Ggra6842.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6842.t1
Unique NameGgra6842.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Homology
BLAST of Ggra6842.t1 vs. uniprot
Match: A0A2V3ISM9 (Pre-mRNA-splicing factor 38 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISM9_9FLOR)

HSP 1 Score: 318 bits (815), Expect = 9.750e-109
Identity = 160/197 (81.22%), Postives = 179/197 (90.86%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSALAL 197
            MANTTDE ALH+LGYDPQ+HIPPITRSSIH SP+WNRHLF VSVADLVPLAVSLS++S T GPMHTPSPFLCMLLKLLQLAPTT EISVYL QT FKYPR+LAAFYIRLMETPA V+RLLEPLLSD+RKLV R+ DV+  +  VS++ T+ IVHVDD++DALLT+RELFGIPLPRLPPRP+LV+TAQLS RKSALAL
Sbjct:    1 MANTTDEGALHRLGYDPQNHIPPITRSSIHRSPYWNRHLFGVSVADLVPLAVSLSYISGTQGPMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTHFKYPRILAAFYIRLMETPAAVHRLLEPLLSDYRKLVARSVDVAPFMPTVSTNGTFVIVHVDDIVDALLTQRELFGIPLPRLPPRPLLVETAQLSARKSALAL 197          
BLAST of Ggra6842.t1 vs. uniprot
Match: R7QB68 (Pre-mRNA-splicing factor 38 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB68_CHOCR)

HSP 1 Score: 175 bits (443), Expect = 2.440e-52
Identity = 102/196 (52.04%), Postives = 128/196 (65.31%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDT-AQLSPRKSAL 195
            MAN TD  ALH  G DPQ+ + P  R S++LS FWN   F V++AD+VPLA  L  +SA   P   P+PFLC+LLKLLQL+P   EI+V+L Q DFKY R+L AFY+RL   P  VY LLEPLL+D RK+VVR            +S  +AIVHVD++ID LL E  + GI LPRLPPR ++ ++  QL PR   L
Sbjct:    1 MANKTDTYALHSRGTDPQNLLEPSLRHSVYLSRFWNESCFGVTLADVVPLAARLDRISAVTAP---PTPFLCLLLKLLQLSPEEPEIAVFLTQNDFKYARLLGAFYVRLALPPPRVYALLEPLLADLRKIVVREG----------ASAEHAIVHVDELIDRLLREHLVVGITLPRLPPRHVVEESFVQLPPRPQLL 183          
BLAST of Ggra6842.t1 vs. uniprot
Match: M2XT21 (Pre-mRNA-splicing factor 38 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XT21_GALSU)

HSP 1 Score: 147 bits (371), Expect = 2.400e-40
Identity = 84/195 (43.08%), Postives = 113/195 (57.95%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSAL 195
            MAN TD  A+H  G+DPQ  I  ITR  I+   +W    F ++   LV  A  L+++   +GP+  P+PF+C++LKLLQL+P    I  YL Q  FKY   LAAFY RL+     VYR LEPL  DFRKL +R  +             Y ++HVD+ ID LL + ++  I LPRLP R +L++   L+PRKS L
Sbjct:    1 MANRTDPLAIHAHGFDPQFLIDKITREKIYQCAYWKAECFGLTAETLVDKAAELTYVGGLYGPLKKPTPFICLILKLLQLSPDKEIIHQYLQQKKFKYLTALAAFYWRLVGNGTDVYRWLEPLYEDFRKLRIRREN------------KYELIHVDECIDELLQKEDVCDIKLPRLPNRNVLMEDRLLAPRKSKL 183          
BLAST of Ggra6842.t1 vs. uniprot
Match: A0A2P2IFV2 (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IFV2_9CRUS)

HSP 1 Score: 137 bits (345), Expect = 1.280e-37
Identity = 78/182 (42.86%), Postives = 106/182 (58.24%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPML 182
            MANTTD +A +  G +PQ+ I  I R  I+ S +W  H FA++   +V  A+ L  +  T G    PS FLC+LLK+LQ+ P    I  Y+   D+KY R++ A Y+RL+  P  +Y  LEPLL D+RK+ VR  D             Y++ HVD++IDALLTE   F I LPRLP R +L
Sbjct:    7 MANTTDPAARNVHGTNPQYLIEKIVRMKIYDSMYWKEHCFALNAESMVDKAIELKAVGGTFGGNRKPSNFLCLLLKMLQIQPEKDIIIEYISNDDYKYVRMIGAVYLRLVGRPLDIYHYLEPLLHDYRKIRVRNPDGK-----------YSLTHVDEIIDALLTESHYFNITLPRLPARRVL 177          
BLAST of Ggra6842.t1 vs. uniprot
Match: A0A316ZBR8 (Pre-mRNA-splicing factor 38 n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZBR8_9BASI)

