Ggra6831.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6831.t1
Unique NameGgra6831.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Homology
BLAST of Ggra6831.t1 vs. uniprot
Match: A0A2V3IPT7 (Shikimate kinase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPT7_9FLOR)

HSP 1 Score: 368 bits (944), Expect = 5.430e-126
Identity = 189/273 (69.23%), Postives = 221/273 (80.95%), Query Frame = 0
Query:    2 QPAFLQSAPVGLHPQSFLNQGTCRTNGWVAPRF--PTT-RRRASLFMCESPKDSGEQKPA--PRILKDVTAEVKELKSVLKKCSIYLIGPMGTGKSAVGKYLASEIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHPPRSASLYPGKLPNRGS 269
            +PAF+ S P G      LN   C  NG+       PT  ++RA LFMCES  DS +++ A  PR  K+V+ EVKELKSVLKKCSIYLIGPMG+GKS +GKY+ASE+GF FLDTD+LIE  AK+SIPEIFE+DGEE FRDLESA+LDQ+AAFIGCCVATGGGAVLRKSNWGKL+ GIVVYLETPVDVL DRLQ DT RPLLK+ D  TLR+RIRDILEERRHLY QAD+TV +++ MPVD+ GKEVIR+LTNFIK++PPRS+ LYPG LP RG+
Sbjct:    3 KPAFVCSIPRGRPWTPSLNCHKC--NGFYGKHIVLPTKLKKRALLFMCESSTDSSQEQEAAQPRYTKEVSLEVKELKSVLKKCSIYLIGPMGSGKSVIGKYMASELGFCFLDTDELIEAAAKRSIPEIFETDGEEAFRDLESAVLDQLAAFIGCCVATGGGAVLRKSNWGKLRCGIVVYLETPVDVLRDRLQGDTTRPLLKNADGETLRERIRDILEERRHLYMQADLTVHIEKSMPVDDAGKEVIRKLTNFIKANPPRSSKLYPGNLPKRGA 273          
BLAST of Ggra6831.t1 vs. uniprot
Match: shikimate kinase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3686 (shikimate kinase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3686)

HSP 1 Score: 218 bits (556), Expect = 8.120e-68
Identity = 118/216 (54.63%), Postives = 146/216 (67.59%), Query Frame = 0
Query:   45 MCESPKDSGEQKPAPRILKDVTAEVKELKSVLKKCSIYLIGPMGTGKSAVGKYLASEIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLR-DRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHPPRSASL 259
            M E   +SG+  P          E KEL+S+LKKC IY +G MG+GKSAV KY+A EIG+RFLDTD+LIE VA +SI EIF  +GEE+FRDLESA+LDQV A  G CVATGGGAVLR SNW  +Q+GIVV+L  PV+ L  RL  D  RP+L        R  R+  IL+ R+  Y  ADVTV V  +  +D VGKE IR+++NFIK +PPR A +
Sbjct:    1 MSEQAHESGKLSP----------EAKELRSLLKKCPIYFVGCMGSGKSAVAKYVALEIGYRFLDTDELIELVANQSISEIFRVEGEESFRDLESAVLDQVHALTGVCVATGGGAVLRNSNWAHMQSGIVVWLNVPVETLAKRLADDATRPVLGRLSTFEERTQRLSAILDSRKVRYALADVTVFVDDNDGIDHVGKEAIRKISNFIKENPPRFAKV 206          
BLAST of Ggra6831.t1 vs. uniprot
Match: A0A5J4Z3M2 (Shikimate kinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3M2_PORPP)

