Ggra6824.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6824.t1
Unique NameGgra6824.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length184
Homology
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A2V3IPU9 (PsbP-like protein 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPU9_9FLOR)

HSP 1 Score: 283 bits (725), Expect = 4.770e-95
Identity = 142/176 (80.68%), Postives = 154/176 (87.50%), Query Frame = 0
Query:    8 SARRVSRRAFSAWLSALPLLPLLPANAADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            +A  +SRRAFS  L+  P  PLLPA AADISG VTP++DLPKGFTILRPNGWNEFEA+QDNYDIKWQDVIQ LEFVTVLTSPVA +K+L DLG+AE VG KLA AR  KL+ A EKDI+GIPAYL EIKRESAHQLTLLTVNKQKLYSVNASCSE+RW KREKLLRGVVDSFRPKL
Sbjct:   37 TASTISRRAFSTLLAIAPFAPLLPAAAADISGFVTPHQDLPKGFTILRPNGWNEFEALQDNYDIKWQDVIQPLEFVTVLTSPVAKDKSLTDLGTAEQVGTKLATARNAKLINAAEKDIDGIPAYLFEIKRESAHQLTLLTVNKQKLYSVNASCSERRWNKREKLLRGVVDSFRPKL 212          
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A1X6NNU3 (PsbP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNU3_PORUM)

HSP 1 Score: 183 bits (464), Expect = 3.980e-55
Identity = 88/152 (57.89%), Postives = 111/152 (73.03%), Query Frame = 0
Query:   32 ANAADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            A A ++   V  Y+DL KGFTILRP GWN+FEA    YDIKWQD+IQ LE +TVLT+PV   KT+ D+G+ ++VG KLA++R  +LV AV K+ EG+  Y +E+K  S HQLT L VNK KLYSVN S +E +W KREKLLRGV +SF+P L
Sbjct:   81 ATAVNLGSSVEVYKDLNKGFTILRPQGWNQFEATAGQYDIKWQDLIQPLEIITVLTTPVGKGKTVADIGTPDAVGTKLAKSRRAELVSAVSKEEEGLTYYTVELKSASVHQLTTLVVNKSKLYSVNVSSAEGKWSKREKLLRGVAESFKPSL 232          
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A5J4YMB8 (PsbP-like protein 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMB8_PORPP)

HSP 1 Score: 177 bits (449), Expect = 8.080e-53
Identity = 86/158 (54.43%), Postives = 110/158 (69.62%), Query Frame = 0
Query:   31 PANAA-----DISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            PA+AA      I  LVT Y D+PKGF++ RP GWNEF A  D YDIKWQDVIQ  E +TVLT+PV+  KT   +G+ + VG++LA++R   L+ A E+D E +  Y +E++  + HQL  L++NK KLYSV A+C E RW KREKL RGVVDSF PKL
Sbjct:   78 PADAALPRPPGIGSLVTAYSDIPKGFSMYRPQGWNEFSATPDMYDIKWQDVIQPTEQITVLTTPVSKGKTTESMGTPQEVGERLAKSRKATLIAATERDAENVKVYTIELQFGNLHQLNALSINKSKLYSVTATCGEPRWSKREKLYRGVVDSFSPKL 235          
BLAST of Ggra6824.t1 vs. uniprot
Match: D4NY62 (Chloroplast photosystem II 23 kDa n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D4NY62_GALSU)

HSP 1 Score: 163 bits (412), Expect = 3.940e-47
Identity = 79/149 (53.02%), Postives = 104/149 (69.80%), Query Frame = 0
Query:   35 ADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            A ++  V  Y+DL +G+ ILRP GWNEF   ++ YDIKWQD+IQ LE V + T  +  NK++ DLGS   +G+KLA+ R  +LV A EK+  GIPAY +E+K +  HQL LLT +K KL++V A+CSE RW  REKLLR VV+SF P L
Sbjct:   95 ASVANQVETYKDLIQGYKILRPLGWNEFSGQRNQYDIKWQDIIQPLEVVMIATVDIGKNKSIKDLGSPMQIGEKLAKNRKLQLVTATEKETGGIPAYEIELKGDPLHQLVLLTASKSKLFNVTATCSESRWSNREKLLRTVVESFVPSL 243          
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A7J7IHP7 (PsbP-like protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHP7_9RHOD)

