPFPCQGGANGTLIVCSGDSVDEVRQWAATDPYYKAQLFDSVTVLECKNVVDNVSHS 237          
BLAST of Ggra6850.t1 vs. uniprot
Match: R7QMH9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMH9_CHOCR)

HSP 1 Score: 180 bits (456), Expect = 2.650e-53
Identity = 96/195 (49.23%), Postives = 125/195 (64.10%), Query Frame = 0
Query:   50 LFAAFCSDVPDSADKRAAARDAHIAWIKSESVATFFAGPVR--DSHAHPFKGSLVIVAASDYEHA---QRKLAQDPYQTTGVFASTDLREWRCGMTST-PLPQLMFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGG--ANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVIDN 236
            L+AA C D P S+  RAA R AH+ WI ++     FAGP+   D+ + P  GSL+I+  S    A   +R L  DPY   G+F S D+R W CGM ST PLP  +F VWC+D+PQ   LR  TR +HL WW+ AGR G+IGPFP + G  A G+LIVC G+SV+EV QWA TDPY+ AGLF SV V ++   +++
Sbjct:    9 LYAARCVDKPSSSALRAATRPAHLDWIAAQESLFRFAGPLHPPDATSQPI-GSLLIMHGSPPASAASIERYLYDDPYAKAGLFESVDVRRWVCGMASTAPLPDNLFAVWCLDKPQSRALRKATRSAHLDWWRGAGRSGMIGPFPADDGDGAVGSLIVCEGESVEEVAQWAKTDPYSTAGLFDSVEVHSVLKAVED 202          
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A7S0G449 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G449_9RHOD)

HSP 1 Score: 144 bits (363), Expect = 7.020e-39
Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = 0
Query:   63 DKRAAARDAHIAWIKSESVATFFAGPVRDSHAHPFKGSLVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREWRCGMT-STPLPQLMFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCE--GGANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVIDN 236
            D RA  R  H+ WI +   A  FAGP+ D  + P  GSLVI  A D +  +   AQDPY + G+F     REW+      +PL   ++ + C D+    +LRA+ RP HL+WWK++GR G IGPFP     GA G++I+  G S DEVR+W+ +DPYN AG+F SV +  +  V+ N
Sbjct:   70 DLRAKTRPEHLDWIIASKRA-LFAGPMFDKASEPV-GSLVIAHAKDMKDVEEWNAQDPYTSVGLFEKQAFREWKMVYRPESPLVDPIYVIICSDKEDAKELRAEVRPKHLEWWKNSGRNGFIGPFPAADGSGAVGSMIITEGKSEDEVREWSKSDPYNAAGVFGSVEIYPMSTVLFN 244          
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A7S3EF78 (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EF78_9RHOD)

HSP 1 Score: 142 bits (357), Expect = 4.340e-38
Identity = 75/175 (42.86%), Postives = 100/175 (57.14%), Query Frame = 0
Query:   63 DKRAAARDAHIAWIKSESVATFFAGPVRDSHAHPFKGSLVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREWRCGMT-STPLPQLMFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCE--GGANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVI 234
            D RA  R  H+ WI +   A  FAGP+ D  A P  GSLVI  A D +  +   AQDPY + G+F     REW+       PL   ++ + C DR     LRA+ RP HL+WWK +GRKG IGPFP     GA G++I+  G S +EV  W+ +DPYN AG+F+SV +  +  V+
Sbjct:   61 DLRAQTRPEHLNWIVASKRA-LFAGPMFDKAAVPI-GSLVIARAKDMKDIEEWNAQDPYASVGMFERESFREWKMVYRPEAPLTDPIYVIICSDRDGAKDLRAEVRPKHLEWWKSSGRKGFIGPFPAADGSGAVGSMIITEGKSEEEVTDWSKSDPYNVAGVFESVEIYPMSTVL 233          
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A7S0EWI6 (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EWI6_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 3.280e-17
Identity = 50/136 (36.76%), Postives = 69/136 (50.74%), Query Frame = 0
Query:   99 GSLVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREWRCGMT---STPLPQLMFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIG----PFPCEGGANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTV 227
            G+L +V  S           DP+   G +AS     W        + P P   + V+C+D+P   +LR  TR +HL W  + GR  + G    P     G  GTL+  +GD ++EVR+WA  DPYNQAGLF+SV V
Sbjct:  198 GNLNVVKGSSLADVAAWGQGDPHDVVGAYASLTTHRWLRSPDPELNLPAPGPCYGVYCLDKPASSELREATRDAHLAWLAEGGRVHLGGALQSPLGEAVGNVGTLLFVNGDELEEVRRWATEDPYNQAGLFESVLV 333          
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A7S0LSA8 (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSA8_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 6.410e-17
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 0
Query:   99 GSLVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREW-RCGMTSTPLPQLM---FFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPC-EG---GANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLAL 230
            G++++  A + E     + +DP    G +  T L  W R        PQ+    + + C+D+     LRA+TR +HLQW  ++GR  + G     EG   G  GTL+V +G+ + EVRQWAA DPY QAGLF  V +  L
Sbjct:  204 GNVIVARAEEIEPLDEWMQEDPIGEAGGYEQTSLHRWLRSDDVKLNHPQVQGPSYLIHCLDKDGQGDLRARTREAHLQWLMESGRVHLGGALQSHEGEVAGNVGTLLVVNGEDLHEVRQWAAEDPYTQAGLFARVNIAPL 343          
BLAST of Ggra6850.t1 vs. uniprot
Match: YciI family protein n=1 Tax=Paracoccus amoyensis TaxID=2760093 RepID=UPI001658DC77 (YciI family protein n=1 Tax=Paracoccus amoyensis TaxID=2760093 RepID=UPI001658DC77)