HSP 1 Score: 186 bits (472), Expect = 1.550e-54
Identity = 89/195 (45.64%), Postives = 131/195 (67.18%), Query Frame = 0
Query:   70 KELKSVLKKCSIYLIGPMGTGKSAVGKYLASEIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHPPRSASLYPGKL 264
            ++L   L++ ++Y +G MG+GKS+VGK  A  + +RFLDTD  IE + K SI E+F + GE  FR+LE+A+L ++A++    ++TGGG VL   NW  LQTG+V +L+ PVDVL  RL  DT RPLL+  D      ++ +IL +R  +YK ADV V V   M  + + +E  R +TNF+K++PP+SA+LYPGK+
Sbjct:   74 RDLSERLRRTNVYFVGMMGSGKSSVGKLFAQRLKYRFLDTDVTIERLTKSSITELFANSGEAAFRELETAVLAEMASYTDAVISTGGGIVLNTKNWSFLQTGLVCWLDVPVDVLVQRLADDTTRPLLQGQDPA---QKLSEILAKREAMYKNADVHVPVTEAMSNEAIAQEACRLITNFVKANPPKSAALYPGKM 265          
BLAST of Ggra6831.t1 vs. uniprot
Match: A0A8J6S811 (Shikimate kinase n=4 Tax=unclassified Trichocoleus TaxID=2628910 RepID=A0A8J6S811_9CYAN)

HSP 1 Score: 172 bits (435), Expect = 5.460e-50
Identity = 79/184 (42.93%), Postives = 127/184 (69.02%), Query Frame = 0
Query:   70 KELKSVLKKCSIYLIGPMGTGKSAVGKYLASEIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHP 253
            ++++  LK  +IYL+G MG GK++VGK LA ++G+ F+DTD +IE  A KSI +IF S+GE++FR +ES +L +++AF    +ATGGG +LR  NWG LQ G+VV+L+ PV++L  RLQ+DT RPLLK+ D  T    + +   +R+ LY QAD+ + + ++   +++ K++I  +   +K+ P
Sbjct:    6 RQVRESLKGINIYLVGMMGAGKTSVGKLLAQQLGYGFVDTDNVIEKAAGKSINDIFASEGEDSFRQMESKVLQEMSAFTRLAIATGGGIILRLENWGYLQYGLVVWLDAPVELLVARLQNDTTRPLLKNADLAT---ELENRFHQRQPLYAQADLQISISQEQTPEQIAKQIIEAIPTVLKTRP 186          
BLAST of Ggra6831.t1 vs. uniprot
Match: M1V7H7 (Shikimate kinase n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7H7_CYAM1)

HSP 1 Score: 174 bits (441), Expect = 1.110e-49
Identity = 93/201 (46.27%), Postives = 125/201 (62.19%), Query Frame = 0
Query:   70 KELKSVLKKCSIYLIGPMGTGKSAVGKYLASEIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDT------------DAI-TLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHPPRSA 257
            ++L+  L   S+YL+G MG+GKS +G YLA  + + F+DTD +IE   +KSIPEIF  DGEETFRD+ES +L+ + + +   VATGGG VLR+ NWG L TG+VVYL    D+L  R+Q   GRPLL +T             AI  L  R+ +IL ER H Y+QADVTV +  D  V E  + V  +L  FI+ +P  S+
Sbjct:   77 QQLREKLHGASVYLVGMMGSGKSTLGAYLAKALEYAFIDTDVIIERTLQKSIPEIFAQDGEETFRDVESLVLESLQSHVRTVVATGGGVVLRQRNWGTLHTGLVVYLNGTPDMLAKRVQGGAGRPLLSNTMHAPADSTIPEPAAIEALSARLAEILSEREHFYRQADVTVELFPDCSVAETSRAVAAKLIRFIEENPSASS 277          
BLAST of Ggra6831.t1 vs. uniprot
Match: A0A448ZQW6 (Shikimate kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQW6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.590e-49
Identity = 87/180 (48.33%), Postives = 122/180 (67.78%), Query Frame = 0
Query:   76 LKKCSIYLIGPMGTGKSAVGKYLASEIG-FRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHPP 254
            L+  ++YL+G MG+GKS+VG  LA  +G ++FLDTD++IE   K +I EIFES+GEE FRD+ES +LD V A++ C V+TGGG V +  NWGKLQTGIVV+L+   +V+  R++ +  RPLLK  D +     ++D+LEER   Y QAD+ V +  DM  D V   ++  L NFI  +PP
Sbjct:  106 LQGSNLYLVGMMGSGKSSVGDKLARRMGSYKFLDTDEIIEKATKLTINEIFESEGEEGFRDVESQVLDTVHAYVRCVVSTGGGLVCKPKNWGKLQTGIVVWLDVAPEVILKRVEGNEDRPLLKTKDPL---QTLKDLLEERTPKYNQADLRVEITEDMDEDAVASRIVLDLHNFIDDNPP 282          
BLAST of Ggra6831.t1 vs. uniprot
Match: A0A7R9ZGS2 (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.960e-49
Identity = 82/180 (45.56%), Postives = 123/180 (68.33%), Query Frame = 0
Query:   76 LKKCSIYLIGPMGTGKSAVGKYLASEIG-FRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHPP 254
            L+  ++Y +G MG+GKSAVG  +A  +G + FLDTD++IE     SIPEIF+++GEE FR+ E+ +LD V A++ C ++TGGG V R  NW KLQTG+V++L+   +++  R++ DT RPLL+  D +    +++D+LEERR  Y QADV + V  DM  + V   V+++L NFI  +PP
Sbjct:  102 LQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGDTNRPLLQADDPL---QKLKDLLEERREKYSQADVRIEVTEDMDENAVADLVVKELHNFIDENPP 278          
BLAST of Ggra6831.t1 vs. uniprot
Match: A0A0T7BW62 (Shikimate kinase n=1 Tax=Calothrix sp. 336/3 TaxID=1337936 RepID=A0A0T7BW62_9CYAN)

