Ggra6784.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6784.t1
Unique NameGgra6784.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length193
Homology
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A7S3USE8 (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 4.750e-14
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 0
Query:   74 YDEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            YDEGPPE+++E G F+HPC+GEMVYK+T    VP FNA  YLENKT+I
Sbjct:   13 YDEGPPEYVVELGDFMHPCEGEMVYKLTN-EMVPYFNAGAYLENKTKI 59          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A7S3UFR1 (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFR1_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 1.800e-11
Identity = 29/48 (60.42%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   74 YDEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            YD+GPP+ ++E G+++H C+GE V KMT A +VP FNAA+YLENKTQ+
Sbjct:    9 YDQGPPDVVVEAGTWIHACEGESVCKMTNA-KVPHFNAAIYLENKTQV 55          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A6H5KV55 (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.930e-11
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 0
Query:   74 YDEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            YD+GPP+ ++E G F+HPC+ EMVYK+T  S VP FNA  YL+NKT++
Sbjct:   28 YDDGPPDEIVELGEFMHPCEDEMVYKLTN-SMVPYFNAGAYLDNKTKV 74          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A7S3W219 (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W219_9SPIT)

HSP 1 Score: 67.8 bits (164), Expect = 4.100e-11
Identity = 27/48 (56.25%), Postives = 39/48 (81.25%), Query Frame = 0
Query:   74 YDEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            YDEGPPE ++E G+FLHPC+G+M+ K T  +++P FNA +YLENK+ +
Sbjct:   41 YDEGPPESVVEIGTFLHPCEGDMIIKSTN-TKIPYFNAPIYLENKSDV 87          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A7S3BT14 (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BT14_9VIRI)

HSP 1 Score: 67.0 bits (162), Expect = 5.330e-11
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   74 YDEGPPEHLIETGSFLHPCQGEMVYKMTTA-SQVPKFNAAVYLENKTQI 121
            YD GPP+H++E G++ H C+GE V K+TT  ++VP FNA +YLENKTQ+
Sbjct:   14 YDAGPPDHVLEAGTYQHACEGEAVCKLTTEQNKVPHFNAPIYLENKTQV 62          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A177WEL2 (H/ACA ribonucleoprotein complex subunit n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WEL2_BATDL)

HSP 1 Score: 67.4 bits (163), Expect = 5.490e-11
Identity = 28/47 (59.57%), Postives = 40/47 (85.11%), Query Frame = 0
Query:   76 EGPPEHLIETGSFLHPCQGEMVY-KMTTASQVPKFNAAVYLENKTQI 121
            +GPP++++E GSF+HPC+GEMV  ++ T S++P FNA +YLENKTQI
Sbjct:   32 QGPPDYVVEMGSFMHPCEGEMVCARLPTQSKIPYFNAPIYLENKTQI 78          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A1R1XIL3 (H/ACA ribonucleoprotein complex subunit n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XIL3_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 8.460e-11
Identity = 28/51 (54.90%), Postives = 42/51 (82.35%), Query Frame = 0
Query:   71 NNRYDEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            +N Y+ GPP+ ++E GSF+H C+G+MV K +T+++VP FNA VYL+NKTQ+
Sbjct:   53 SNNYNSGPPDSVLEMGSFMHDCEGDMVCK-STSTKVPFFNAPVYLQNKTQV 102          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A7J7QEC7 (H/ACA ribonucleoprotein complex subunit n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QEC7_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 1.020e-10
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0
Query:   75 DEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            D+GPPE ++E GSF HPC+GE V K+T   ++P FNA +YLENKTQI
Sbjct:   46 DQGPPEEVVEAGSFSHPCEGEAVVKLTN-EKIPYFNAPIYLENKTQI 91          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A835Y7M2 (H/ACA ribonucleoprotein complex subunit n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y7M2_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.210e-10
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 0
Query:   74 YDEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            YD GPPE ++E GSF+HPC+GE V K+T   ++P FNA ++LENKTQI
Sbjct:   44 YDAGPPEQVVEAGSFVHPCEGEAVCKLTN-EKIPYFNAPIFLENKTQI 90          
BLAST of Ggra6784.t1 vs. uniprot
Match: A0A1R1PZE8 (H/ACA ribonucleoprotein complex subunit n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PZE8_ZANCU)

HSP 1 Score: 68.6 bits (166), Expect = 1.510e-10
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0
Query:   74 YDEGPPEHLIETGSFLHPCQGEMVYKMTTASQVPKFNAAVYLENKTQI 121
            Y++GPP+ ++E G+F+H C+GEMV  +TT  +VP FNA VYL+NKTQI
Sbjct:   56 YNQGPPDSVLELGTFMHDCEGEMVCSLTTNQKVPYFNAPVYLQNKTQI 103          
The following BLAST results are available for this feature:
BLAST of Ggra6784.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3USE84.750e-1466.67H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A7S3UFR11.800e-1160.42H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A6H5KV551.930e-1158.33H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec... [more]
A0A7S3W2194.100e-1156.25H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A7S3BT145.330e-1157.14H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A177WEL25.490e-1159.57H/ACA ribonucleoprotein complex subunit n=1 Tax=Ba... [more]
A0A1R1XIL38.460e-1154.90H/ACA ribonucleoprotein complex subunit n=1 Tax=Sm... [more]
A0A7J7QEC71.020e-1061.70H/ACA ribonucleoprotein complex subunit n=1 Tax=Sc... [more]
A0A835Y7M21.210e-1060.42H/ACA ribonucleoprotein complex subunit n=1 Tax=Ed... [more]
A0A1R1PZE81.510e-1058.33H/ACA ribonucleoprotein complex subunit n=1 Tax=Za... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038664H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainGENE3D2.40.10.230Probable tRNA pseudouridine synthase domaincoord: 78..126
e-value: 1.7E-12
score: 49.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..58
NoneNo IPR availablePANTHERPTHR23237:SF6H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 1coord: 28..134
NoneNo IPR availablePANTHERPTHR23237NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1coord: 28..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:501691..502417 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6784.t1Ggra6784.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 501691..502417 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6784.t1 ID=Ggra6784.t1|Name=Ggra6784.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=193bp
MSGWGRGGYGGRGGGGFGGGRGGGGFRGGGGRGRGGGGFRGGGGRGGGRG
GFRGGGGFRGGGGFRGGGRFNNRYDEGPPEHLIETGSFLHPCQGEMVYKM
TTASQVPKFNAAVYLENKTQILRRREGGLVKVDEEDVGVEEGEAEVDVVD
VDREEWALAVAGVVGEVQVIVVGEVVGHDLRGGSTTKQWVRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038664Gar1/Naf1_Cbf5-bd_sf