HSP 1 Score: 151 bits (382), Expect = 2.230e-43
Identity = 78/150 (52.00%), Postives = 103/150 (68.67%), Query Frame = 0
Query:   36 DISGLVTPYRDLPKGFTILRPNGWNEFEAMQDN--YDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            D+  L+  Y DL +G+ + RP GWNEF+    N  Y+ K+QD+IQ LEFVTV + PV   KTL  LG AE+VG +LA+ RG  LV A +K+  G+  Y+ E  RE  HQL+L+T+N+ +L+SVNAS SE RW + EKLLR VVDSF P+L
Sbjct:   33 DVRNLLELYVDLQRGYKMYRPKGWNEFDGDPGNTKYEKKFQDIIQPLEFVTVYSIPVKPGKTLESLGDAEAVGRRLAEKRGATLVAANQKESNGVLYYIFEYVREPVHQLSLITINRGRLFSVNASASEARWKRLEKLLRAVVDSFVPQL 182          
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A7V5I2P9 (PsbP domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5I2P9_9BACT)

HSP 1 Score: 154 bits (390), Expect = 4.080e-43
Identity = 81/155 (52.26%), Postives = 105/155 (67.74%), Query Frame = 0
Query:   31 PANAADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDN--YDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            PA   D+   +  Y DL +G+ + RP GWNEF+    N  Y+ K+QD+IQ LEFVTV + PV   KTL  LG AE+VG +LA+ RG  LV A +K+ +GI  Y+ E  RE AHQL+LLT+N+ +L+SVNA  SE RW + EKLLR VVDSF P+L
Sbjct:  150 PAVPRDVRNQLELYVDLQRGYKMYRPKGWNEFDGDPGNTKYEKKFQDIIQPLEFVTVFSIPVKPGKTLASLGDAEAVGKRLAEQRGATLVAANQKESDGILYYVFEYVREPAHQLSLLTINRGRLFSVNACASEARWKRLEKLLRAVVDSFVPQL 304          
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A7S0W0N6 (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W0N6_9CRYP)

HSP 1 Score: 127 bits (320), Expect = 1.080e-32
Identity = 65/155 (41.94%), Postives = 99/155 (63.87%), Query Frame = 0
Query:   33 NAADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRES----AHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
             A+ + GL+ P++D+ KGF +L+P GWN+F+A    YDIKW+D+++  E V V T  V + K++  LG  E++G KLA  +  +LV A +++++GI  Y    K+ +    A ++  L VNK +L+SV A+ SEKRW KREK    V+ SF PKL
Sbjct:  150 KASRMGGLLEPFKDINKGFQLLKPRGWNQFDAAPGEYDIKWEDLVEKSEMVMVGTKEVQTAKSVDALGDVEALGKKLAAKKKAELVSAEKREVDGILFYKFIFKQGNEKVGAREVYQLCVNKGRLWSVTATTSEKRWAKREKFYDNVMMSFVPKL 304          
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A7S2YI26 (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YI26_9STRA)

HSP 1 Score: 123 bits (308), Expect = 9.450e-32
Identity = 62/155 (40.00%), Postives = 95/155 (61.29%), Query Frame = 0
Query:   31 PANAADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASN-KTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIK-RESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            P     + GL+ P++D P+   ++ P+GWN+F+     +D+KWQD++   E + + +SPV S  +++  LG  + VG  LA  RG KL++A E+  +GI  Y  +    +  HQL  L V+K KL+SV+A+  EKRWGKRE+L   V+ SF PKL
Sbjct:   67 PRVTTRMGGLLEPFQDGPRSIRMMAPSGWNKFDGEVGAFDLKWQDLVDPTENIKITSSPVKSTTESVALLGPVQDVGLSLASKRGAKLIKAEERQTDGIVFYKFDFAIDDGTHQLLQLCVSKGKLWSVDANAKEKRWGKREELYNNVLGSFMPKL 221          
BLAST of Ggra6824.t1 vs. uniprot
Match: A0A7R9ZSC4 (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZSC4_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.750e-31
Identity = 62/155 (40.00%), Postives = 95/155 (61.29%), Query Frame = 0
Query:   31 PANAADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNK-TLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLE-IKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
            P     + GL+ P++D P+   ++ P+GWN+FE     YDIKWQD++   E + + ++PV S   ++G LG  +++G+ LA  R  KL+ A E+  +GI  Y  + +  +  HQL  L V K KL+S++AS  +KRWGKRE+L   V+ SF PKL
Sbjct:   51 PRIVTRMGGLLEPFQDGPRSIKMMVPSGWNKFEGEVGAYDIKWQDLVDPNENIKISSTPVKSTTASIGVLGDVKALGESLASKRSAKLISAEERQTDGILFYKFDFLISDGTHQLLQLCVCKGKLWSIDASAKDKRWGKREELYNNVLGSFMPKL 205          
BLAST of Ggra6824.t1 vs. uniprot
Match: L1IBP9 (WW domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IBP9_GUITC)

