Ggra6805.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6805.t1
Unique NameGgra6805.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length260
Homology
BLAST of Ggra6805.t1 vs. uniprot
Match: A0A2V3IPT0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPT0_9FLOR)

HSP 1 Score: 245 bits (625), Expect = 1.890e-78
Identity = 127/234 (54.27%), Postives = 166/234 (70.94%), Query Frame = 0
Query:   26 MNCSEAAIDLRLKALQCPIPPDPSDALLIQKQICWLEDVYIRRYAIADRAPLRKTDYHSALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIVSTAIQSLRDALGLPDIENVCSADVAAAAADAVEALTCDNLTFDAELDIDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVGR 259
            M+CS+ AIDLRL AL+CPIP  P+            EDV+IRRY I  R PLR+ DY S LNAYLRLL+AP  A+AS    RNFL+++AI+L Y DNA  +NTPFDPW+S+ LP+V GV++S  V+ A++ LR  L L  ++ V +A VAAAAADA+E LT + +    E  I+ M +  +T D Q++ V C MRLL+VRRLR+LQD +N++IS MQ+ITANP TD+KLGKVGR
Sbjct:    1 MDCSDEAIDLRLSALKCPIPESPT------------EDVHIRRYPIEQREPLRRKDYRSGLNAYLRLLNAPPNAYASPKQTRNFLIELAINLQYRDNATRYNTPFDPWQSRCLPVVRGVSNSEQVARALEELRQVLQLTKVDGVSNASVAAAAADAIEVLTTEQVPLPPESVIEKMAIGFDTQDAQLRNVVCAMRLLFVRRLRSLQDNVNTLISGMQAITANPHTDSKLGKVGR 222          
BLAST of Ggra6805.t1 vs. uniprot
Match: A0A5J4XVR1 (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XVR1_9CHLO)

HSP 1 Score: 95.1 bits (235), Expect = 9.500e-20
Identity = 81/252 (32.14%), Postives = 119/252 (47.22%), Query Frame = 0
Query:   34 DLRLKALQCPIPPDP--SDALLIQKQICWLEDVYIRRYAIADRAPL---RKTDYHSALNAYLRLLDAPVEAHASAPAA-RNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIVST---------AIQSLRDALGLPDIE----------NVCSADVAAAAADA-VEALTCDNLTFDAELDIDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVGR 259
            DL LKAL+ P P      D +     I WLE+  +R+Y+I DR  L   R   +      Y++ +  P+   AS+ AA  ++LL  AI L Y+D A  FNT     +S+  P +        V T         AIQ L   L L D            N+ S  +  A  D+ + +   +  T  + LD+D  P+   T DK+      I+R+LY++ LR LQ  I+  +  +Q+ TANP TDA LG++GR
Sbjct:    5 DLLLKALKYPKPSKNLVEDDVNFASLIVWLENTKVRQYSIEDRKALSDTRNPSWDGVFRKYVKDVQCPIALEASSKAAVLDWLLSYAISLEYQDQADKFNTAALS-QSRHKPALSSSQQEQHVYTDIDDPQTSEAIQHLLKQLQLVDTNAPMESLQAARNMVSDQLLPALEDSQLSSAAREAATQLSHLDVDKFPLGFTTGDKKTDVAATILRMLYIKDLRGLQTIIDETLVNVQNYTANPKTDAALGRIGR 255          
BLAST of Ggra6805.t1 vs. uniprot
Match: A0A7D9E4V7 (UPF0568 C14orf166 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9E4V7_PARCT)

HSP 1 Score: 91.7 bits (226), Expect = 1.660e-18
Identity = 84/258 (32.56%), Postives = 112/258 (43.41%), Query Frame = 0
Query:   36 RLKAL--QCPIPPDPSDALLIQKQICWLEDVYIRRYAIADRAPLRKT---DYHSALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLP-------------IVPGVASSLIVSTAIQSLRDALGLPD--------------IENVCSADVAAAAADAVEALTCDNLTFDAELDI---DNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVG 258
            +LKAL    P   D +D       + WLED+ IR Y I DR  LR T   D+      Y++ LD PV          ++LL  A+ L Y D A+  N     WE Q+               I    A    +   I SL + L +P+              IEN  +A+V A A+   +          +E+D+    NM +  +T D  V     I+RLL+V  LR LQ  I   I A+QS TANP TD KLGKVG
Sbjct:    5 KLKALGHHSPSSFDVNDKKQFSSLVVWLEDIKIRLYPINDRTALRDTENKDWPDVFKQYMKDLDCPVNPERKEQVL-DWLLGYAVRLEYSDKASQINKT---WEEQKAKKQLEQNATEAEETIRNLKADDPNLKAGIMSLANLLKIPEHEDPLLRLHALKALIENKLTAEVQANASSQKK----------SEIDLKFFQNMKLGFDTGDSAVNEAAKILRLLHVSELRELQTSITQAIVAVQSHTANPKTDTKLGKVG 248          
BLAST of Ggra6805.t1 vs. uniprot
Match: T1ERB6 (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ERB6_HELRO)

HSP 1 Score: 89.7 bits (221), Expect = 5.470e-18
Identity = 69/211 (32.70%), Postives = 98/211 (46.45%), Query Frame = 0
Query:   58 ICWLEDVYIRRYAIADRAPLRKT---DYHSALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIVSTAIQSLRDALGLPD-------IENVCSADVAAAAADAVEALTCDNLTFDAELDIDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVG 258
            +CWLED  I  Y   DRA LRK    D+ +    YL  L  PV++        N+LL +AI L Y +        +    S   P+     +S      + SL   L +P        +  +C       + DA+E L    +   A + +D + +  ET D   +    I+RLLY++ LR LQD  N  I A Q+ITANP TD++LGKVG
Sbjct:   15 VCWLEDKRINHYQPDDRAGLRKICAGDWENHFLKYLNDLGCPVDSKEKILVI-NWLLSLAIRLEYGNKINKMKVTYGSGSSSCNPLENMDFTSEEFRAGVTSLGKMLNMPPHNDSLTLLRAICLLVKEKLSKDALERLKKQGIKQAASISLDKIDLGFETPDLITKEAGKILRLLYLKELRELQDCANEAIVAAQAITANPKTDSRLGKVG 224          
BLAST of Ggra6805.t1 vs. uniprot
Match: R7VLV1 (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VLV1_CAPTE)

HSP 1 Score: 88.2 bits (217), Expect = 2.890e-17
Identity = 73/239 (30.54%), Postives = 113/239 (47.28%), Query Frame = 0
Query:   36 RLKALQCPIPP--DPSDALLIQKQICWLEDVYIRRYAIADRAPLRKT---DYHSALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRL---PIVPGVASSLIVSTAIQSLRDALGLP-------DIENVCSADVAAAAADAVEALTCDNLTFDAELDIDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVGR 259
            +L AL  P P   + +D    +K + WLED  IR Y I DR  LR     +++ AL  YL  +  P+ AH       ++LL  A+ L Y DN   + T  +  +S      P+     +       I SL   L LP        ++ +        + DA+ ++  + +     + I+ + +  ET D   Q    ++RLLY+R LR LQ+  N  + A+Q++TA+P TD KLGKVGR
Sbjct:    5 KLTALDHPDPNGLNATDEEQFRKLMVWLEDQKIRHYKIEDRTALRNVCAGNWNDALKKYLEDISCPLRAHNRNELV-DWLLGYAVRLEYGDNTDKYRTASNNVKSHTKSGNPLDLIDFNDADSKAGILSLAAILELPPHPDHIVQLKAISILVREKLSKDAIASVQKNGIPKPNTIPIEKLSLGFETSDYISQEAAKVLRLLYIRELRDLQNSANEAVVAVQTLTADPKTDTKLGKVGR 242          
BLAST of Ggra6805.t1 vs. uniprot
Match: A0A6P8ZZE7 (RNA transcription, translation and transport factor protein isoform X1 n=3 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZZE7_THRPL)

HSP 1 Score: 85.5 bits (210), Expect = 3.780e-16
Identity = 77/245 (31.43%), Postives = 108/245 (44.08%), Query Frame = 0
Query:   33 IDLRLKALQCPIPPDPSDALLIQKQICWLEDVYIRRYAIADRAPLRKT--DYHSALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIVSTAIQSLRD----ALGLPDIENVCSADVAAAAADAVEALTCDNLTFDAELDIDNMPV------------ALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVGR 259
            I     +L+C +    SD   I+  + WLE+  IRRY I +R PL+     + +  + Y R L +P+   A A     +L+  AI L Y DNA  +        SQ +  VP V SS  +        D     + L  I N+           AV  +  + L  DA  +  N+ V              +  D  +     I+RLLY+  LR LQ  IN  I A+QSITA+P TD KLG+VGR
Sbjct:   16 ISFHCSSLRCYVTSSTSDEREIKNLVLWLENQKIRRYKIEERGPLQAEGEQWRANFDKYCRDLASPIVDGAMAEKLE-WLIGYAISLEYADNAEKYRGQTAQNISQTIVNVPKVESSNPLDNLDFESSDFKKGVIALAQILNITPHPDHLVTLKAVSKVVRERLNQDALDNPSNIIVKGKPFPFQEADLGFDMGDYVLNEAAKILRLLYIHDLRNLQTHINETIVAVQSITADPKTDTKLGQVGR 259          
BLAST of Ggra6805.t1 vs. uniprot
Match: A0A813E9G3 (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E9G3_POLGL)

