Ggra6842.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6842.t1
Unique NameGgra6842.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:652768..653361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703323.1
Preferred namePRPF38A
PFAMsPRP38,PRP38_assoc
Max annot lvl2759|Eukaryota
KEGG koko:K12849,ko:K12851
KEGG Pathwayko03040,map03040
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0030532,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071011,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1990904
Evalue3.73e-42
EggNOG OGsKOG2889@1|root,KOG2889@2759|Eukaryota
DescriptionRNA splicing
COG categoryBK
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6842Ggra6842Gracilaria gracilis GNS1m malegenetig00000056_pilon 652768..653361 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6842.t1.stop1Ggra6842.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 652768..652770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6842.t1.CDS1Ggra6842.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 652768..653361 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6842.t1.exon1Ggra6842.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 652768..653361 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6842.t1.start1Ggra6842.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 653359..653361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6842.t1Ggra6842.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 652768..653361 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6842.t1 ID=Ggra6842.t1|Name=Ggra6842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPL
AVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPR
VLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTY
AIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSALAL*
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spliced messenger RNA

>Ggra6842.t1 ID=Ggra6842.t1|Name=Ggra6842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000056_pilon:652768..653361- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACACCACCGACGAGTCTGCGCTCCACAAGCTTGGCTACGACCC
GCAGCATCATATCCCCCCCATCACGCGCTCATCCATTCATCTCAGCCCAT
TTTGGAATCGCCATCTCTTCGCTGTCTCCGTGGCCGATCTCGTGCCCTTG
GCCGTGTCGCTCTCGCATCTCTCAGCCACCCACGGCCCTATGCACACACC
CAGTCCCTTTTTGTGCATGCTTCTCAAGCTGCTTCAGCTGGCGCCAACCA
CATCGGAGATTAGTGTGTACTTGCATCAAACTGATTTCAAGTACCCACGC
GTGCTGGCTGCGTTTTATATTCGCCTCATGGAAACACCCGCCGTTGTTTA
TCGCTTGTTGGAACCTTTGTTGTCCGATTTTCGCAAGCTCGTCGTGCGTG
CCTCCGATGTGAGCTCCGTCATTGCCGACGTGTCTTCTTCACACACCTAT
GCTATAGTGCACGTTGATGACGTAATCGACGCTTTGCTTACTGAACGCGA
GCTCTTCGGTATACCTCTTCCACGCCTCCCACCACGTCCCATGTTAGTCG
ACACTGCACAACTGTCCCCCAGGAAATCAGCCCTGGCTCTCTAA
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protein sequence of Ggra6842.t1

>Ggra6842.t1 ID=Ggra6842.t1|Name=Ggra6842.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MANTTDESALHKLGYDPQHHIPPITRSSIHLSPFWNRHLFAVSVADLVPL
AVSLSHLSATHGPMHTPSPFLCMLLKLLQLAPTTSEISVYLHQTDFKYPR
VLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVIADVSSSHTY
AIVHVDDVIDALLTERELFGIPLPRLPPRPMLVDTAQLSPRKSALAL*
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mRNA from alignment at tig00000056_pilon:652768..653361-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6842.t1 ID=Ggra6842.t1|Name=Ggra6842.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000056_pilon:652768..653361- (Gracilaria gracilis GNS1m male)
ATGGCCAACACCACCGACGAGTCTGCGCTCCACAAGCTTGGCTACGACCC
GCAGCATCATATCCCCCCCATCACGCGCTCATCCATTCATCTCAGCCCAT
TTTGGAATCGCCATCTCTTCGCTGTCTCCGTGGCCGATCTCGTGCCCTTG
GCCGTGTCGCTCTCGCATCTCTCAGCCACCCACGGCCCTATGCACACACC
CAGTCCCTTTTTGTGCATGCTTCTCAAGCTGCTTCAGCTGGCGCCAACCA
CATCGGAGATTAGTGTGTACTTGCATCAAACTGATTTCAAGTACCCACGC
GTGCTGGCTGCGTTTTATATTCGCCTCATGGAAACACCCGCCGTTGTTTA
TCGCTTGTTGGAACCTTTGTTGTCCGATTTTCGCAAGCTCGTCGTGCGTG
CCTCCGATGTGAGCTCCGTCATTGCCGACGTGTCTTCTTCACACACCTAT
GCTATAGTGCACGTTGATGACGTAATCGACGCTTTGCTTACTGAACGCGA
GCTCTTCGGTATACCTCTTCCACGCCTCCCACCACGTCCCATGTTAGTCG
ACACTGCACAACTGTCCCCCAGGAAATCAGCCCTGGCTCTCTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:652768..653361-

>Ggra6842.t1 ID=Ggra6842.t1|Name=Ggra6842.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000056_pilon:652768..653361- (Gracilaria gracilis GNS1m male)
ATGGCCAACACCACCGACGAGTCTGCGCTCCACAAGCTTGGCTACGACCC
GCAGCATCATATCCCCCCCATCACGCGCTCATCCATTCATCTCAGCCCAT
TTTGGAATCGCCATCTCTTCGCTGTCTCCGTGGCCGATCTCGTGCCCTTG
GCCGTGTCGCTCTCGCATCTCTCAGCCACCCACGGCCCTATGCACACACC
CAGTCCCTTTTTGTGCATGCTTCTCAAGCTGCTTCAGCTGGCGCCAACCA
CATCGGAGATTAGTGTGTACTTGCATCAAACTGATTTCAAGTACCCACGC
GTGCTGGCTGCGTTTTATATTCGCCTCATGGAAACACCCGCCGTTGTTTA
TCGCTTGTTGGAACCTTTGTTGTCCGATTTTCGCAAGCTCGTCGTGCGTG
CCTCCGATGTGAGCTCCGTCATTGCCGACGTGTCTTCTTCACACACCTAT
GCTATAGTGCACGTTGATGACGTAATCGACGCTTTGCTTACTGAACGCGA
GCTCTTCGGTATACCTCTTCCACGCCTCCCACCACGTCCCATGTTAGTCG
ACACTGCACAACTGTCCCCCAGGAAATCAGCCCTGGCTCTCTAA
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