HSP 1 Score: 120 bits (302), Expect = 6.230e-31
Identity = 62/155 (40.00%), Postives = 91/155 (58.71%), Query Frame = 0
Query:   33 NAADISGLVTPYRDLPKGFTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLGSAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIK----RESAHQLTLLTVNKQKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL 183
                + GL++P++D+ KGF I RP+GWN+F++    YD+KW+D+++  E V V +SPV S   +  LG  + VG  LA  +  +LV A E +  GI  Y    K    +  A ++  L VNK KL+SV A+ +EKRW KR+ L   +  SF PKL
Sbjct:   61 KVTKMGGLLSPFKDVNKGFQIFRPSGWNQFDSAPGEYDVKWEDLVEKSELVMVGSSPVKSATDVNVLGPVDKVGASLASKKKAELVEAKETERSGIRFYTFVFKAGDDKTGAREVYQLCVNKGKLWSVTATTAEKRWNKRKDLYSTIFSSFVPKL 215          
The following BLAST results are available for this feature:
BLAST of Ggra6824.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPU94.770e-9580.68PsbP-like protein 1, chloroplastic n=1 Tax=Gracila... [more]
A0A1X6NNU33.980e-5557.89PsbP domain-containing protein n=1 Tax=Porphyra um... [more]
A0A5J4YMB88.080e-5354.43PsbP-like protein 1, chloroplastic n=1 Tax=Porphyr... [more]
D4NY623.940e-4753.02Chloroplast photosystem II 23 kDa n=1 Tax=Galdieri... [more]
A0A7J7IHP72.230e-4352.00PsbP-like protein n=1 Tax=Cyanidiococcus yangmings... [more]
A0A7V5I2P94.080e-4352.26PsbP domain-containing protein n=2 Tax=cellular or... [more]
A0A7S0W0N61.080e-3241.94Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S2YI269.450e-3240.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7R9ZSC41.750e-3140.00Hypothetical protein n=2 Tax=Craspedostauros austr... [more]
L1IBP96.230e-3140.00WW domain-containing protein n=1 Tax=Guillardia th... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 42..180
e-value: 2.8E-26
score: 92.5
NoneNo IPR availableGENE3D3.40.1000.10Mog1/PsbP, alpha/beta/alpha sandwichcoord: 31..180
e-value: 4.4E-32
score: 113.3
NoneNo IPR availablePANTHERPTHR31407:SF4PSBP-LIKE PROTEIN 1, CHLOROPLASTICcoord: 13..180
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 13..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 35..183
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..34
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 44..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:624239..624790 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6824.t1Ggra6824.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 624239..624790 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6824.t1 ID=Ggra6824.t1|Name=Ggra6824.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=184bp
MTADAGLSARRVSRRAFSAWLSALPLLPLLPANAADISGLVTPYRDLPKG
FTILRPNGWNEFEAMQDNYDIKWQDVIQSLEFVTVLTSPVASNKTLGDLG
SAESVGDKLAQARGGKLVRAVEKDIEGIPAYLLEIKRESAHQLTLLTVNK
QKLYSVNASCSEKRWGKREKLLRGVVDSFRPKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP_C
IPR016123Mog1/PsbP_a/b/a-sand