HSP 1 Score: 81.6 bits (200), Expect = 1.210e-14
Identity = 69/221 (31.22%), Postives = 111/221 (50.23%), Query Frame = 0
Query:   56 KQICWLEDVYIRRYAIADRAPLRKTD--YHSALNAYLRLLDAPVEAHASAP-----AARNFLLDVAIDLHYEDN--------AALFNTPFDPWESQRLP-IVPGVASSLIVSTAIQSLRDALGLPDIENVCSADVAAAAADAVEALTCDNLTFDA-ELDIDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVGR 259
            K + WLE+  IR Y   DR PLR  +  +++A+ +Y + L  P E  +           N L+++A+   Y D         AA           QRL  ++PG+ + L+ S ++  L+        E+   AD  AA    V    C +   +A +LD+  +P+ LE  D +V++   ++RLL+   L+ LQ  IN +I+ +Q +TANP TDA+LG+VGR
Sbjct:   64 KIVLWLEEEKIRLYEKIDRKPLRDFNKAWYTAVTSYAKDLGVPAEGLSEQDFPVKLRVLNGLVNIAVHDIYRDKVEANELSLAAPQKQAGSGGPKQRLAALLPGL-NQLMASFSLPLLQ--------EDAVDADTLAALR-CVHVRVCASPDSEAGQLDLSKLPLGLEVKDPEVRQAVAVLRLLHGSELQQLQMHINHVINELQQLTANPQTDARLGRVGR 274          
BLAST of Ggra6805.t1 vs. uniprot
Match: RNA transcription, translation and transport factor protein-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04C078 (RNA transcription, translation and transport factor protein-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04C078)

HSP 1 Score: 80.9 bits (198), Expect = 1.620e-14
Identity = 69/225 (30.67%), Postives = 102/225 (45.33%), Query Frame = 0
Query:   58 ICWLEDVYIRRYAIADRAPLRKTDYHS---ALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIVSTAIQSLR--------DALGLPDIENVCSADVAAAAADAVEALTCDNLTFDAELD-------------IDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVG 258
            I WLED+ IR Y I +R  LR TD+     A   Y+  L+ PV +        ++LL  AI L Y D A+  N   + W  Q+        +S+    +I +++          L L  +  +   D       A+ A+  + +T +++ +             + NM +  +T D  V     I+RLL+V  LR LQ  I   I A+QS TANP TD KLGKVG
Sbjct:   29 IVWLEDIKIRLYKIEERTLLRATDHKDWPLAFKQYIADLECPVNSERKEQVL-DWLLGHAIRLEYADKASQIN---EMWMDQKARKQHQKNNSVETEDSIWNIQVDDPNLKAGILSLASMLKIPEHDDLLLKLQAIRAIIENKMTPESQANATSQKKSDLNAKFLQNMSLGFDTGDSAVNEAAKILRLLHVSELRELQTSITQAIVAVQSHTANPKTDTKLGKVG 249          
BLAST of Ggra6805.t1 vs. uniprot
Match: RNA transcription, translation and transport factor protein n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A936E (RNA transcription, translation and transport factor protein n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A936E)

