Ggra6820.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6820.t1
Unique NameGgra6820.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Homology
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BLAST of Ggra6820.t1 vs. uniprot
Match: A0A2V3ISL0 (EF-hand domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISL0_9FLOR)

HSP 1 Score: 361 bits (926), Expect = 6.330e-122
Identity = 198/308 (64.29%), Postives = 235/308 (76.30%), Query Frame = 0 
Query:    1 MSKDTKLSTIASDLHSLFVKLASACLKEEPHDVEQFCLQWLANHHGLDLDSEFAITRVQSGDFREEKKSKSXXXXXXXRKNGKKAGNAEDYTTDDNQNPNELFHTDSASKGSESGPETLGRVETVAEDAQLSAPSCSLFSTAVISGHELNRKTELYRKDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQVASDALVQFVESDTERELNLTEFTRVIILFALNSFKADFESVADHMLAVATSTSEAAVLRAACGADVSDLQAADKEEQEFLREAALGMEQHVTDNIQKLREQRTPRNS 308
            MS+ +K + I S+L  LF +L  ACL+E P DV QFCLQWLA+ +G   + +  IT +QS D  + K  +        +  G       DY T+D+ +  + F +D  SK S SG   +GRVETVA ++++   SC+LFSTAVIS  EL RKT LY+KDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQVASDALVQFVESDTERELNL EFTRVII+FALN F  DF++VADHMLAVATSTSEAAVL+AA GADVS++QAADKEEQEFLR+ A G+EQ+VTDNI K+R QRTPR+S
Sbjct:    1 MSRVSKRNKIKSELQGLFAELERACLEELPEDVGQFCLQWLADRNGFHFERKATITCIQSTDSIDNKTFRPQTSRSP-KATGNDLQRVADYNTEDSGDETDGFQSDCDSKDSGSGSVVIGRVETVASESEVGTASCALFSTAVISPEELERKTSLYQKDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQVASDALVQFVESDTERELNLAEFTRVIIIFALNCFHDDFDNVADHMLAVATSTSEAAVLQAASGADVSEIQAADKEEQEFLRQTAKGIEQNVTDNILKIRVQRTPRSS 307
The following BLAST results are available for this feature:
BLAST of Ggra6820.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ISL06.330e-12264.29EF-hand domain-containing protein n=1 Tax=Gracilar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.238.10coord: 129..255
e-value: 5.7E-6
score: 28.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 91..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..126
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 170..182
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 157..192
score: 11.807551
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 152..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:614863..615804 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6820.t1Ggra6820.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 614863..615804 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6820.t1 ID=Ggra6820.t1|Name=Ggra6820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MSKDTKLSTIASDLHSLFVKLASACLKEEPHDVEQFCLQWLANHHGLDLD
SEFAITRVQSGDFREEKKSKSKRNRNRGRKNGKKAGNAEDYTTDDNQNPN
ELFHTDSASKGSESGPETLGRVETVAEDAQLSAPSCSLFSTAVISGHELN
RKTELYRKDERMKSLFRAWDGDGSGRVDFVELVLALHKFEDVASAGIDIQ
VASDALVQFVESDTERELNLTEFTRVIILFALNSFKADFESVADHMLAVA
TSTSEAAVLRAACGADVSDLQAADKEEQEFLREAALGMEQHVTDNIQKLR
EQRTPRNSHLSSN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair