Ggra6850.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6850.t1
Unique NameGgra6850.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:668687..669409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1353537.TP2_05280
Preferred nameyciI
PFAMsYCII
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09780
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue3.74e-17
EggNOG OGsCOG2350@1|root,COG2350@2|Bacteria,1MZ9Z@1224|Proteobacteria,2UF4X@28211|Alphaproteobacteria,2XNN8@285107|Thioclava
DescriptionYCII-related domain
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6850Ggra6850Gracilaria gracilis GNS1m malegenetig00000056_pilon 668687..669409 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6850.t1.start1Ggra6850.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 668687..668689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6850.t1.CDS1Ggra6850.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 668687..669409 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6850.t1.exon1Ggra6850.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 668687..669409 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6850.t1.stop1Ggra6850.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 669407..669409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6850.t1Ggra6850.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 668687..669409 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6850.t1 ID=Ggra6850.t1|Name=Ggra6850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MAFVSPSPLRAFVGAAVVSPPASFVASCPRRRAAAAPSSSPVRMAASAPL
FAAFCSDVPDSADKRAAARDAHIAWIKSESVATFFAGPVRDSHAHPFKGS
LVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREWRCGMTSTPLPQLMFF
VWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGGANGTLIVCS
GDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVIDNVSPS*
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spliced messenger RNA

>Ggra6850.t1 ID=Ggra6850.t1|Name=Ggra6850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000056_pilon:668687..669409+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTCGTGTCGCCGTCGCCGCTGCGTGCGTTTGTTGGCGCCGCCGT
CGTCTCACCGCCGGCCTCCTTTGTCGCCAGCTGCCCGCGCCGACGCGCCG
CAGCCGCGCCTTCATCGTCCCCCGTGCGCATGGCGGCGTCCGCCCCGCTC
TTCGCCGCCTTTTGCTCCGACGTGCCCGACAGCGCCGACAAACGCGCCGC
CGCGCGCGACGCCCACATCGCCTGGATCAAGTCCGAGTCCGTCGCCACCT
TCTTCGCCGGCCCCGTCAGAGACTCGCACGCGCACCCGTTCAAGGGCTCG
CTCGTCATCGTCGCGGCGTCGGATTATGAGCACGCCCAGCGCAAACTCGC
GCAAGACCCGTACCAAACCACCGGCGTGTTTGCTAGCACCGACCTCAGGG
AGTGGCGATGCGGCATGACCAGTACCCCTCTTCCGCAGCTCATGTTCTTT
GTGTGGTGCGTCGATCGTCCGCAATGTCTGCAGTTGCGCGCTCAAACGCG
ACCCAGCCACTTGCAGTGGTGGAAGGACGCGGGTCGGAAGGGAATCATCG
GCCCGTTTCCGTGTGAGGGCGGTGCCAATGGTACGCTTATTGTCTGCAGC
GGCGACAGCGTGGATGAGGTGCGCCAATGGGCCGCCACAGACCCGTACAA
CCAGGCTGGTTTGTTTCAGAGTGTTACCGTGCTTGCACTCAAGAATGTCA
TTGACAATGTATCGCCTTCTTGA
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protein sequence of Ggra6850.t1

>Ggra6850.t1 ID=Ggra6850.t1|Name=Ggra6850.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MAFVSPSPLRAFVGAAVVSPPASFVASCPRRRAAAAPSSSPVRMAASAPL
FAAFCSDVPDSADKRAAARDAHIAWIKSESVATFFAGPVRDSHAHPFKGS
LVIVAASDYEHAQRKLAQDPYQTTGVFASTDLREWRCGMTSTPLPQLMFF
VWCVDRPQCLQLRAQTRPSHLQWWKDAGRKGIIGPFPCEGGANGTLIVCS
GDSVDEVRQWAATDPYNQAGLFQSVTVLALKNVIDNVSPS*
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mRNA from alignment at tig00000056_pilon:668687..669409+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6850.t1 ID=Ggra6850.t1|Name=Ggra6850.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000056_pilon:668687..669409+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTGTCGCCGTCGCCGCTGCGTGCGTTTGTTGGCGCCGCCGT
CGTCTCACCGCCGGCCTCCTTTGTCGCCAGCTGCCCGCGCCGACGCGCCG
CAGCCGCGCCTTCATCGTCCCCCGTGCGCATGGCGGCGTCCGCCCCGCTC
TTCGCCGCCTTTTGCTCCGACGTGCCCGACAGCGCCGACAAACGCGCCGC
CGCGCGCGACGCCCACATCGCCTGGATCAAGTCCGAGTCCGTCGCCACCT
TCTTCGCCGGCCCCGTCAGAGACTCGCACGCGCACCCGTTCAAGGGCTCG
CTCGTCATCGTCGCGGCGTCGGATTATGAGCACGCCCAGCGCAAACTCGC
GCAAGACCCGTACCAAACCACCGGCGTGTTTGCTAGCACCGACCTCAGGG
AGTGGCGATGCGGCATGACCAGTACCCCTCTTCCGCAGCTCATGTTCTTT
GTGTGGTGCGTCGATCGTCCGCAATGTCTGCAGTTGCGCGCTCAAACGCG
ACCCAGCCACTTGCAGTGGTGGAAGGACGCGGGTCGGAAGGGAATCATCG
GCCCGTTTCCGTGTGAGGGCGGTGCCAATGGTACGCTTATTGTCTGCAGC
GGCGACAGCGTGGATGAGGTGCGCCAATGGGCCGCCACAGACCCGTACAA
CCAGGCTGGTTTGTTTCAGAGTGTTACCGTGCTTGCACTCAAGAATGTCA
TTGACAATGTATCGCCTTCTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:668687..669409+

>Ggra6850.t1 ID=Ggra6850.t1|Name=Ggra6850.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000056_pilon:668687..669409+ (Gracilaria gracilis GNS1m male)
ATGGCGTTCGTGTCGCCGTCGCCGCTGCGTGCGTTTGTTGGCGCCGCCGT
CGTCTCACCGCCGGCCTCCTTTGTCGCCAGCTGCCCGCGCCGACGCGCCG
CAGCCGCGCCTTCATCGTCCCCCGTGCGCATGGCGGCGTCCGCCCCGCTC
TTCGCCGCCTTTTGCTCCGACGTGCCCGACAGCGCCGACAAACGCGCCGC
CGCGCGCGACGCCCACATCGCCTGGATCAAGTCCGAGTCCGTCGCCACCT
TCTTCGCCGGCCCCGTCAGAGACTCGCACGCGCACCCGTTCAAGGGCTCG
CTCGTCATCGTCGCGGCGTCGGATTATGAGCACGCCCAGCGCAAACTCGC
GCAAGACCCGTACCAAACCACCGGCGTGTTTGCTAGCACCGACCTCAGGG
AGTGGCGATGCGGCATGACCAGTACCCCTCTTCCGCAGCTCATGTTCTTT
GTGTGGTGCGTCGATCGTCCGCAATGTCTGCAGTTGCGCGCTCAAACGCG
ACCCAGCCACTTGCAGTGGTGGAAGGACGCGGGTCGGAAGGGAATCATCG
GCCCGTTTCCGTGTGAGGGCGGTGCCAATGGTACGCTTATTGTCTGCAGC
GGCGACAGCGTGGATGAGGTGCGCCAATGGGCCGCCACAGACCCGTACAA
CCAGGCTGGTTTGTTTCAGAGTGTTACCGTGCTTGCACTCAAGAATGTCA
TTGACAATGTATCGCCTTCTTGA
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