Ggra6804.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6804.t1
Unique NameGgra6804.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Homology
BLAST of Ggra6804.t1 vs. uniprot
Match: A0A2V3IPT6 (Thioredoxin X, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPT6_9FLOR)

HSP 1 Score: 179 bits (455), Expect = 4.690e-55
Identity = 96/162 (59.26%), Postives = 116/162 (71.60%), Query Frame = 0
Query:    1 MHSSSAFVTSFAPFRRSNTLRASPLSSGATCPAVRRTRPARKHA---TIRAS---TPLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYILEHM 156
            M S+ AF+       RS   R + ++  A     RR R A  H    TIRA+    P+EV  +TFE  V+K S+T PVLVDFYA WCGPCKL+APLMDWAAAE+DG LKV KIDTEKNE+FV++Y IRGLPTFAVF+ GTAYGL+EGAMGK EL++YI E+M
Sbjct:    1 MSSTPAFLAPLTLAPRSAAFRTNAIARPALVGRHRRARNAVLHQQRLTIRAAEPAVPVEVIDETFENEVLKTSETLPVLVDFYAEWCGPCKLVAPLMDWAAAEFDGQLKVVKIDTEKNERFVNDYTIRGLPTFAVFKNGTAYGLREGAMGKAELERYITEYM 162          
BLAST of Ggra6804.t1 vs. uniprot
Match: R7QJF9 (Thioredoxin TRX n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJF9_CHOCR)

HSP 1 Score: 140 bits (353), Expect = 1.280e-39
Identity = 64/114 (56.14%), Postives = 87/114 (76.32%), Query Frame = 0
Query:   43 HATIRAS-TPLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYILEH 155
            H+ ++ S  PL++ S+ FE  V+K     PVLVDFYA WCGPCKL++PLMDWAA E+ G LKV K+DT+K++  +  Y+IRGLPTFAVF+ G A+G++EGAMGK  L+ YIL++
Sbjct:   45 HSVVKCSWKPLDITSENFESDVLKSDK--PVLVDFYAEWCGPCKLMSPLMDWAATEFKGKLKVVKVDTDKDDVLIDTYSIRGLPTFAVFKDGEAFGVREGAMGKPALEDYILKY 156          
BLAST of Ggra6804.t1 vs. uniprot
Match: M2XHT7 (Thioredoxin 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHT7_GALSU)

HSP 1 Score: 124 bits (312), Expect = 2.630e-33
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 0
Query:   37 TRPARKHATIRASTPLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYILEHM 156
            T+  ++  ++   T +EVD   FE+ V++     PVLVDF+A WCGPCKL+ PL+DW  +EY G LKV KIDT+KN ++V +Y +RGLPT  +F+ G      EGA+GK  +QQYI +H+
Sbjct:   47 TKHYKRPNSLVVMTVVEVDDTHFEQQVLQSQ--IPVLVDFHADWCGPCKLVTPLLDWLVSEYGGKLKVVKIDTDKNPRYVKQYDVRGLPTLIIFQDGRLVASSEGALGKKGIQQYIEKHL 164          
BLAST of Ggra6804.t1 vs. uniprot
Match: A0A7S0BHJ8 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHJ8_9RHOD)

HSP 1 Score: 125 bits (313), Expect = 3.250e-33
Identity = 71/142 (50.00%), Postives = 92/142 (64.79%), Query Frame = 0
Query:   21 RASPLSSGATCPAVRRTRP----ARKHATIRASTPLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYILEHMKD 158
            R S L S A+    +R+R      R+ +T+      EV  D+F+  V+ +SD  PVLVDFYAAWCGPCKLIAP+MDW A+EY+G L+V KIDTEK   FV EY+I GLPT A+F+ G      EGA+GK    Q +L+ +KD
Sbjct:   48 RGSFLGSSASSKCPKRSRGQVGGVRRRSTLSMKAVSEVSKDSFQGEVM-ESDL-PVLVDFYAAWCGPCKLIAPVMDWCASEYEGKLRVVKIDTEKYPNFVREYSIHGLPTLAIFKNGENISQIEGAIGK----QKVLDLLKD 183          
BLAST of Ggra6804.t1 vs. uniprot
Match: A0A5J4Z7X6 (Thioredoxin X, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7X6_PORPP)

