Ggra6831.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6831.t1
Unique NameGgra6831.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:631507..632316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog292563.Cyast_1341
Preferred namearoK
PFAMsSKI
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002,RC00078
KEGG koko:K00891
KEGG ReactionR02412
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00022
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
Evalue4.6e-52
EggNOG OGsCOG0703@1|root,COG0703@2|Bacteria,1G5QW@1117|Cyanobacteria
EC2.7.1.71
DescriptionCatalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6831Ggra6831Gracilaria gracilis GNS1m malegenetig00000056_pilon 631507..632316 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6831.t1.start1Ggra6831.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 631507..631509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6831.t1.CDS1Ggra6831.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 631507..632316 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6831.t1.exon1Ggra6831.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 631507..632316 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6831.t1.stop1Ggra6831.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 632314..632316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6831.t1Ggra6831.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 631507..632316 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6831.t1 ID=Ggra6831.t1|Name=Ggra6831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=270bp
MQPAFLQSAPVGLHPQSFLNQGTCRTNGWVAPRFPTTRRRASLFMCESPK
DSGEQKPAPRILKDVTAEVKELKSVLKKCSIYLIGPMGTGKSAVGKYLAS
EIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGC
CVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTD
AITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIK
SHPPRSASLYPGKLPNRGS*
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spliced messenger RNA

>Ggra6831.t1 ID=Ggra6831.t1|Name=Ggra6831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000056_pilon:631507..632316+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCAGCTTTCCTTCAATCGGCACCCGTCGGATTACATCCCCAGTC
ATTCTTGAACCAGGGAACATGTAGAACCAATGGATGGGTTGCCCCGCGAT
TTCCAACCACTCGCAGGAGGGCATCGCTTTTCATGTGCGAAAGTCCCAAA
GATTCGGGAGAGCAAAAGCCTGCACCTCGAATCCTGAAAGACGTGACAGC
AGAGGTCAAGGAACTAAAAAGCGTTTTGAAGAAGTGTTCAATCTATCTGA
TTGGTCCCATGGGGACTGGAAAGAGCGCTGTCGGGAAGTATCTAGCAAGC
GAGATTGGTTTTCGGTTTCTCGACACAGACCAGCTTATCGAGGGAGTGGC
GAAGAAATCCATCCCCGAAATCTTCGAGAGCGATGGCGAGGAAACTTTTC
GCGACCTCGAATCTGCAATTCTGGATCAGGTGGCCGCATTCATTGGGTGT
TGCGTTGCCACAGGTGGCGGGGCGGTATTGAGAAAGAGCAATTGGGGAAA
GCTACAAACAGGAATAGTTGTCTATCTCGAAACGCCTGTAGATGTGCTGA
ACGACCGCTTACAAAGTGATACTGGGCGGCCTCTTTTGAAGGACACTGAC
GCCATCACACTGAGAGACCGCATTAGAGACATTCTAGAGGAACGGCGTCA
TTTGTACAAGCAAGCAGACGTTACCGTAGGAGTCAAGAGGGACATGCCTG
TTGACGAGGTCGGCAAAGAGGTTATTCGTCAGCTGACAAACTTCATCAAA
TCCCATCCACCTCGCTCTGCTTCTCTCTATCCTGGCAAGCTACCGAATAG
AGGCTCTTGA
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protein sequence of Ggra6831.t1

