Ggra6805.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6805.t1
Unique NameGgra6805.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:556456..557293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_08826T0
Preferred nameC14orf166
PFAMsRLL
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K15433,ko:K18532
KEGG ReactionR00127,R01547
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008
KEGG ModuleM00049
GOsGO:0000394,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001933,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006388,GO:0006396,GO:0006399,GO:0006403,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0015630,GO:0015931,GO:0016070,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033673,GO:0034470,GO:0034641,GO:0034660,GO:0042325,GO:0042326,GO:0042802,GO:0043086,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045859,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070063,GO:0071702,GO:0071704,GO:0071705,GO:0072669,GO:0072686,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue6.51e-21
EggNOG OGsKOG4380@1|root,KOG4380@2759|Eukaryota
EC2.7.4.3
DescriptionRNA polymerase II complex binding
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03016,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6805Ggra6805Gracilaria gracilis GNS1m malegenetig00000056_pilon 556456..557293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6805.t1Ggra6805.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 556456..557293 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6805.t1.start1Ggra6805.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 556456..556458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6805.t1.CDS1Ggra6805.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 556456..556603 +
Ggra6805.t1.CDS2Ggra6805.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 556662..557293 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6805.t1.exon1Ggra6805.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 556456..556603 +
Ggra6805.t1.exon2Ggra6805.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 556662..557293 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6805.t1.intron1Ggra6805.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 556604..556661 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6805.t1.stop1Ggra6805.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 557291..557293 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6805.t1 ID=Ggra6805.t1|Name=Ggra6805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=260bp
MKPPQHLPPKLLRPQHRRRTFASPAMNCSEAAIDLRLKALQCPIPPDPSD
ALLIQKQICWLEDVYIRRYAIADRAPLRKTDYHSALNAYLRLLDAPVEAH
ASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIV
STAIQSLRDALGLPDIENVCSADVAAAAADAVEALTCDNLTFDAELDIDN
MPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPST
DAKLGKVGR*
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spliced messenger RNA

>Ggra6805.t1 ID=Ggra6805.t1|Name=Ggra6805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=780bp|location=Sequence derived from alignment at tig00000056_pilon:556456..557293+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCGCCGCAACATCTGCCGCCCAAGCTTCTGCGGCCGCAACATCG
GCGTCGCACATTCGCTTCACCCGCGATGAACTGCTCCGAAGCGGCCATCG
ACCTGCGCTTGAAAGCCCTTCAATGCCCCATACCACCCGATCCCTCAGAC
GCGCTCCTTATTCAGAAGCAAATTTGCTGGCTGGAAGACGTTTACATCCG
CCGCTACGCCATCGCCGACCGCGCCCCGCTTCGAAAAACGGATTATCACT
CTGCGTTGAACGCGTATCTGCGACTGCTAGACGCGCCTGTCGAAGCGCAC
GCTTCTGCACCCGCCGCCAGAAACTTTTTGCTGGACGTTGCTATCGATCT
TCATTACGAGGACAATGCCGCTCTGTTTAACACGCCGTTTGATCCGTGGG
AGTCTCAAAGGCTTCCCATAGTTCCAGGTGTGGCGAGCTCACTCATTGTA
TCCACCGCTATACAGTCGTTGAGAGATGCTTTGGGGCTCCCTGACATTGA
AAACGTTTGCAGCGCCGATGTGGCCGCCGCCGCTGCGGATGCCGTTGAGG
CACTCACGTGTGATAACTTGACGTTTGACGCAGAACTGGATATTGATAAC
ATGCCAGTCGCGCTCGAGACCGACGACAAGCAAGTTCAACGCGTCACCTG
CATCATGCGTCTTCTCTACGTTCGGCGCCTACGCGCTCTGCAAGACGAGA
TCAACAGCATCATCTCTGCGATGCAATCCATAACAGCCAATCCAAGTACC
GATGCCAAGTTAGGCAAGGTGGGACGCTAA
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protein sequence of Ggra6805.t1

