Ggra6777.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6777.t1
Unique NameGgra6777.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length111
Homology
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A2V3IPR5 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR5_9FLOR)

HSP 1 Score: 190 bits (482), Expect = 8.900e-61
Identity = 87/110 (79.09%), Postives = 98/110 (89.09%), Query Frame = 0
Query:    1 MLRRSFVPLKRLATRSLSTPTRRPHMHLPLGAVPDDTDLQGVRSKWGSDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNHH 110
            MLRR+ +P++ LA R+LSTP RRP  HLPLG VPDDTDL  VRSKWGSDAM+KIQ+T +IEVDGDVA+CNGGGGALGHPIEYIKLHVSDEDA PQVCKYCGLKF RK+H+
Sbjct:    1 MLRRAIMPVQVLARRALSTPARRPRKHLPLGVVPDDTDLGSVRSKWGSDAMDKIQNTDVIEVDGDVAICNGGGGALGHPIEYIKLHVSDEDAAPQVCKYCGLKFVRKHHY 110          
BLAST of Ggra6777.t1 vs. uniprot
Match: R7QQI5 (NADH-ubiquinone oxidoreductase subunit iron-sulfur protein 6 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQI5_CHOCR)

HSP 1 Score: 163 bits (412), Expect = 4.460e-50
Identity = 81/111 (72.97%), Postives = 89/111 (80.18%), Query Frame = 0
Query:    1 MLRRSFVPLKRLATRSLST--PTRRPHMHLPLGAVPDDTDLQGVRSKWGSDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNH 109
            MLRR+ VP + +  R+LS    TRRP MH PLG+VP  TD + VRSKWGSDAM+KIQ T   EVDGDVA CNGGGGALGHPIEYIKL VSDEDAGPQVCKYCGLKF RK+H
Sbjct:    1 MLRRALVPARGVLRRALSDGPTTRRPRMHQPLGSVPAGTDPELVRSKWGSDAMDKIQETAATEVDGDVAACNGGGGALGHPIEYIKLLVSDEDAGPQVCKYCGLKFLRKHH 111          
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A7S0T4V0 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T4V0_9RHOD)

HSP 1 Score: 111 bits (277), Expect = 3.650e-29
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0
Query:   22 RRPHMHLPLGAVPDDTDLQGVRSKWGSDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNH 109
            ++  MHLPLG+VPD TDL  VR KWGS+AM+ IQ    IEV+G+VAVC+GGGGA GHPIEYIKL    +   P VCKYCGL++  K +
Sbjct:   54 KQSFMHLPLGSVPDGTDLSVVRHKWGSNAMDLIQQVPPIEVEGNVAVCDGGGGAEGHPIEYIKL----DSPYPAVCKYCGLRYVSKKY 137          
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A5J4Z2H0 (NADH dehydrogenase ubiquinone iron-sulfur protein 6, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2H0_PORPP)

