Ggra6777.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6777.t1
Unique NameGgra6777.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length111
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:490047..490379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008609687.1
Preferred nameNDUFS6
PFAMszf-CHCC
Max annot lvl2759|Eukaryota
KEGG koko:K03939
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
GOsGO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006082,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006936,GO:0006996,GO:0007005,GO:0007275,GO:0007568,GO:0008137,GO:0008150,GO:0008152,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009653,GO:0009987,GO:0010257,GO:0010259,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032787,GO:0032981,GO:0032989,GO:0032990,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0035264,GO:0040007,GO:0042221,GO:0042493,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0061458,GO:0065003,GO:0070469,GO:0070584,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue6.01e-20
EggNOG OGsKOG3456@1|root,KOG3456@2759|Eukaryota
Descriptionmitochondrial electron transport, NADH to ubiquinone
COG categoryS
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6777Ggra6777Gracilaria gracilis GNS1m malegenetig00000056_pilon 490047..490379 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6777.t1.start1Ggra6777.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 490047..490049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6777.t1.CDS1Ggra6777.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 490047..490379 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6777.t1.exon1Ggra6777.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 490047..490379 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6777.t1.stop1Ggra6777.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 490377..490379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6777.t1Ggra6777.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 490047..490379 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6777.t1 ID=Ggra6777.t1|Name=Ggra6777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=111bp
MLRRSFVPLKRLATRSLSTPTRRPHMHLPLGAVPDDTDLQGVRSKWGSDA
MEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYC
GLKFARKNHH*
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spliced messenger RNA

>Ggra6777.t1 ID=Ggra6777.t1|Name=Ggra6777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00000056_pilon:490047..490379+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGTCGCTCCTTCGTCCCTCTGAAGCGGCTTGCCACGCGCTCGTT
GTCGACGCCGACGCGCCGTCCGCACATGCATCTTCCACTCGGCGCCGTGC
CCGACGATACTGACTTGCAGGGCGTTCGATCCAAATGGGGCTCTGACGCC
ATGGAGAAGATCCAGAGTACGCATATCATTGAGGTTGATGGCGATGTTGC
CGTCTGTAACGGCGGCGGTGGCGCCCTCGGGCATCCGATCGAGTATATCA
AGCTCCACGTCTCCGATGAAGATGCCGGCCCCCAGGTGTGCAAGTACTGC
GGACTCAAGTTCGCGCGCAAGAACCACCATTAA
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protein sequence of Ggra6777.t1

>Ggra6777.t1 ID=Ggra6777.t1|Name=Ggra6777.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=111bp
MLRRSFVPLKRLATRSLSTPTRRPHMHLPLGAVPDDTDLQGVRSKWGSDA
MEKIQSTHIIEVDGDVAVCNGGGGALGHPIEYIKLHVSDEDAGPQVCKYC
GLKFARKNHH*
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mRNA from alignment at tig00000056_pilon:490047..490379+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6777.t1 ID=Ggra6777.t1|Name=Ggra6777.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=333bp|location=Sequence derived from alignment at tig00000056_pilon:490047..490379+ (Gracilaria gracilis GNS1m male)
ATGCTTCGTCGCTCCTTCGTCCCTCTGAAGCGGCTTGCCACGCGCTCGTT
GTCGACGCCGACGCGCCGTCCGCACATGCATCTTCCACTCGGCGCCGTGC
CCGACGATACTGACTTGCAGGGCGTTCGATCCAAATGGGGCTCTGACGCC
ATGGAGAAGATCCAGAGTACGCATATCATTGAGGTTGATGGCGATGTTGC
CGTCTGTAACGGCGGCGGTGGCGCCCTCGGGCATCCGATCGAGTATATCA
AGCTCCACGTCTCCGATGAAGATGCCGGCCCCCAGGTGTGCAAGTACTGC
GGACTCAAGTTCGCGCGCAAGAACCACCATTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:490047..490379+

>Ggra6777.t1 ID=Ggra6777.t1|Name=Ggra6777.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=333bp|location=Sequence derived from alignment at tig00000056_pilon:490047..490379+ (Gracilaria gracilis GNS1m male)
ATGCTTCGTCGCTCCTTCGTCCCTCTGAAGCGGCTTGCCACGCGCTCGTT
GTCGACGCCGACGCGCCGTCCGCACATGCATCTTCCACTCGGCGCCGTGC
CCGACGATACTGACTTGCAGGGCGTTCGATCCAAATGGGGCTCTGACGCC
ATGGAGAAGATCCAGAGTACGCATATCATTGAGGTTGATGGCGATGTTGC
CGTCTGTAACGGCGGCGGTGGCGCCCTCGGGCATCCGATCGAGTATATCA
AGCTCCACGTCTCCGATGAAGATGCCGGCCCCCAGGTGTGCAAGTACTGC
GGACTCAAGTTCGCGCGCAAGAACCACCATTAA
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