Ggra6840.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6840.t1
Unique NameGgra6840.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Homology
BLAST of Ggra6840.t1 vs. uniprot
Match: A0A2V3IPW0 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPW0_9FLOR)

HSP 1 Score: 325 bits (834), Expect = 3.540e-111
Identity = 195/206 (94.66%), Postives = 203/206 (98.54%), Query Frame = 0
Query:    6 SVARSARLLRPGARSIFSITPRLNEGERKPTEPSTAETPLKTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            ++ARSARLLRP AR+IFS+TPRLNEGE+KPT PST+ETPLK+N QHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPN+EYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR
Sbjct:    6 TIARSARLLRPQARTIFSVTPRLNEGEQKPTTPSTSETPLKSNPQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211          
BLAST of Ggra6840.t1 vs. uniprot
Match: R7Q9V7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9V7_CHOCR)

HSP 1 Score: 271 bits (694), Expect = 8.830e-90
Identity = 168/194 (86.60%), Postives = 179/194 (92.27%), Query Frame = 0
Query:   18 ARSIFSITPRLNEGERKPTEPSTAETPLKTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            AR+ FS TP  NEG+R  T+PST +TP+ T+T  LV +T+EALF+TEM RG+AL LQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRY SGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPN+EYATETHEELLYNKEKLLANGDRWESEIAKNI NESMYR
Sbjct:   24 ARTFFSATPPRNEGDRPLTQPSTPQTPMATDTASLVRKTSEALFMTEMMRGMALALQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYASGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIENESMYR 217          
BLAST of Ggra6840.t1 vs. uniprot
Match: A0A5J4YML1 (NADH dehydrogenase ubiquinone iron-sulfur protein 8-A, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YML1_PORPP)

HSP 1 Score: 234 bits (597), Expect = 6.100e-75
Identity = 146/171 (85.38%), Postives = 159/171 (92.98%), Query Frame = 0
Query:   41 AETPLKTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            A  P+  + Q +  +TA+ALFLTE+ RG+ LTLQYFFQPKVTL+YP+EKGP+SPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNI +ES YR
Sbjct:   54 ARGPMDDSVQSIAEKTAQALFLTEIVRGMGLTLQYFFQPKVTLDYPLEKGPISPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIQSESQYR 224          
BLAST of Ggra6840.t1 vs. uniprot
Match: A0A1X6NQ17 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQ17_PORUM)

HSP 1 Score: 233 bits (593), Expect = 5.030e-74
Identity = 148/172 (86.05%), Postives = 161/172 (93.60%), Query Frame = 0
Query:   40 TAETPLKTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            TAET + T+ Q LV++TAEAL+LTEM RG+ALTLQYFFQPKVTL+YPMEKGP SPRFRGEHALRRY SGEERCIACKLCEA+CPAQAITIEAEPRP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPN EYATETHEELLYNK KLLANGDRWE+EIA+N+ +ES+YR
Sbjct:   75 TAETIMPTDNQALVSKTAEALYLTEMMRGMALTLQYFFQPKVTLDYPMEKGPSSPRFRGEHALRRYESGEERCIACKLCEAICPAQAITIEAEPRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNMEYATETHEELLYNKAKLLANGDRWETEIAQNLKSESLYR 246          
BLAST of Ggra6840.t1 vs. uniprot
Match: M2XEI5 (NADH dehydrogenase (Ubiquinone) Fe-S protein 8 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XEI5_GALSU)

HSP 1 Score: 227 bits (578), Expect = 7.330e-72
Identity = 153/203 (75.37%), Postives = 164/203 (80.79%), Query Frame = 0
Query:   18 ARSIFSITPRLNEGER---------KPTEPSTAETPLKTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            +R+ FS    LNEG+          K T+P    +      + LV  TA  LF TEM RGL +TLQYFFQP VTLNYP EKGPLSPRFRGEHALRRYPSGEERCIACKLCEA+CPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLL NGDRWE+EIAKN+  E+MYR
Sbjct:   38 SRNFFSKP--LNEGQSPSSSSSESVKKTQPQGTSSERVPTWKELVDATATTLFATEMVRGLMMTLQYFFQPAVTLNYPSEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLRNGDRWETEIAKNLEAEAMYR 238          
BLAST of Ggra6840.t1 vs. uniprot
Match: T2MIX5 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MIX5_HYDVU)

HSP 1 Score: 215 bits (547), Expect = 1.760e-67
Identity = 149/215 (69.30%), Postives = 167/215 (77.67%), Query Frame = 0
Query:    1 MLPASSVARSARLLR--PGARSIFSITPRLNEGERKPTEPSTAETPLKTNTQ--HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            M+  SS+ RS+ LL+  P  R+I      LN           A  P +T+ +  H+  R A  LFLT++ RGLA+TL Y F+   T+NYP EKGPLSPRFRGEHALRRYPSGEERCIACKLCEA+CPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEY+TETHEELLYNKEKLL NGDRWE EIAKNI  + +YR
Sbjct:    1 MMNLSSLLRSSLLLKAKPFVRTIAQAGQPLNHQSGASPYKYVALLPEETSNEFHHINNRNATILFLTDLLRGLAMTLSYVFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYSTETHEELLYNKEKLLENGDRWEVEIAKNIQADYLYR 215          
BLAST of Ggra6840.t1 vs. uniprot
Match: C1FHK3 (NADH dehydrogenase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FHK3_MICCC)