HSP 1 Score: 77.0 bits (188), Expect = 9.210e-15
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0
Query:  148 MFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGGANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVI 234
            +F V C D+P  LQ+R  TR +HL + K++G   + GP   +G   G+L++   D +   + WAA DPY  AGLF+SV ++  K VI
Sbjct:    3 LFAVICRDKPGALQIRLDTRDTHLGYIKESGIVAMAGPLIEQGDMRGSLVIVEADDLAAAQNWAANDPYKAAGLFESVEIIEWKKVI 89          
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A6I2UQM8 (YciI family protein n=2 Tax=unclassified Paracoccus TaxID=246570 RepID=A0A6I2UQM8_9RHOB)

HSP 1 Score: 77.0 bits (188), Expect = 9.460e-15
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 0
Query:  148 MFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGII--GPFPCEGGANGTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVI 234
            +F + C D P  LQ R  TR  HL W   A R G++  GP   +G   G+L++  GDS+DEVR WAA DPY QAG+F SV ++  + VI
Sbjct:    4 LFALICRDAPDMLQTRLDTRERHLAWL--AQRPGVMVGGPMLQDGQPCGSLLIVEGDSLDEVRAWAAGDPYAQAGVFGSVEIVEWRKVI 90          
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A2D7G3V9 (YCII domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D7G3V9_9GAMM)

HSP 1 Score: 74.7 bits (182), Expect = 7.510e-14
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 0
Query:  147 LMFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGGAN--GTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVIDNVS 238
            +++ V C D P+  QLRA TRP HL +  D+ +    GPF  +      G+LIV   +S++E R++AA DPYNQAGLF+SV +   K VI   S
Sbjct:    1 MLYIVLCKDFPKSSQLRASTRPEHLNYL-DSFKIRYAGPFMSDTTEEMTGSLIVLDANSLEEARRFAANDPYNQAGLFESVEIKPFKQVIPGES 93          
BLAST of Ggra6850.t1 vs. uniprot
Match: A0A3N7GB93 (YciI family protein n=3 Tax=unclassified Paracoccus TaxID=246570 RepID=A0A3N7GB93_9RHOB)

HSP 1 Score: 73.6 bits (179), Expect = 1.950e-13
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 0
Query:  147 LMFFVWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGGAN-GTLIVCSGDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVI 234
            ++F   C D+P  L +R   RP+HL+W        I GP   EG    G++++   + ++  RQWAA DPY QAGLF+SV +   K VI
Sbjct:    1 MLFAFVCTDKPDALDIRRANRPAHLEWLDSTPGVYIAGPLLDEGQTPCGSILIVEHEDLEAARQWAAQDPYAQAGLFESVAIREWKKVI 89          
The following BLAST results are available for this feature:
BLAST of Ggra6850.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILJ52.380e-9267.51Protein YciI n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
R7QMH92.650e-5349.23Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0G4497.020e-3942.37Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3EF784.340e-3842.86Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A7S0EWI63.280e-1736.76Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A7S0LSA86.410e-1736.43Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
YciI family protein n=1 Tax=Paracoccus amoyensis TaxID=2760093 RepID=UPI001658DC779.210e-1540.23YciI family protein n=1 Tax=Paracoccus amoyensis T... [more]
A0A6I2UQM89.460e-1546.07YciI family protein n=2 Tax=unclassified Paracoccu... [more]
A0A2D7G3V97.510e-1443.62YCII domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A3N7GB931.950e-1339.33YciI family protein n=3 Tax=unclassified Paracoccu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.1060Dimeric alpha+beta barrelcoord: 50..142
e-value: 6.4E-21
score: 76.4
NoneNo IPR availableGENE3D3.30.70.1060Dimeric alpha+beta barrelcoord: 146..234
e-value: 7.0E-17
score: 63.3
NoneNo IPR availablePANTHERPTHR33606PROTEIN YCIIcoord: 45..140
coord: 146..234
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
IPR005545YCII-relatedPFAMPF03795YCIIcoord: 149..229
e-value: 1.3E-9
score: 38.3
coord: 50..136
e-value: 1.3E-8
score: 35.2
IPR011008Dimeric alpha-beta barrelSUPERFAMILY54909Dimeric alpha+beta barrelcoord: 148..231
IPR011008Dimeric alpha-beta barrelSUPERFAMILY54909Dimeric alpha+beta barrelcoord: 49..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:668687..669409 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6850.t1Ggra6850.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 668687..669409 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6850.t1 ID=Ggra6850.t1|Name=Ggra6850.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MAFVSPSPLRAFVGAAVVSPPASFVASCPRRRAAAAPSSSPVRMAASAPL
FAAFCSDVPDSADKRAAARDAHIAWIKSESVATFFAGPVRDSHAHPFKGS
LVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREWRCGMTSTPLPQLMFF
VWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGGANGTLIVCS
GDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVIDNVSPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005545YCII
IPR011008Dimeric_a/b-barrel