HSP 1 Score: 101 bits (251), Expect = 2.690e-25
Identity = 53/98 (54.08%), Postives = 66/98 (67.35%), Query Frame = 0
Query:   14 TRSLSTPTRRPHMHLPLGAVPDDTDLQGVRSKWGSDAMEKIQSTHIIEVDGDVAVCNGGGG-ALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNHH 110
            TR  S+       HLPLG VP+ TD   V+SKWGS+AM+ IQ    I VDG+V VC+GGG  ++GHPIE+IKL +      P VCKYCGL++ARKN H
Sbjct:   42 TRFGSSDAPSRFAHLPLGQVPEGTDPSQVKSKWGSNAMDMIQQVAPILVDGNVVVCDGGGDPSVGHPIEFIKLDMPY----PAVCKYCGLRYARKNAH 135          
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A1W0A7P4 (zf-CHCC domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7P4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.590e-19
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 0
Query:   48 SDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNHH 110
            SDA  +I    +IEVDGD AVC+GGGGALGHP+EYI L +  ++  PQVCKYCGL+F + +HH
Sbjct:   51 SDAEIRIAQVPVIEVDGDTAVCDGGGGALGHPLEYIALDIVSKE--PQVCKYCGLRFKKSHHH 111          
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A485KN93 (Aste57867_9463 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KN93_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.920e-19
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 0
Query:   48 SDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLH-VSDEDAGPQVCKYCGLKFARKNHH 110
            SDA  +I    +IEVD D AVC+GGGGALGHP+EYI L+ VSDE   PQ CKYCGL+F  K+HH
Sbjct:   58 SDAEIRIAQVPVIEVDSDTAVCDGGGGALGHPLEYIALNIVSDE---PQTCKYCGLRFKMKHHH 118          
BLAST of Ggra6777.t1 vs. uniprot
Match: W4FPE3 (zf-CHCC domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPE3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.060e-18
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0
Query:   48 SDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNHH 110
            SDA  +I    ++EVD DVAVC+GGGGALGHP+EYI L++  +   PQ CKYCGL++ +K+HH
Sbjct:   56 SDAELRIAQVPVVEVDSDVAVCDGGGGALGHPVEYIALNIVSDK--PQTCKYCGLRYKQKHHH 116          
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A067CR14 (zf-CHCC domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CR14_SAPPC)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-18
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0
Query:   48 SDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNHH 110
            SDA  +I    +IEVDGD AVC+GGGGALGHP+EYI L +   +  PQ CKYCGL+F + +HH
Sbjct:   54 SDAEIRIAQVPVIEVDGDTAVCDGGGGALGHPLEYIALDIVSHE--PQACKYCGLRFKKHHHH 114          
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A6G0WCA7 (zf-CHCC domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCA7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.650e-18
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0
Query:   48 SDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNHH 110
            SDA  +I    ++EVD DVAVC+GGGGALGHP+EYI+L+   ++  PQ CKYCGL++  K+HH
Sbjct:   51 SDAELRIAKVPVVEVDTDVAVCDGGGGALGHPLEYIQLNTVSKE--PQTCKYCGLRYKMKHHH 111          
BLAST of Ggra6777.t1 vs. uniprot
Match: A0A7S0AI12 (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AI12_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.540e-17
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 0
Query:   33 VPDDTDLQGVRSKWGSDAMEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYCGLKFARKNHH 110
            V   TD    + K  S+A+E I+   +IEV+GD+AVC+GGGGALGHP+EYIK+        P  C YCGLKF +K  H
Sbjct:   51 VISQTDAPYAKGKHRSNALELIEQQAVIEVEGDMAVCDGGGGALGHPLEYIKI--GSNGGKPVACIYCGLKFKQKGAH 126          
The following BLAST results are available for this feature:
BLAST of Ggra6777.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPR58.900e-6179.09NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7QQI54.460e-5072.97NADH-ubiquinone oxidoreductase subunit iron-sulfur... [more]
A0A7S0T4V03.650e-2960.23Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A5J4Z2H02.690e-2554.08NADH dehydrogenase ubiquinone iron-sulfur protein ... [more]
A0A1W0A7P41.590e-1960.32zf-CHCC domain-containing protein n=1 Tax=Thrausto... [more]
A0A485KN937.920e-1964.06Aste57867_9463 protein n=1 Tax=Aphanomyces stellat... [more]
W4FPE31.060e-1857.14zf-CHCC domain-containing protein n=4 Tax=Aphanomy... [more]
A0A067CR141.390e-1858.73zf-CHCC domain-containing protein n=3 Tax=Saproleg... [more]
A0A6G0WCA73.650e-1857.14zf-CHCC domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S0AI121.540e-1750.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.260.40q5lls5 like domainscoord: 58..110
e-value: 1.9E-16
score: 61.4
NoneNo IPR availablePANTHERPTHR13156NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNITcoord: 49..110
IPR019401Zinc finger, CHCC-typePFAMPF10276zf-CHCCcoord: 65..104
e-value: 1.3E-13
score: 50.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:490047..490379 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6777.t1Ggra6777.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 490047..490379 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6777.t1 ID=Ggra6777.t1|Name=Ggra6777.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=111bp
MLRRSFVPLKRLATRSLSTPTRRPHMHLPLGAVPDDTDLQGVRSKWGSDA
MEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYC
GLKFARKNHH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019401Znf_CHCC