HSP 1 Score: 215 bits (548), Expect = 1.880e-67
Identity = 129/171 (75.44%), Postives = 150/171 (87.72%), Query Frame = 0
Query:   41 AETPLKTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            + TP+ T+   ++  +A+ LFLTEMFRG++L ++YF++PKVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYAT THEELLY+KEKLLANGD+WE EI KN+A+ES+YR
Sbjct:   58 SSTPMPTDLNGVLDASAQTLFLTEMFRGMSLAMKYFWEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATYTHEELLYDKEKLLANGDKWELEIQKNLASESLYR 228          
BLAST of Ggra6840.t1 vs. uniprot
Match: A0A7N2MZB9 (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MZB9_QUELO)

HSP 1 Score: 214 bits (546), Expect = 3.220e-67
Identity = 131/157 (83.44%), Postives = 141/157 (89.81%), Query Frame = 0
Query:   55 RTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            R+   LFLTEM RGL LTL+YFF+PKVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEAVCPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLY+KEKLL NGDRWESEIA+N+ +ES+YR
Sbjct:   67 RSINTLFLTEMVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYDKEKLLENGDRWESEIAENLRSESLYR 223          
BLAST of Ggra6840.t1 vs. uniprot
Match: A0A7J0F8T5 (Alpha-helical ferredoxin n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0F8T5_9ERIC)

HSP 1 Score: 212 bits (540), Expect = 2.090e-66
Identity = 129/164 (78.66%), Postives = 144/164 (87.80%), Query Frame = 0
Query:   48 NTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            +T  +  R+   LFLTEM RGL+LTL+YFF PKVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPNFE+ATETHEELLY+KEKLL NGDRWE+EIA+N+ +ES+YR
Sbjct:   53 STDKVFERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 216          
BLAST of Ggra6840.t1 vs. uniprot
Match: A0A7N0TE48 (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TE48_KALFE)

HSP 1 Score: 212 bits (540), Expect = 2.160e-66
Identity = 134/207 (64.73%), Postives = 158/207 (76.33%), Query Frame = 0
Query:    5 SSVARSARLLRPGARSIFSITPRLNEGERKPTEPSTAETPLKTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            S++     +L   ++S   +   L   +R+  E       +  +   +  R+   LFLTEM RGL LTL+YFF+PKVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPNFE+ATETHEELLY+KEKLL NGDRWE+EIA+N+ +ES+YR
Sbjct:   11 SAIRARQIVLSSSSQSATRLNAHLFSSKREDKEREELANEISKDWSAVFDRSINTLFLTEMVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 217          
The following BLAST results are available for this feature:
BLAST of Ggra6840.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPW03.540e-11194.66NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7Q9V78.830e-9086.60Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YML16.100e-7585.38NADH dehydrogenase ubiquinone iron-sulfur protein ... [more]
A0A1X6NQ175.030e-7486.05Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2XEI57.330e-7275.37NADH dehydrogenase (Ubiquinone) Fe-S protein 8 n=1... [more]
T2MIX51.760e-6769.30NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
C1FHK31.880e-6775.44NADH dehydrogenase n=1 Tax=Micromonas commoda (str... [more]
A0A7N2MZB93.220e-6783.44Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]
A0A7J0F8T52.090e-6678.66Alpha-helical ferredoxin n=1 Tax=Actinidia rufa Ta... [more]
A0A7N0TE482.160e-6664.73Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010226NADH-quinone oxidoreductase, chain ITIGRFAMTIGR01971TIGR01971coord: 68..189
e-value: 6.7E-51
score: 168.9
IPR010226NADH-quinone oxidoreductase, chain IPANTHERPTHR10849NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIALcoord: 51..211
IPR010226NADH-quinone oxidoreductase, chain IHAMAPMF_01351NDH1_NuoIcoord: 59..195
score: 28.797491
NoneNo IPR availableGENE3D3.30.70.3270coord: 85..210
e-value: 1.9E-45
score: 156.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..48
NoneNo IPR availablePANTHERPTHR10849:SF30SUBFAMILY NOT NAMEDcoord: 51..211
NoneNo IPR availableSUPERFAMILY548624Fe-4S ferredoxinscoord: 85..195
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPFAMPF12838Fer4_7coord: 111..165
e-value: 1.2E-13
score: 51.4
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 103..132
score: 10.020185
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 142..171
score: 10.952673
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 151..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:647305..648073 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6840.t1Ggra6840.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 647305..648073 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6840.t1 ID=Ggra6840.t1|Name=Ggra6840.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MLPASSVARSARLLRPGARSIFSITPRLNEGERKPTEPSTAETPLKTNTQ
HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEH
ALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTK
CIFCGACQEACPVDAIVEGPNFEYATETHEELLYNKEKLLANGDRWESEI
AKNIANESMYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010226NADH_quinone_OxRdtase_chainI
IPR0178964Fe4S_Fe-S-bd
IPR0179004Fe4S_Fe_S_CS