Ggra6817.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6817.t1
Unique NameGgra6817.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Homology
BLAST of Ggra6817.t1 vs. uniprot
Match: A0A2V3IDW3 (Translocon-associated protein subunit gamma n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDW3_9FLOR)

HSP 1 Score: 235 bits (600), Expect = 8.830e-77
Identity = 124/172 (72.09%), Postives = 143/172 (83.14%), Query Frame = 0
Query:    1 MANDEFDGLLQDFGRRPSVARRLLYVLFAVEAVAAASFFFVRVFLIDVNASPVTLAISVLLSVVILSMSYHNLAFAHAARIRRTASPPTKGAFKGQLDRFEIAKKRFESHISSAALWYSCAYNNALFMVIAPFLGMYMLYDKLSGDLNLLVSAAAAASLAMFNSKSALKAIG 172
            MA D+ + L  DFGR+PS+ RRLLYV FA+E VA  + FFVRVFLID ++S VTL+I+  +S  +LS SYHNLAFAHA+RIRRTASPPTKGAFKG +D+F  AK RFE  IS+AALWYSCAYNNALFM++ PFL  YML DKLSGDLNLLVS AAAASLA+FNSKSALKAIG
Sbjct:    1 MATDDIELLADDFGRKPSLLRRLLYVFFALEVVAVCTVFFVRVFLIDTSSSLVTLSIAAFISAAVLSASYHNLAFAHASRIRRTASPPTKGAFKGNMDQFGAAKLRFERRISNAALWYSCAYNNALFMILTPFLATYMLADKLSGDLNLLVSGAAAASLALFNSKSALKAIG 172          
BLAST of Ggra6817.t1 vs. uniprot
Match: R7QPN5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPN5_CHOCR)

HSP 1 Score: 214 bits (545), Expect = 2.000e-68
Identity = 109/169 (64.50%), Postives = 136/169 (80.47%), Query Frame = 0
Query:    4 DEFDGLLQDFGRRPSVARRLLYVLFAVEAVAAASFFFVRVFLIDVNASPVTLAISVLLSVVILSMSYHNLAFAHAARIRRTASPPTKGAFKGQLDRFEIAKKRFESHISSAALWYSCAYNNALFMVIAPFLGMYMLYDKLSGDLNLLVSAAAAASLAMFNSKSALKAIG 172
            DEFD LL DFGRRPSV +RL Y+L ++E V   +  FVR+FL+ ++AS VTL +SVLL+ V+LS+SYHNLAFA AAR+RR  SPPTKGA+KG    +E A   FE  ISSA+LWYSCAYNNA+FM++ P LGMY+L DK++GDLNLL+S AAAA+LA+FNS +ALKAIG
Sbjct:    3 DEFDDLLDDFGRRPSVLKRLFYILLSLEPVLVTAILFVRIFLVSISASQVTLVLSVLLAAVLLSLSYHNLAFAKAARLRRAGSPPTKGAYKGDKAAYEKAMASFEGSISSASLWYSCAYNNAIFMIVTPLLGMYLLPDKVAGDLNLLLSGAAAAALALFNSNTALKAIG 171          
BLAST of Ggra6817.t1 vs. uniprot
Match: A0A5J4YZ22 (Translocon-associated protein subunit gamma n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ22_PORPP)

HSP 1 Score: 101 bits (252), Expect = 4.970e-24
Identity = 62/166 (37.35%), Postives = 98/166 (59.04%), Query Frame = 0
Query:    3 NDEFDGLLQDFGRRPSVARRLLYVLFAVEAVAAASFFFVRVFLIDVNASPVTLAISVLLSVVILSMSYHNLAFAHAARIRRTASPPTKGAFKGQLDRFEIAKKRFESHISSAALWYSCAYNNALFMV-IAPFLGMYMLYDKLSGDLNLLVSAAAAASLAMFNSKSA 167
            +DEF G   D+GR   V +RL+Y L A+  +      +VRV  +D+ AS V +  +V+++ V+LS++YHN AFA + ++R+   PP K AF+ + +  + A    E++I  +A+ YS  YNNA+F+V I PF G   L   +   +N   +   AA LA+ NS+SA
Sbjct:    7 DDEFAGFEVDYGRTAGVGKRLMYWLLAILPINLPVLLYVRVLALDLQASGVLVGATVIIASVMLSLAYHNCAFAKSVKLRKGLEPPPKSAFRNRPEEHKKACDDLEANIRKSAVLYSVGYNNAIFLVCILPF-GFQFLSSLMETPMNFATAYTFAALLALVNSRSA 171          
The following BLAST results are available for this feature:
BLAST of Ggra6817.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IDW38.830e-7772.09Translocon-associated protein subunit gamma n=1 Ta... [more]
R7QPN52.000e-6864.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YZ224.970e-2437.35Translocon-associated protein subunit gamma n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009779Translocon-associated protein subunit gammaPFAMPF07074TRAP-gammacoord: 8..162
e-value: 2.4E-10
score: 40.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 145..162
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 74..114
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..73
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 140..144
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 23..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 115..139
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..51
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 163..172
NoneNo IPR availableTMHMMTMhelixcoord: 24..46
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 114..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:605074..605592 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6817.t1Ggra6817.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 605074..605592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6817.t1 ID=Ggra6817.t1|Name=Ggra6817.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MANDEFDGLLQDFGRRPSVARRLLYVLFAVEAVAAASFFFVRVFLIDVNA
SPVTLAISVLLSVVILSMSYHNLAFAHAARIRRTASPPTKGAFKGQLDRF
EIAKKRFESHISSAALWYSCAYNNALFMVIAPFLGMYMLYDKLSGDLNLL
VSAAAAASLAMFNSKSALKAIG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009779SSR3