HSP 1 Score: 140 bits (354), Expect = 1.480e-37
Identity = 82/195 (42.05%), Postives = 119/195 (61.03%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSAL 195
            MAN T + AL+  G +PQH +  + R+ I+ SP+W  H FA++ A +VP+A  L ++  ++G    PSPFLC+LLKLLQL P  + I  Y+   +FKY R LAA Y+R+      VY +LEP+L+D+RKL  R  D+S          +Y I H+D+ +D+LLTE  +  + LPRL  R +L +   L+PR S L
Sbjct:    1 MANQTLKGALNVRGTNPQHLVEKVVRARIYDSPYWKEHCFALTAASIVPVAARLPYIGGSYGAQR-PSPFLCLLLKLLQLQPARAIILEYIAAPEFKYLRALAAMYVRMTFPSLEVYEVLEPMLNDYRKL--RWRDMSG---------SYRITHMDEFVDSLLTEERVADLILPRLTRRDVLEEGEGLAPRASRL 183          
BLAST of Ggra6842.t1 vs. uniprot
Match: A0A075AYX0 (Pre-mRNA-splicing factor 38 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AYX0_ROZAC)

HSP 1 Score: 136 bits (342), Expect = 2.290e-36
Identity = 80/195 (41.03%), Postives = 113/195 (57.95%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSAL 195
            MAN T   A    G DPQ  I  ITR+ I+ S +W  + F +++  LV  AV L H+    G  + P+PFLC++LK+LQLAPT   +  ++   D+KY R L  FY+RL+ +   +YR LEPLL+D+RKL +R  D S           Y I+H+D+ +D LLT+   F   LPR+  R +L +T QL+ R S L
Sbjct:    1 MANRTAVDAFQVHGVDPQFLIEKITRTRIYESQYWKENCFGLNIETLVDKAVKLDHIGGLFGT-NIPTPFLCLVLKMLQLAPTKDIVFEFVRNGDYKYVRALGVFYLRLVGSGLEIYRELEPLLADYRKLRLRNKDRS-----------YTIIHMDEFVDELLTQERTFDTILPRIVKRHVLAETGQLNFRTSLL 183          
BLAST of Ggra6842.t1 vs. uniprot
Match: A0A0L6VIQ5 (Pre-mRNA-splicing factor 38 n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VIQ5_9BASI)

HSP 1 Score: 137 bits (344), Expect = 2.510e-36
Identity = 87/198 (43.94%), Postives = 114/198 (57.58%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAV-SLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSALAL 197
            MANTT   AL   G +PQ  I  I RS I+ S +W    F ++   ++  AV  L++L++T      PSPF+C+LLKLLQL P    I  YL   +FKY R LAAFY+RL  TP  VY+ LEP+L D+RKL +R  D S           Y ++  D+ ID LLTE  +F + LPRL  R +L +   L PRKS LA+
Sbjct:    1 MANTTARGALSIHGTNPQFLIDKILRSRIYESEYWKESCFGLTAESIIDKAVFDLNYLASTFTANLRPSPFICLLLKLLQLQPEKEIILEYLRAEEFKYLRALAAFYVRLTFTPINVYQTLEPMLQDYRKLRIRELDGS-----------YGLMTFDEFIDKLLTETIVFEVVLPRLTSRKVLEELESLPPRKSTLAV 187          
BLAST of Ggra6842.t1 vs. uniprot
Match: A0A5A8D3W8 (Pre-mRNA-splicing factor 38 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D3W8_CAFRO)

HSP 1 Score: 135 bits (339), Expect = 5.090e-36
Identity = 76/196 (38.78%), Postives = 111/196 (56.63%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSALA 196
            MAN TD  A +  G DPQ+ +  + R  I  S +W  H F +    L+  AV + H+ +T G +  P+PF+C++LKLLQ+ P    +  Y+ Q + KY R L AFY RL+  P  VY++LEPL +DFRKL VR            S   + + H+D+++D LL E   + + LP LP R +L  + +L+PR S LA
Sbjct:    1 MANRTDVLAQNVHGTDPQNLVEHLLRQRIQNSRYWKEHCFGLDAETLIEKAVKIDHIGSTFGGIRKPTPFICLVLKLLQIQPPLDAVIEYVKQDEHKYLRALGAFYTRLVGDPVQVYKVLEPLYNDFRKLAVR------------SPSGWELSHMDELVDMLLREEFAWELTLPMLPRRRLLESSGKLAPRVSLLA 184          
BLAST of Ggra6842.t1 vs. uniprot
Match: A0A6B2LH51 (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LH51_9EUKA)

HSP 1 Score: 134 bits (337), Expect = 7.580e-36
Identity = 77/195 (39.49%), Postives = 109/195 (55.90%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSAL 195
            MAN TD SAL   G DPQ+ I  I R+ IH + +WN   F ++   +V  A+ L H+  T+G     SPFLC+LLK LQL+P       ++   D++Y R L AFY+RL+     +Y+ LEPL +DFR++  R  D            TY++ HVD+ +D LLTE  +  + LPR+ PR +L +   L  R S L
Sbjct:    1 MANRTDPSALSIHGTDPQNLIEKIVRNRIHAAKYWNEECFGLTAVTMVDKAMELKHVGGTYGGNKKASPFLCLLLKFLQLSPEKEIAIAFIDNDDYRYMRCLGAFYLRLIGKAVDIYQYLEPLYNDFRRIRFRNPD-----------GTYSVTHVDEFVDQLLTEDRVCDVILPRILPRRVLEEIGVLQRRVSIL 184          
BLAST of Ggra6842.t1 vs. uniprot
Match: D8QUJ9 (Pre-mRNA-splicing factor 38 n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QUJ9_SELML)

HSP 1 Score: 135 bits (340), Expect = 1.450e-35
Identity = 79/195 (40.51%), Postives = 110/195 (56.41%), Query Frame = 0
Query:    1 MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPLAVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTYAIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSAL 195
            MAN TD +A    G +PQ+ +  I R  IH S FW    FA++   LV  A+ L H+  T+G     +PF+C+ LK+LQ+ P    +  ++   D+KY RVL AFY+RL+     VY+ LEPL +D+RK+  R++D S           + + HVD+ ID LLT      I LPR+P R +L    QL PRKSAL
Sbjct:    1 MANRTDPAAKSVHGTNPQNLVEKILREKIHQSSFWKEQCFALTAETLVDKAMELDHIGGTYGGNRKATPFMCLTLKMLQIQPEKEIVVEFIKNQDYKYVRVLGAFYLRLVGKATDVYQYLEPLYNDYRKIRQRSADGS-----------FFLSHVDEFIDQLLTTDYCCDITLPRVPKRSVLEQNNQLEPRKSAL 184          
The following BLAST results are available for this feature:
BLAST of Ggra6842.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISM99.750e-10981.22Pre-mRNA-splicing factor 38 n=1 Tax=Gracilariopsis... [more]
R7QB682.440e-5252.04Pre-mRNA-splicing factor 38 n=1 Tax=Chondrus crisp... [more]
M2XT212.400e-4043.08Pre-mRNA-splicing factor 38 n=1 Tax=Galdieria sulp... [more]
A0A2P2IFV21.280e-3742.86Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hir... [more]
A0A316ZBR81.480e-3742.05Pre-mRNA-splicing factor 38 n=1 Tax=Tilletiopsis w... [more]
A0A075AYX02.290e-3641.03Pre-mRNA-splicing factor 38 n=1 Tax=Rozella allomy... [more]
A0A0L6VIQ52.510e-3643.94Pre-mRNA-splicing factor 38 n=1 Tax=Puccinia sorgh... [more]
A0A5A8D3W85.090e-3638.78Pre-mRNA-splicing factor 38 n=1 Tax=Cafeteria roen... [more]
A0A6B2LH517.580e-3639.49Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Arc... [more]
D8QUJ91.450e-3540.51Pre-mRNA-splicing factor 38 n=1 Tax=Selaginella mo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 15..183
e-value: 3.8E-44
score: 150.7
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..195
NoneNo IPR availablePANTHERPTHR23142:SF1PRE-MRNA-SPLICING FACTOR 38Acoord: 1..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:652768..653361 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6842.t1Ggra6842.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 652768..653361 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6842.t1 ID=Ggra6842.t1|Name=Ggra6842.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPL
AVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPR
VLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTY
AIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSALAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38