Ggra6791.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6791.t1
Unique NameGgra6791.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length669
Homology
BLAST of Ggra6791.t1 vs. uniprot
Match: A0A2V3IPR1 (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR1_9FLOR)

HSP 1 Score: 203 bits (516), Expect = 1.010e-52
Identity = 182/572 (31.82%), Postives = 250/572 (43.71%), Query Frame = 0
Query:   67 VERDAPQPALHAADAREQQLADDVNTSSGRYFSAPQPWQKRKIDKHKKKPAT--QLFCDVCDVTVNSQKTMDMHIKGRAHRTKLSQRRFAAANKELDRPYQELHRRTLAEMGISL---------DSAHHNAPQRVQSQPPAA--------------------DADAVAAAAPV------VMEASRXXXXDVHAADVRPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPANDDRMQIDSDGASPPASAXXXXXXXXXXXXXXXXXXXXXXXPAVRSPP--RLAAPPCVPTRHLASLSLTRAVGGAMDANSSENSTAPSTPRLRSGEXXXXXXXXXXXXXXXXXXXXVDGAAGAVRMEPV---------MKPIPWDPYVREFKPELVGKYGGRVPQDLLDARMSLSEWRELRRAVFEKGDDVDKLAFKIMAEMLLSPTLGVREDALTHMNNAMKKMKNVHYYSRETGWYMAMSNVPEKLWKREARFVHGDVQWMKQQSAEDKALHLICENLHYMFDQG 590
            V  ++P   LH    R Q   DD N  +GRYF +   W+ RK ++ KK   +  +L+CD+C +    QK+M  H+KGRAH+ K+ Q+   + NKELDR Y+++  ++ AE+   +         DSA  +  QR    P A+                    D D +AA  P        +E ++    D+ +   +  +                                                                                   P   +  +  +   +PP+                           V +PP  RL + P  P                     SE   +PS        XXXXXXXXXXXXXXXXX   V G+ GA   + V         +KP+ WDPY+  F P LVGK G RVP   LDA  S+SEWRE+R  VFEKGDDVDKLAFK+M E+LLSPTLG++  AL H++ A+KK    HYYS+ TG Y    ++ +K+WKRE RF+ GD +WMK+QS EDKA+HL CEN+HY F+QG
Sbjct:  136 VPENSPDAELHNPVGRTQ---DDDNGKTGRYFQSTS-WRDRKQNRRKKTAGSVNRLYCDLCGIYCTGQKSMAAHLKGRAHKGKVGQKELDSINKELDRVYEDIDMKSRAEIQQRMEEKRRLDAADSAVPSVEQRNIETPNASRPTQDVPLDPTEDVFGDDDMDIDTIAAPQPSGVPQRSSLEENQPTRTDIQSTAAQGNNEQRASESIQRMHDKEAPVTDAPAQNAPQSSSNVGSHKTALEPEKRPSEGMSSATKKSSGMRERSPPRAQEPERSELPRATERAPKEGENAKEATPTVAPPSLR-------------------------VDAPPAIRLRSEPISPXXXXXXXXXXXXXXXXXXXXXSEQPRSPSXXXXXXXXXXXXXXXXXXXXXXXXXANNV-GSVGAGVSQNVTGAAVATNRVKPVAWDPYLSMFNPALVGKEGKRVPDAFLDAVPSMSEWREMRHCVFEKGDDVDKLAFKLMQEILLSPTLGIQASALDHLDRAIKKHGAAHYYSKATGGYSYRKDLADKMWKRERRFIEGDEKWMKEQSDEDKAMHLFCENVHYAFEQG 677          
BLAST of Ggra6791.t1 vs. uniprot
Match: R7QP37 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP37_CHOCR)

HSP 1 Score: 87.4 bits (215), Expect = 2.920e-14
Identity = 59/187 (31.55%), Postives = 89/187 (47.59%), Query Frame = 0
Query:  466 VPQDLLDARMSLSEWRELRRAVFEKGDDVDKLAFKIMAEMLLSPTLGVREDALTHMNNAMKKMKNVHYYSRETGWYMAMSNVPEKLWKREARF---VHGDVQWMKQQSAEDKALHLICENLHYMFDQGEDYEVVADKAHFSALPFRGGVTGWRSGVSKGIDRDGGRGVGDENAVEKDELFEQ-IHQF 648
            V +  L+  M ++EWRELR +V     DVDKLA+K+M E++LSP LG+ E  L  ++ AM    N HY +   G +  +S+ P  L + + ++   +  D  W + Q+ E  AL    +NL Y FD               A P RG           G+  DG      ++AV  D L+ + IH +
Sbjct:  414 VSRGYLNTPMPVTEWRELRHSVLSGTSDVDKLAYKMMQELVLSPVLGINETLLAPLSKAMMSAVNKHYVTPH-GIFAKLSDFPTGLLRMDPKYNSELKADADWSQYQTPEYLALCQFRDNLEYTFDNHRHQTKPTSNLRSDAPP-RGSFGARNQRKGPGVPLDGMSSPRYQDAVATDPLYTKLIHHY 598          
The following BLAST results are available for this feature:
BLAST of Ggra6791.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IPR11.010e-5231.82C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
R7QP372.920e-1431.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 646..666
NoneNo IPR availablePFAMPF12874zf-metcoord: 121..144
e-value: 6.4E-7
score: 29.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 101..151
e-value: 1.9E-9
score: 38.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..426
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..404
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..370
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..55
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 117..151
e-value: 1.8E-7
score: 40.8
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 110..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:527021..529027 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6791.t1Ggra6791.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 527021..529027 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6791.t1 ID=Ggra6791.t1|Name=Ggra6791.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=669bp
MGTLRDDERAPPTMDDNNAIIPVPDDCDMPDISWEYHDNPEQPPPPSPPP
PSRADEKRPAAAAPRAVERDAPQPALHAADAREQQLADDVNTSSGRYFSA
PQPWQKRKIDKHKKKPATQLFCDVCDVTVNSQKTMDMHIKGRAHRTKLSQ
RRFAAANKELDRPYQELHRRTLAEMGISLDSAHHNAPQRVQSQPPAADAD
AVAAAAPVVMEASRPVVADVHAADVRPASPSSPAMRSPPPPPVLSTPPPP
VRSTPPPPPMRSTPPPPMRSTPPPPMRSTPPPPMRSTPPPPMGSTPPLPM
RSTPPPPVERVRPANDDRMQIDSDGASPPASAAAPHASTALPHASTAPPH
ASMAAPAVRSPPRLAAPPCVPTRHLASLSLTRAVGGAMDANSSENSTAPS
TPRLRSGEPISPRLRSERAAAPRLRSERVDGAAGAVRMEPVMKPIPWDPY
VREFKPELVGKYGGRVPQDLLDARMSLSEWRELRRAVFEKGDDVDKLAFK
IMAEMLLSPTLGVREDALTHMNNAMKKMKNVHYYSRETGWYMAMSNVPEK
LWKREARFVHGDVQWMKQQSAEDKALHLICENLHYMFDQGEDYEVVADKA
HFSALPFRGGVTGWRSGVSKGIDRDGGRGVGDENAVEKDELFEQIHQFLV
DEKMKAQQQQQQQQQQGG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR036236Znf_C2H2_sf