HSP 1 Score: 123 bits (309), Expect = 6.660e-33
Identity = 64/120 (53.33%), Postives = 77/120 (64.17%), Query Frame = 0
Query:   40 ARKHATIRASTPLE-------VDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYI 152
            A + +TIR   PL        V+ D F+E V+K S  TPVLVDFYA WCGPCKL+APLMDWAA+ Y   LKV K+DTEKN+ FV +Y I GLPT AVF  G      EGAM K  + + +
Sbjct:   40 AAQRSTIRRVAPLRMVSKVGTVEGDAFDEEVLKSS--TPVLVDFYADWCGPCKLMAPLMDWAASNYGDKLKVVKVDTEKNQNFVRDYKIHGLPTLAVFVNGENVAQVEGAMSKAAITELL 157          
BLAST of Ggra6804.t1 vs. uniprot
Match: A0A1X6PEN8 (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEN8_PORUM)

HSP 1 Score: 120 bits (300), Expect = 1.400e-31
Identity = 66/132 (50.00%), Postives = 88/132 (66.67%), Query Frame = 0
Query:   32 PAVRRTRPARK----HATIRAST-PLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYILEHMKD 158
            PAVR  RPAR+      T+ A+  P++V +D+F+ A + QSD  PVLVD YA WCGPCKL+APLMD  A +  G LKV KIDTE+   FV +Y + GLPTF V + G    ++EGAMGK +L +Y+  H+ +
Sbjct:   33 PAVR--RPARRVRAGRVTVTAAAKPVDVTADSFD-AEVMQSDV-PVLVDMYAEWCGPCKLVAPLMDLLATDLAGKLKVVKIDTEQYPAFVKKYKVHGLPTFMVVKAGEVLNIQEGAMGKAKLVEYVETHLPE 160          
BLAST of Ggra6804.t1 vs. uniprot
Match: A0A150GYL5 (Thioredoxin domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GYL5_GONPE)

HSP 1 Score: 115 bits (289), Expect = 3.510e-30
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 0
Query:   38 RPA-RKHATIRASTPLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKG--TAYGLKEGAMGKNELQQYILEH 155
            RPA R H ++  +    +++ +F+  V+K     PVLVDF+A+WCGPCKL+APLMDWA  EYDG LKV KI+ +KN + +++Y + GLPT  VF+ G   A   +EGA+ K  LQQY+ +H
Sbjct:   22 RPAVRIHRSLPVTRVANIETASFDAEVLKSDK--PVLVDFWASWCGPCKLVAPLMDWAEKEYDGKLKVVKIEHDKNPELIAKYKVYGLPTLIVFKDGEEVAGSKREGAITKVLLQQYLSKH 140          
BLAST of Ggra6804.t1 vs. uniprot
Match: A0A7Y1ZJW9 (Thioredoxin n=1 Tax=Halioglobus sp. TaxID=2024834 RepID=A0A7Y1ZJW9_9GAMM)

HSP 1 Score: 112 bits (280), Expect = 3.000e-29
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 0
Query:   52 LEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYILE 154
            + V  DTF+  V+      PVLVDF+A WCGPCK+IAP++D  AAEYDG LKVCK+D + N     ++ IRG+PT  VF+ G A   K GA+ K +L ++I E
Sbjct:    6 VHVSDDTFDNEVLNSD--VPVLVDFWAEWCGPCKMIAPVLDEIAAEYDGKLKVCKVDVDANPDIPPKFGIRGIPTLIVFKGGNAEATKVGALSKTQLTEFIAE 106          
BLAST of Ggra6804.t1 vs. uniprot
Match: D8TPZ8 (Thioredoxin domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TPZ8_VOLCA)