>Ggra6831.t1 ID=Ggra6831.t1|Name=Ggra6831.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MQPAFLQSAPVGLHPQSFLNQGTCRTNGWVAPRFPTTRRRASLFMCESPK
DSGEQKPAPRILKDVTAEVKELKSVLKKCSIYLIGPMGTGKSAVGKYLAS
EIGFRFLDTDQLIEGVAKKSIPEIFESDGEETFRDLESAILDQVAAFIGC
CVATGGGAVLRKSNWGKLQTGIVVYLETPVDVLNDRLQSDTGRPLLKDTD
AITLRDRIRDILEERRHLYKQADVTVGVKRDMPVDEVGKEVIRQLTNFIK
SHPPRSASLYPGKLPNRGS*
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mRNA from alignment at tig00000056_pilon:631507..632316+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6831.t1 ID=Ggra6831.t1|Name=Ggra6831.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=810bp|location=Sequence derived from alignment at tig00000056_pilon:631507..632316+ (Gracilaria gracilis GNS1m male)
ATGCAACCAGCTTTCCTTCAATCGGCACCCGTCGGATTACATCCCCAGTC
ATTCTTGAACCAGGGAACATGTAGAACCAATGGATGGGTTGCCCCGCGAT
TTCCAACCACTCGCAGGAGGGCATCGCTTTTCATGTGCGAAAGTCCCAAA
GATTCGGGAGAGCAAAAGCCTGCACCTCGAATCCTGAAAGACGTGACAGC
AGAGGTCAAGGAACTAAAAAGCGTTTTGAAGAAGTGTTCAATCTATCTGA
TTGGTCCCATGGGGACTGGAAAGAGCGCTGTCGGGAAGTATCTAGCAAGC
GAGATTGGTTTTCGGTTTCTCGACACAGACCAGCTTATCGAGGGAGTGGC
GAAGAAATCCATCCCCGAAATCTTCGAGAGCGATGGCGAGGAAACTTTTC
GCGACCTCGAATCTGCAATTCTGGATCAGGTGGCCGCATTCATTGGGTGT
TGCGTTGCCACAGGTGGCGGGGCGGTATTGAGAAAGAGCAATTGGGGAAA
GCTACAAACAGGAATAGTTGTCTATCTCGAAACGCCTGTAGATGTGCTGA
ACGACCGCTTACAAAGTGATACTGGGCGGCCTCTTTTGAAGGACACTGAC
GCCATCACACTGAGAGACCGCATTAGAGACATTCTAGAGGAACGGCGTCA
TTTGTACAAGCAAGCAGACGTTACCGTAGGAGTCAAGAGGGACATGCCTG
TTGACGAGGTCGGCAAAGAGGTTATTCGTCAGCTGACAAACTTCATCAAA
TCCCATCCACCTCGCTCTGCTTCTCTCTATCCTGGCAAGCTACCGAATAG
AGGCTCTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:631507..632316+

>Ggra6831.t1 ID=Ggra6831.t1|Name=Ggra6831.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=810bp|location=Sequence derived from alignment at tig00000056_pilon:631507..632316+ (Gracilaria gracilis GNS1m male)
ATGCAACCAGCTTTCCTTCAATCGGCACCCGTCGGATTACATCCCCAGTC
ATTCTTGAACCAGGGAACATGTAGAACCAATGGATGGGTTGCCCCGCGAT
TTCCAACCACTCGCAGGAGGGCATCGCTTTTCATGTGCGAAAGTCCCAAA
GATTCGGGAGAGCAAAAGCCTGCACCTCGAATCCTGAAAGACGTGACAGC
AGAGGTCAAGGAACTAAAAAGCGTTTTGAAGAAGTGTTCAATCTATCTGA
TTGGTCCCATGGGGACTGGAAAGAGCGCTGTCGGGAAGTATCTAGCAAGC
GAGATTGGTTTTCGGTTTCTCGACACAGACCAGCTTATCGAGGGAGTGGC
GAAGAAATCCATCCCCGAAATCTTCGAGAGCGATGGCGAGGAAACTTTTC
GCGACCTCGAATCTGCAATTCTGGATCAGGTGGCCGCATTCATTGGGTGT
TGCGTTGCCACAGGTGGCGGGGCGGTATTGAGAAAGAGCAATTGGGGAAA
GCTACAAACAGGAATAGTTGTCTATCTCGAAACGCCTGTAGATGTGCTGA
ACGACCGCTTACAAAGTGATACTGGGCGGCCTCTTTTGAAGGACACTGAC
GCCATCACACTGAGAGACCGCATTAGAGACATTCTAGAGGAACGGCGTCA
TTTGTACAAGCAAGCAGACGTTACCGTAGGAGTCAAGAGGGACATGCCTG
TTGACGAGGTCGGCAAAGAGGTTATTCGTCAGCTGACAAACTTCATCAAA
TCCCATCCACCTCGCTCTGCTTCTCTCTATCCTGGCAAGCTACCGAATAG
AGGCTCTTGA
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