HSP 1 Score: 169 bits (428), Expect = 4.980e-49
Identity = 83/179 (46.37%), Postives = 120/179 (67.04%), Query Frame = 0
Query:   72 LKSVLKKCSIYLIGPMGTGKSAVGKYLASEIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIK 250
            + ++LK  ++YLIG MG GK+ VG  LA ++ +RFLDTD L+E    K+I EIF ++GE TFR LES IL QV A+   C+ATGGG +LR+ NW  L+ G+VV+L+ PV+V+  RL  DT RPLL+D+    L +++R +LEER+ LYKQAD+ + +  D   D +   +I  +   +K
Sbjct:    1 MSNLLKGINLYLIGMMGVGKTTVGNLLARQLKYRFLDTDSLLETATGKTINEIFTTEGETTFRQLESDILAQVCAYKNLCIATGGGIILRRENWSYLRHGLVVWLDAPVEVICQRLAEDTTRPLLQDSH---LEEKLRSLLEERQGLYKQADLQITITGDETPDAIATRIIATIPAVLK 176          
BLAST of Ggra6831.t1 vs. uniprot
Match: K0SPY6 (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPY6_THAOC)

HSP 1 Score: 172 bits (436), Expect = 5.430e-49
Identity = 102/235 (43.40%), Postives = 137/235 (58.30%), Query Frame = 0
Query:   36 TTRRRASLFMCESPK----DSGEQKPA--PRILKDVTAEVKE---------LKSVLKKCSIYLIGPMGTGKSAVGKYLASEIG-FRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIKSHPP 254
            TTR  A  F  E P     D G + P   P +LK      +E         L   L+ C++YLIG MG+GKSAVG  LA  +G + FLDTD ++E     SIPEIFE +GE+ FRD E+ +LD V A + C + TGGG V R  NW KLQTG+V+YL+T  + +  R++  T RPLL+  D +     ++D+ EERR  Y+QADVT+ V+  M V+ V    IR L +FI  +PP
Sbjct:   34 TTRLSAGGFEWEDPTSDQADPGVENPYKNPELLKKTADGDEEGLLVDPARLLSPRLRGCNLYLIGMMGSGKSAVGDALARRMGTYNFLDTDVILERAVGMSIPEIFEKEGEDAFRDAEAQVLDSVHAHVRCVIGTGGGLVTRNQNWAKLQTGLVLYLKTDPETIYKRIEG-TDRPLLQTDDPLAT---LKDLTEERRGKYEQADVTIEVEDGMDVEAVTDMCIRMLHDFIDDNPP 264          
BLAST of Ggra6831.t1 vs. uniprot
Match: A0A1C0VUB0 (Shikimate kinase n=1 Tax=Oscillatoriales cyanobacterium USR001 TaxID=1880991 RepID=A0A1C0VUB0_9CYAN)