HSP 1 Score: 113 bits (283), Expect = 3.170e-29
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0
Query:   54 VDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGT--AYGLKEGAMGKNELQQYILEH 155
            V    FEE V+K    TPVLVDF+AAWCGPCKL+APLMDWA  EY+G LKV KI+ + N Q +++Y + GLPT  VF+ G   A   +EGA+ K  L+QY+ +H
Sbjct:   41 VTEAVFEEQVLKAD--TPVLVDFWAAWCGPCKLVAPLMDWAEKEYNGKLKVVKIEHDSNPQLIAKYKVYGLPTLIVFKDGEEIAGSKREGAITKALLEQYLSKH 142          
BLAST of Ggra6804.t1 vs. uniprot
Match: X1BL46 (Thioredoxin domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1BL46_9ZZZZ)

HSP 1 Score: 109 bits (273), Expect = 3.440e-28
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 0
Query:   56 SDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDGSLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQYILE 154
            SD   +A +  SD  PVLVDF+A WCGPCK+IAP++D  A EYDG LK+CK+D + N   VS + IRG+PT  VF+ G     K GA+ K++L +YI E
Sbjct:    9 SDATFDAEVLNSDI-PVLVDFWAEWCGPCKMIAPVLDEIAIEYDGRLKICKVDADANPDIVSRFGIRGIPTLIVFKDGNPEATKTGALSKSQLTEYIDE 106          
The following BLAST results are available for this feature:
BLAST of Ggra6804.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPT64.690e-5559.26Thioredoxin X, chloroplastic n=1 Tax=Gracilariopsi... [more]
R7QJF91.280e-3956.14Thioredoxin TRX n=1 Tax=Chondrus crispus TaxID=276... [more]
M2XHT72.630e-3347.50Thioredoxin 1 n=1 Tax=Galdieria sulphuraria TaxID=... [more]
A0A7S0BHJ83.250e-3350.00Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z7X66.660e-3353.33Thioredoxin X, chloroplastic n=1 Tax=Porphyridium ... [more]
A0A1X6PEN81.400e-3150.00Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
A0A150GYL53.510e-3047.93Thioredoxin domain-containing protein n=1 Tax=Goni... [more]
A0A7Y1ZJW93.000e-2949.51Thioredoxin n=1 Tax=Halioglobus sp. TaxID=2024834 ... [more]
D8TPZ83.170e-2953.85Thioredoxin domain-containing protein n=1 Tax=Volv... [more]
X1BL463.440e-2851.52Thioredoxin domain-containing protein n=1 Tax=mari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 72..80
score: 63.02
coord: 120..131
score: 34.31
coord: 80..89
score: 67.78
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 52..160
e-value: 5.9E-29
score: 102.2
NoneNo IPR availablePANTHERPTHR45663:SF22THIOREDOXIN X, CHLOROPLASTICcoord: 22..157
NoneNo IPR availablePANTHERPTHR45663GEO12009P1coord: 22..157
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..160
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22
NoneNo IPR availableCDDcd02947TRX_familycoord: 57..152
e-value: 6.70512E-30
score: 102.636
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 53..152
e-value: 7.2E-27
score: 93.4
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 25..157
score: 12.687143
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 73..91
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 49..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:555735..556300 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6804.t1Ggra6804.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 555735..556300 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6804.t1 ID=Ggra6804.t1|Name=Ggra6804.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MHSSSAFVTSFAPFRRSNTLRASPLSSGATCPAVRRTRPARKHATIRAST
PLEVDSDTFEEAVIKQSDTTPVLVDFYAAWCGPCKLIAPLMDWAAAEYDG
SLKVCKIDTEKNEQFVSEYAIRGLPTFAVFRKGTAYGLKEGAMGKNELQQ
YILEHMKDDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR036249Thioredoxin-like_sf