Ggra6784.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6784.t1
Unique NameGgra6784.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length193
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:501691..502417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006677716.1
Preferred nameGAR1
PFAMsGar1
Max annot lvl4751|Fungi
KEGG koko:K11128
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
GOsGO:0000154,GO:0000454,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016073,GO:0016074,GO:0022613,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034513,GO:0034641,GO:0034660,GO:0040031,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0072588,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue1.39e-11
EggNOG OGsCOG3277@1|root,KOG3262@2759|Eukaryota,38HDD@33154|Opisthokonta,3P248@4751|Fungi
DescriptionRequired for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03009,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6784Ggra6784Gracilaria gracilis GNS1m malegenetig00000056_pilon 501691..502417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6784.t1Ggra6784.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 501691..502417 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6784.t1.start1Ggra6784.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 501691..501693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6784.t1.CDS1Ggra6784.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 501691..502050 +
Ggra6784.t1.CDS2Ggra6784.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 502199..502417 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6784.t1.exon1Ggra6784.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 501691..502050 +
Ggra6784.t1.exon2Ggra6784.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 502199..502417 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6784.t1.intron1Ggra6784.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 502051..502198 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6784.t1.stop1Ggra6784.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 502415..502417 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6784.t1 ID=Ggra6784.t1|Name=Ggra6784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=193bp
MSGWGRGGYGGRGGGGFGGGRGGGGFRGGGGRGRGGGGFRGGGGRGGGRG
GFRGGGGFRGGGGFRGGGRFNNRYDEGPPEHLIETGSFLHPCQGEMVYKM
TTASQVPKFNAAVYLENKTQILRRREGGLVKVDEEDVGVEEGEAEVDVVD
VDREEWALAVAGVVGEVQVIVVGEVVGHDLRGGSTTKQWVRR*
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spliced messenger RNA

>Ggra6784.t1 ID=Ggra6784.t1|Name=Ggra6784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000056_pilon:501691..502417+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGTTGGGGTCGAGGAGGCTACGGCGGTCGTGGCGGTGGTGGATT
TGGGGGAGGTCGCGGTGGAGGTGGCTTCCGCGGGGGTGGCGGTCGAGGTC
GCGGGGGAGGTGGCTTCCGCGGGGGTGGCGGTCGAGGTGGCGGACGAGGT
GGCTTTCGTGGAGGAGGCGGTTTCCGTGGAGGAGGTGGTTTCCGTGGAGG
TGGACGCTTTAATAACAGATACGATGAAGGGCCTCCCGAACACCTGATTG
AAACGGGCTCTTTCCTTCACCCATGTCAGGGTGAAATGGTGTACAAGATG
ACTACTGCTTCGCAGGTTCCTAAGTTCAATGCGGCCGTCTATTTGGAGAA
CAAAACGCAGATCCTCCGCCGCAGAGAGGGGGGGTTAGTAAAGGTGGACG
AGGAGGACGTGGGGGTAGAGGAAGGGGAGGCAGAGGTGGACGTGGTGGAC
GTGGATCGAGAGGAATGGGCCCTGGCCGTGGCAGGGGTCGTGGGAGAAGT
CCAGGTTATAGTCGTGGGAGAGGTGGTTGGCCACGATCTCAGGGGTGGTA
GCACCACGAAACAATGGGTCCGTCGGTAA
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protein sequence of Ggra6784.t1

>Ggra6784.t1 ID=Ggra6784.t1|Name=Ggra6784.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=193bp
MSGWGRGGYGGRGGGGFGGGRGGGGFRGGGGRGRGGGGFRGGGGRGGGRG
GFRGGGGFRGGGGFRGGGRFNNRYDEGPPEHLIETGSFLHPCQGEMVYKM
TTASQVPKFNAAVYLENKTQILRRREGGLVKVDEEDVGVEEGEAEVDVVD
VDREEWALAVAGVVGEVQVIVVGEVVGHDLRGGSTTKQWVRR*
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mRNA from alignment at tig00000056_pilon:501691..502417+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6784.t1 ID=Ggra6784.t1|Name=Ggra6784.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=727bp|location=Sequence derived from alignment at tig00000056_pilon:501691..502417+ (Gracilaria gracilis GNS1m male)
ATGAGCGGTTGGGGTCGAGGAGGCTACGGCGGTCGTGGCGGTGGTGGATT
TGGGGGAGGTCGCGGTGGAGGTGGCTTCCGCGGGGGTGGCGGTCGAGGTC
GCGGGGGAGGTGGCTTCCGCGGGGGTGGCGGTCGAGGTGGCGGACGAGGT
GGCTTTCGTGGAGGAGGCGGTTTCCGTGGAGGAGGTGGTTTCCGTGGAGG
TGGACGCTTTAATAACAGATACGATGAAGGGCCTCCCGAACACCTGATTG
AAACGGGCTCTTTCCTTCACCCATGTCAGGGTGAAATGGTGTACAAGATG
ACTACTGCTTCGCAGGTTCCTAAGTTCAATGCGGCCGTCTATTTGGAGAA
CAAAACGCAGGTAGGCAAAGTGGAAGAAGTGCTTGGACCAATCAACGAAG
TTCACTTTTCTGTTAAACCTACTGATGGCGTTGTTGCAACAAGCTTTAAA
CCAGGCGATAAGATTTTCATGGGTCCGGACAAATTAATGCCGCTTTCACG
CTTTACAGATCCTCCGCCGCAGAGAGGGGGGGTTAGTAAAGGTGGACGAG
GAGGACGTGGGGGTAGAGGAAGGGGAGGCAGAGGTGGACGTGGTGGACGT
GGATCGAGAGGAATGGGCCCTGGCCGTGGCAGGGGTCGTGGGAGAAGTCC
AGGTTATAGTCGTGGGAGAGGTGGTTGGCCACGATCTCAGGGGTGGTAGC
ACCACGAAACAATGGGTCCGTCGGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:501691..502417+

>Ggra6784.t1 ID=Ggra6784.t1|Name=Ggra6784.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=579bp|location=Sequence derived from alignment at tig00000056_pilon:501691..502417+ (Gracilaria gracilis GNS1m male)
ATGAGCGGTTGGGGTCGAGGAGGCTACGGCGGTCGTGGCGGTGGTGGATT
TGGGGGAGGTCGCGGTGGAGGTGGCTTCCGCGGGGGTGGCGGTCGAGGTC
GCGGGGGAGGTGGCTTCCGCGGGGGTGGCGGTCGAGGTGGCGGACGAGGT
GGCTTTCGTGGAGGAGGCGGTTTCCGTGGAGGAGGTGGTTTCCGTGGAGG
TGGACGCTTTAATAACAGATACGATGAAGGGCCTCCCGAACACCTGATTG
AAACGGGCTCTTTCCTTCACCCATGTCAGGGTGAAATGGTGTACAAGATG
ACTACTGCTTCGCAGGTTCCTAAGTTCAATGCGGCCGTCTATTTGGAGAA
CAAAACGCAGATCCTCCGCCGCAGAGAGGGGGGGTTAGTAAAGGTGGACG
AGGAGGACGTGGGGGTAGAGGAAGGGGAGGCAGAGGTGGACGTGGTGGAC
GTGGATCGAGAGGAATGGGCCCTGGCCGTGGCAGGGGTCGTGGGAGAAGT
CCAGGTTATAGTCGTGGGAGAGGTGGTTGGCCACGATCTCAGGGGTGGTA
GCACCACGAAACAATGGGTCCGTCGGTAA
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