>Ggra6805.t1 ID=Ggra6805.t1|Name=Ggra6805.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=260bp
MKPPQHLPPKLLRPQHRRRTFASPAMNCSEAAIDLRLKALQCPIPPDPSD
ALLIQKQICWLEDVYIRRYAIADRAPLRKTDYHSALNAYLRLLDAPVEAH
ASAPAARNFLLDVAIDLHYEDNAALFNTPFDPWESQRLPIVPGVASSLIV
STAIQSLRDALGLPDIENVCSADVAAAAADAVEALTCDNLTFDAELDIDN
MPVALETDDKQVQRVTCIMRLLYVRRLRALQDEINSIISAMQSITANPST
DAKLGKVGR*
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mRNA from alignment at tig00000056_pilon:556456..557293+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6805.t1 ID=Ggra6805.t1|Name=Ggra6805.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=838bp|location=Sequence derived from alignment at tig00000056_pilon:556456..557293+ (Gracilaria gracilis GNS1m male)
ATGAAGCCGCCGCAACATCTGCCGCCCAAGCTTCTGCGGCCGCAACATCG
GCGTCGCACATTCGCTTCACCCGCGATGAACTGCTCCGAAGCGGCCATCG
ACCTGCGCTTGAAAGCCCTTCAATGCCCCATACCACCCGATCCCTCAGGT
GAGTTTCCCGCAGCCATCACGCCAATCCATCCTTCTCCCCGCTAACACCC
CGTCAGACGCGCTCCTTATTCAGAAGCAAATTTGCTGGCTGGAAGACGTT
TACATCCGCCGCTACGCCATCGCCGACCGCGCCCCGCTTCGAAAAACGGA
TTATCACTCTGCGTTGAACGCGTATCTGCGACTGCTAGACGCGCCTGTCG
AAGCGCACGCTTCTGCACCCGCCGCCAGAAACTTTTTGCTGGACGTTGCT
ATCGATCTTCATTACGAGGACAATGCCGCTCTGTTTAACACGCCGTTTGA
TCCGTGGGAGTCTCAAAGGCTTCCCATAGTTCCAGGTGTGGCGAGCTCAC
TCATTGTATCCACCGCTATACAGTCGTTGAGAGATGCTTTGGGGCTCCCT
GACATTGAAAACGTTTGCAGCGCCGATGTGGCCGCCGCCGCTGCGGATGC
CGTTGAGGCACTCACGTGTGATAACTTGACGTTTGACGCAGAACTGGATA
TTGATAACATGCCAGTCGCGCTCGAGACCGACGACAAGCAAGTTCAACGC
GTCACCTGCATCATGCGTCTTCTCTACGTTCGGCGCCTACGCGCTCTGCA
AGACGAGATCAACAGCATCATCTCTGCGATGCAATCCATAACAGCCAATC
CAAGTACCGATGCCAAGTTAGGCAAGGTGGGACGCTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:556456..557293+

>Ggra6805.t1 ID=Ggra6805.t1|Name=Ggra6805.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=780bp|location=Sequence derived from alignment at tig00000056_pilon:556456..557293+ (Gracilaria gracilis GNS1m male)
ATGAAGCCGCCGCAACATCTGCCGCCCAAGCTTCTGCGGCCGCAACATCG
GCGTCGCACATTCGCTTCACCCGCGATGAACTGCTCCGAAGCGGCCATCG
ACCTGCGCTTGAAAGCCCTTCAATGCCCCATACCACCCGATCCCTCAGAC
GCGCTCCTTATTCAGAAGCAAATTTGCTGGCTGGAAGACGTTTACATCCG
CCGCTACGCCATCGCCGACCGCGCCCCGCTTCGAAAAACGGATTATCACT
CTGCGTTGAACGCGTATCTGCGACTGCTAGACGCGCCTGTCGAAGCGCAC
GCTTCTGCACCCGCCGCCAGAAACTTTTTGCTGGACGTTGCTATCGATCT
TCATTACGAGGACAATGCCGCTCTGTTTAACACGCCGTTTGATCCGTGGG
AGTCTCAAAGGCTTCCCATAGTTCCAGGTGTGGCGAGCTCACTCATTGTA
TCCACCGCTATACAGTCGTTGAGAGATGCTTTGGGGCTCCCTGACATTGA
AAACGTTTGCAGCGCCGATGTGGCCGCCGCCGCTGCGGATGCCGTTGAGG
CACTCACGTGTGATAACTTGACGTTTGACGCAGAACTGGATATTGATAAC
ATGCCAGTCGCGCTCGAGACCGACGACAAGCAAGTTCAACGCGTCACCTG
CATCATGCGTCTTCTCTACGTTCGGCGCCTACGCGCTCTGCAAGACGAGA
TCAACAGCATCATCTCTGCGATGCAATCCATAACAGCCAATCCAAGTACC
GATGCCAAGTTAGGCAAGGTGGGACGCTAA
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