Ggra6817.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6817.t1
Unique NameGgra6817.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:605074..605592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6817Ggra6817Gracilaria gracilis GNS1m malegenetig00000056_pilon 605074..605592 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6817.t1.start1Ggra6817.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 605074..605076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6817.t1.CDS1Ggra6817.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 605074..605592 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6817.t1.exon1Ggra6817.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 605074..605592 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6817.t1.stop1Ggra6817.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 605590..605592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6817.t1Ggra6817.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 605074..605592 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6817.t1 ID=Ggra6817.t1|Name=Ggra6817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=173bp
MANDEFDGLLQDFGRRPSVARRLLYVLFAVEAVAAASFFFVRVFLIDVNA
SPVTLAISVLLSVVILSMSYHNLAFAHAARIRRTASPPTKGAFKGQLDRF
EIAKKRFESHISSAALWYSCAYNNALFMVIAPFLGMYMLYDKLSGDLNLL
VSAAAAASLAMFNSKSALKAIG*
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spliced messenger RNA

>Ggra6817.t1 ID=Ggra6817.t1|Name=Ggra6817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000056_pilon:605074..605592+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACGACGAGTTTGACGGGCTATTGCAGGACTTTGGGCGCCGGCC
TTCCGTGGCGCGCCGTCTTTTGTACGTGCTGTTTGCCGTCGAGGCCGTGG
CGGCGGCGTCGTTCTTCTTCGTGCGCGTGTTTCTGATCGATGTCAATGCG
TCGCCGGTCACGTTGGCCATAAGCGTGCTGCTGTCGGTCGTGATTCTGTC
CATGTCGTATCACAACCTCGCCTTTGCGCACGCTGCCCGAATTCGACGCA
CGGCATCGCCCCCCACCAAGGGCGCCTTCAAGGGGCAGTTGGATCGCTTC
GAGATCGCGAAGAAGCGCTTTGAATCGCACATCTCCAGCGCCGCATTGTG
GTACTCATGCGCTTACAATAATGCCCTGTTCATGGTGATTGCGCCGTTTC
TCGGCATGTATATGCTTTATGACAAACTTAGTGGAGACTTGAACTTGCTT
GTGTCAGCTGCCGCAGCCGCGTCATTGGCTATGTTTAATTCCAAGTCCGC
ATTGAAGGCGATTGGATAG
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protein sequence of Ggra6817.t1

>Ggra6817.t1 ID=Ggra6817.t1|Name=Ggra6817.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=173bp
MANDEFDGLLQDFGRRPSVARRLLYVLFAVEAVAAASFFFVRVFLIDVNA
SPVTLAISVLLSVVILSMSYHNLAFAHAARIRRTASPPTKGAFKGQLDRF
EIAKKRFESHISSAALWYSCAYNNALFMVIAPFLGMYMLYDKLSGDLNLL
VSAAAAASLAMFNSKSALKAIG*
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mRNA from alignment at tig00000056_pilon:605074..605592+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6817.t1 ID=Ggra6817.t1|Name=Ggra6817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp|location=Sequence derived from alignment at tig00000056_pilon:605074..605592+ (Gracilaria gracilis GNS1m male)
ATGGCGAACGACGAGTTTGACGGGCTATTGCAGGACTTTGGGCGCCGGCC
TTCCGTGGCGCGCCGTCTTTTGTACGTGCTGTTTGCCGTCGAGGCCGTGG
CGGCGGCGTCGTTCTTCTTCGTGCGCGTGTTTCTGATCGATGTCAATGCG
TCGCCGGTCACGTTGGCCATAAGCGTGCTGCTGTCGGTCGTGATTCTGTC
CATGTCGTATCACAACCTCGCCTTTGCGCACGCTGCCCGAATTCGACGCA
CGGCATCGCCCCCCACCAAGGGCGCCTTCAAGGGGCAGTTGGATCGCTTC
GAGATCGCGAAGAAGCGCTTTGAATCGCACATCTCCAGCGCCGCATTGTG
GTACTCATGCGCTTACAATAATGCCCTGTTCATGGTGATTGCGCCGTTTC
TCGGCATGTATATGCTTTATGACAAACTTAGTGGAGACTTGAACTTGCTT
GTGTCAGCTGCCGCAGCCGCGTCATTGGCTATGTTTAATTCCAAGTCCGC
ATTGAAGGCGATTGGATAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:605074..605592+

>Ggra6817.t1 ID=Ggra6817.t1|Name=Ggra6817.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=519bp|location=Sequence derived from alignment at tig00000056_pilon:605074..605592+ (Gracilaria gracilis GNS1m male)
ATGGCGAACGACGAGTTTGACGGGCTATTGCAGGACTTTGGGCGCCGGCC
TTCCGTGGCGCGCCGTCTTTTGTACGTGCTGTTTGCCGTCGAGGCCGTGG
CGGCGGCGTCGTTCTTCTTCGTGCGCGTGTTTCTGATCGATGTCAATGCG
TCGCCGGTCACGTTGGCCATAAGCGTGCTGCTGTCGGTCGTGATTCTGTC
CATGTCGTATCACAACCTCGCCTTTGCGCACGCTGCCCGAATTCGACGCA
CGGCATCGCCCCCCACCAAGGGCGCCTTCAAGGGGCAGTTGGATCGCTTC
GAGATCGCGAAGAAGCGCTTTGAATCGCACATCTCCAGCGCCGCATTGTG
GTACTCATGCGCTTACAATAATGCCCTGTTCATGGTGATTGCGCCGTTTC
TCGGCATGTATATGCTTTATGACAAACTTAGTGGAGACTTGAACTTGCTT
GTGTCAGCTGCCGCAGCCGCGTCATTGGCTATGTTTAATTCCAAGTCCGC
ATTGAAGGCGATTGGATAG
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