HSP 1 Score: 80.1 bits (196), Expect = 3.100e-14
Identity = 68/229 (29.69%), Postives = 105/229 (45.85%), Query Frame = 0
Query:   58 ICWLEDVYIRRYAIADRAPLRKT---DYHSALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPF---DPWESQRLPIVPGVASSLI----VSTAIQSLRDALGLPDIENVCSADVAAAAADAVEALTCDNLTFDAE-----------------LDIDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVGR 259
            + WLED  IR Y I DR  LR     ++  AL  YL  L+ P+++   + +  ++LL  AI L Y DNA  +N+P     P  S +  +   + +  +    +   + SL   L LP+  +            A++AL    L+ +                   + +    +  +T D  V     I+RLL++  LR LQ +IN  I  +QSITANP TD +LG+VGR
Sbjct:   29 VVWLEDQKIRLYKIEDREALRDVKNENWSKALTKYLADLECPLKSKQKS-SVLDWLLAHAIRLEYADNAQTYNSPAKESQPLASDKXDVSEELLNLTVDNPDLKAGVSSLARLLNLPEHHDHY------VLLQAIQALVESRLSKEGIQESQQKXXXXXXEPSDIISLRTSDLGFDTGDSAVNEAAKILRLLHISELRDLQTKINEAIVRVQSITANPKTDQRLGQVGR 250          
BLAST of Ggra6805.t1 vs. uniprot
Match: A0A8B7PMG3 (UPF0568 protein C14orf166 homolog isoform X1 n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PMG3_HYAAZ)

HSP 1 Score: 79.0 bits (193), Expect = 7.940e-14
Identity = 74/248 (29.84%), Postives = 114/248 (45.97%), Query Frame = 0
Query:   36 RLKALQCPIPPDPS-----DALLIQKQICWLEDVYIRRYAIADRAPLRKTD---YHSALNAYLRLLDAPVEAHASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIVST---AIQSLRDALG-LPDIENVCSADVAAAAADAVEALTCDNLTFDA------------ELDIDNMPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPSTDAKLGKVGR 259
            +LKAL   + PDP      D   I++ + WLED  IR Y I DR  L++T    + +    YL  L  P    A   +  ++LL +A+ L Y +N   ++       + +    P V ++  +     +    RD +  L +I N+ +         AV  L    L+ +A               I +  +  E  DK++     ++RLLY++ LR LQ  IN  I A Q+ITANP TD++LGKVGR
Sbjct:    5 KLKAL---LHPDPDHFNIKDDQSIRQLVVWLEDHKIRHYKIEDRTALKQTKDEKWPNVFKKYLNDLKCPHPPQA-LHSVTDWLLGLAVQLEYGENVEKYSAQKAAHVASQRSAAPQVVNTNPLDALDFSCPEFRDGVNKLAEILNIQAHPDHLVTLKAVSHLVKTRLSQEALASPGEVIHQGKAYPIFDADLGFEMGDKRLNDAGKVLRLLYIQDLRKLQTSINECIVATQTITANPKTDSRLGKVGR 248          
The following BLAST results are available for this feature:
BLAST of Ggra6805.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPT01.890e-7854.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A5J4XVR19.500e-2032.14Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
A0A7D9E4V71.660e-1832.56UPF0568 C14orf166 homolog n=1 Tax=Paramuricea clav... [more]
T1ERB65.470e-1832.70Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
R7VLV12.890e-1730.54Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A6P8ZZE73.780e-1631.43RNA transcription, translation and transport facto... [more]
A0A813E9G31.210e-1431.22Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
RNA transcription, translation and transport factor protein-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04C0781.620e-1430.67RNA transcription, translation and transport facto... [more]
RNA transcription, translation and transport factor protein n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A936E3.100e-1429.69RNA transcription, translation and transport facto... [more]
A0A8B7PMG37.940e-1429.84UPF0568 protein C14orf166 homolog isoform X1 n=2 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 227..247
NoneNo IPR availablePANTHERPTHR15924:SF9RNA TRANSCRIPTION, TRANSLATION AND TRANSPORT FACTOR PROTEINcoord: 37..195
coord: 196..259
IPR019265RNA transcription, translation and transport factor proteinPFAMPF10036RLLcoord: 36..259
e-value: 2.9E-36
score: 125.6
IPR019265RNA transcription, translation and transport factor proteinPANTHERPTHR15924CLEcoord: 37..195
coord: 196..259

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:556456..557293 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6805.t1Ggra6805.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 556456..557293 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6805.t1 ID=Ggra6805.t1|Name=Ggra6805.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MKPPQHLPPKLLRPQHRRRTFASPAMNCSEAAIDLRLKALQCPIPPDPSD
ALLIQKQICWLEDVYIRRYAIADRAPLRKTDYHSALNAYLRLLDAPVEAH
ASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIV
STAIQSLRDALGLPDIENVCSADVAAAAADAVEALTCDNLTFDAELDIDN
MPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPST
DAKLGKVGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019265RTRAF