Ggra6840.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6840.t1
Unique NameGgra6840.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:647305..648073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704887.1
PFAMsFer4
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03941,ko:K09534
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0016020,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046872,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue2.23e-73
EggNOG OGsCOG1143@1|root,KOG3256@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6840Ggra6840Gracilaria gracilis GNS1m malegenetig00000056_pilon 647305..648073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6840.t1Ggra6840.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 647305..648073 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6840.t1.start1Ggra6840.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 647305..647307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6840.t1.CDS1Ggra6840.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 647305..647458 +
Ggra6840.t1.CDS2Ggra6840.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 647592..648073 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6840.t1.exon1Ggra6840.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 647305..647458 +
Ggra6840.t1.exon2Ggra6840.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 647592..648073 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6840.t1.intron1Ggra6840.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 647459..647591 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6840.t1.stop1Ggra6840.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 648071..648073 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6840.t1 ID=Ggra6840.t1|Name=Ggra6840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=212bp
MLPASSVARSARLLRPGARSIFSITPRLNEGERKPTEPSTAETPLKTNTQ
HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEH
ALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTK
CIFCGACQEACPVDAIVEGPNFEYATETHEELLYNKEKLLANGDRWESEI
AKNIANESMYR*
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spliced messenger RNA

>Ggra6840.t1 ID=Ggra6840.t1|Name=Ggra6840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=636bp|location=Sequence derived from alignment at tig00000056_pilon:647305..648073+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCCGCGAGCAGTGTTGCGCGGTCGGCGCGCCTTTTGAGGCCTGG
AGCGCGCTCAATCTTTTCGATCACCCCTCGTTTGAACGAGGGGGAGAGGA
AGCCCACGGAGCCCTCAACTGCCGAAACTCCGCTCAAGACAAACACTCAA
CACCTCGTTACTCGTACCGCCGAGGCTCTGTTCCTCACGGAGATGTTTCG
TGGTCTTGCGCTAACGTTGCAATATTTCTTCCAGCCCAAGGTCACGCTGA
ATTACCCGATGGAGAAGGGCCCTCTATCTCCACGCTTTCGCGGCGAACAT
GCATTGCGTCGCTATCCGTCCGGTGAAGAGCGCTGCATTGCATGCAAACT
CTGTGAGGCTGTATGCCCGGCACAAGCTATCACTATTGAAGCTGAGCCGC
GTCCTGACGGATCGAGACGTACCACTAGATATGACATCGACATGACCAAG
TGCATATTTTGTGGTGCTTGTCAGGAGGCTTGCCCTGTTGACGCCATTGT
TGAAGGTCCCAACTTTGAGTACGCTACGGAGACACATGAAGAGTTGCTGT
ATAACAAGGAGAAGTTGTTGGCCAATGGTGACAGATGGGAGTCTGAAATT
GCGAAGAACATTGCCAACGAGAGCATGTACCGCTAG
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protein sequence of Ggra6840.t1

>Ggra6840.t1 ID=Ggra6840.t1|Name=Ggra6840.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=212bp
MLPASSVARSARLLRPGARSIFSITPRLNEGERKPTEPSTAETPLKTNTQ
HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEH
ALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTK
CIFCGACQEACPVDAIVEGPNFEYATETHEELLYNKEKLLANGDRWESEI
AKNIANESMYR*
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mRNA from alignment at tig00000056_pilon:647305..648073+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6840.t1 ID=Ggra6840.t1|Name=Ggra6840.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=769bp|location=Sequence derived from alignment at tig00000056_pilon:647305..648073+ (Gracilaria gracilis GNS1m male)
ATGCTTCCCGCGAGCAGTGTTGCGCGGTCGGCGCGCCTTTTGAGGCCTGG
AGCGCGCTCAATCTTTTCGATCACCCCTCGTTTGAACGAGGGGGAGAGGA
AGCCCACGGAGCCCTCAACTGCCGAAACTCCGCTCAAGACAAACACTCAA
CACCGTACGTAGCTTTTTCGTATTACTCGGAAATGAGTCGTTGGGTGTCA
ATGCAACTATTCTGACTCCACTCCTTGAATCGTTCTGATTTGTTGTATAT
GCGCTTTGTATGCATTTGCTTTCTTCGCCGAACGCAGTCGTTACTCGTAC
CGCCGAGGCTCTGTTCCTCACGGAGATGTTTCGTGGTCTTGCGCTAACGT
TGCAATATTTCTTCCAGCCCAAGGTCACGCTGAATTACCCGATGGAGAAG
GGCCCTCTATCTCCACGCTTTCGCGGCGAACATGCATTGCGTCGCTATCC
GTCCGGTGAAGAGCGCTGCATTGCATGCAAACTCTGTGAGGCTGTATGCC
CGGCACAAGCTATCACTATTGAAGCTGAGCCGCGTCCTGACGGATCGAGA
CGTACCACTAGATATGACATCGACATGACCAAGTGCATATTTTGTGGTGC
TTGTCAGGAGGCTTGCCCTGTTGACGCCATTGTTGAAGGTCCCAACTTTG
AGTACGCTACGGAGACACATGAAGAGTTGCTGTATAACAAGGAGAAGTTG
TTGGCCAATGGTGACAGATGGGAGTCTGAAATTGCGAAGAACATTGCCAA
CGAGAGCATGTACCGCTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:647305..648073+

>Ggra6840.t1 ID=Ggra6840.t1|Name=Ggra6840.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=636bp|location=Sequence derived from alignment at tig00000056_pilon:647305..648073+ (Gracilaria gracilis GNS1m male)
ATGCTTCCCGCGAGCAGTGTTGCGCGGTCGGCGCGCCTTTTGAGGCCTGG
AGCGCGCTCAATCTTTTCGATCACCCCTCGTTTGAACGAGGGGGAGAGGA
AGCCCACGGAGCCCTCAACTGCCGAAACTCCGCTCAAGACAAACACTCAA
CACCTCGTTACTCGTACCGCCGAGGCTCTGTTCCTCACGGAGATGTTTCG
TGGTCTTGCGCTAACGTTGCAATATTTCTTCCAGCCCAAGGTCACGCTGA
ATTACCCGATGGAGAAGGGCCCTCTATCTCCACGCTTTCGCGGCGAACAT
GCATTGCGTCGCTATCCGTCCGGTGAAGAGCGCTGCATTGCATGCAAACT
CTGTGAGGCTGTATGCCCGGCACAAGCTATCACTATTGAAGCTGAGCCGC
GTCCTGACGGATCGAGACGTACCACTAGATATGACATCGACATGACCAAG
TGCATATTTTGTGGTGCTTGTCAGGAGGCTTGCCCTGTTGACGCCATTGT
TGAAGGTCCCAACTTTGAGTACGCTACGGAGACACATGAAGAGTTGCTGT
ATAACAAGGAGAAGTTGTTGGCCAATGGTGACAGATGGGAGTCTGAAATT
GCGAAGAACATTGCCAACGAGAGCATGTACCGCTAG
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