HSP 1 Score: 167 bits (424), Expect = 2.060e-48
Identity = 87/177 (49.15%), Postives = 118/177 (66.67%), Query Frame = 0
Query:   74 SVLKKCSIYLIGPMGTGKSAVGKYLASEIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGCCVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTDAITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIK 250
            ++LK  ++YLIG MG GK+ VGK+LASE+G+RF DTD LIE VA KS+ EIF  DGEE+FR+LES +L +++A+    VATGGG VLR+ NW  L  G+VV+L  PV+ + DRL+ D  RPLL++ D   +   +  I  +R+  Y QADV V    D P + VG  VI +L   +K
Sbjct:    2 NLLKGVNVYLIGMMGAGKTTVGKWLASELGYRFFDTDILIEQVAGKSVSEIFTRDGEESFRELESKVLQELSAYTNLIVATGGGIVLRQINWSYLHHGVVVWLNVPVEEICDRLREDNSRPLLREGDPKII---LEGIFTQRQRFYAQADVQVFAGGDNP-EIVGMRVIEELQKMVK 174          
The following BLAST results are available for this feature:
BLAST of Ggra6831.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPT75.430e-12669.23Shikimate kinase n=1 Tax=Gracilariopsis chorda Tax... [more]
shikimate kinase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D36868.120e-6854.63shikimate kinase-like n=1 Tax=Mercenaria mercenari... [more]
A0A5J4Z3M21.550e-5445.64Shikimate kinase n=1 Tax=Porphyridium purpureum Ta... [more]
A0A8J6S8115.460e-5042.93Shikimate kinase n=4 Tax=unclassified Trichocoleus... [more]
M1V7H71.110e-4946.27Shikimate kinase n=1 Tax=Cyanidioschyzon merolae (... [more]
A0A448ZQW61.590e-4948.33Shikimate kinase n=1 Tax=Pseudo-nitzschia multistr... [more]
A0A7R9ZGS21.960e-4945.56Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=... [more]
A0A0T7BW624.980e-4946.37Shikimate kinase n=1 Tax=Calothrix sp. 336/3 TaxID... [more]
K0SPY65.430e-4943.40Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1C0VUB02.060e-4849.15Shikimate kinase n=1 Tax=Oscillatoriales cyanobact... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01100SHIKIMTKNASEcoord: 105..118
score: 39.01
coord: 133..141
score: 47.86
coord: 81..96
score: 54.81
coord: 171..188
score: 39.74
coord: 151..160
score: 56.15
NoneNo IPR availablePANTHERPTHR21087SHIKIMATE KINASEcoord: 63..247
NoneNo IPR availablePANTHERPTHR21087:SF16SHIKIMATE KINASE 1, CHLOROPLASTICcoord: 63..247
IPR031322Shikimate kinase/gluconokinasePFAMPF01202SKIcoord: 87..245
e-value: 4.3E-42
score: 143.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 63..256
e-value: 1.1E-53
score: 184.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 80..244
IPR000623Shikimate kinase/Threonine synthase-like 1HAMAPMF_00109Shikimate_kinasecoord: 78..246
score: 25.615223
IPR000623Shikimate kinase/Threonine synthase-like 1CDDcd00464SKcoord: 80..226
e-value: 1.32471E-58
score: 181.985

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:631507..632316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6831.t1Ggra6831.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 631507..632316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6831.t1 ID=Ggra6831.t1|Name=Ggra6831.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MQPAFLQSAPVGLHPQSFLNQGTCRTNGWVAPRFPTTRRRASLFMCESPK
DSGEQKPAPRILKDVTAEVKELKSVLKKCSIYLIGPMGTGKSAVGKYLAS
EIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGC
CVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTD
AITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIK
SHPPRSASLYPGKLPNRGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031322Shikimate/glucono_kinase
IPR027417P-loop_NTPase
IPR000623Shikimate_kinase/TSH1