Ggra6743.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6743.t1
Unique NameGgra6743.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Homology
BLAST of Ggra6743.t1 vs. uniprot
Match: A0A2V3IGM5 (Transmembrane emp24 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGM5_9FLOR)

HSP 1 Score: 306 bits (784), Expect = 6.100e-103
Identity = 147/201 (73.13%), Postives = 175/201 (87.06%), Query Frame = 0
Query:   31 SHASSLTFELPYGQRKCYVEQLPPLTTCRGTVHVASGKGEMSLDLFVSDQRGTVYFHKQDVNSVKFSFKTGNFQTHTVQDFRFCVVNQVHPHSRSTPGVLRRVTLDVEAVNEDGQKSLPNFLKQEHAEKVYNDFVGVTQSLDSVIEKLDQLREQEASLTAINESTTVTIFRLSLVACVFTIATGFLNFISLKSFFKRKKIA 231
            S ASSLTFELPYGQRKC+ EQLPP + CRGT+HVASGKGEMSLDLFVSD RGTV FHKQDVN+VKFSFKTG FQTHTVQD+RFCV+NQVHPHS STPG +RRVTLDV+ V +   +S     KQEHA+K+YNDF+ V+QS+DS+IEK+D+LRE+EA+LT IN+ TT TIFRLS++AC+FT+A G  NF+SLK+FFKRKK+A
Sbjct:   30 SEASSLTFELPYGQRKCFTEQLPPRSICRGTIHVASGKGEMSLDLFVSDMRGTVQFHKQDVNTVKFSFKTGLFQTHTVQDYRFCVINQVHPHSHSTPGAVRRVTLDVDIVKDKDDESTSRLAKQEHADKIYNDFMMVSQSVDSIIEKMDELREKEANLTNINKQTTTTIFRLSMLACLFTVAAGVANFLSLKTFFKRKKLA 230          
BLAST of Ggra6743.t1 vs. uniprot
Match: R7QUU8 (GOLD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUU8_CHOCR)

HSP 1 Score: 219 bits (558), Expect = 7.590e-67
Identity = 113/200 (56.50%), Postives = 143/200 (71.50%), Query Frame = 0
Query:   33 ASSLTFELPYGQRKCYVEQLPPLTTCRGTVHVASGKGEMSLDLFVSDQRGTVYFHKQDVNSVKFSFKTGNFQTHTVQDFRFCVVNQVHPHS-RSTPGVLRRVTLDVEAVNEDGQKSLPNFLKQEHAEKVYNDFVGVTQSLDSVIEKLDQLREQEASLTAINESTTVTIFRLSLVACVFTIATGFLNFISLKSFFKRKKIA 231
            A+SLTFEL +GQRKC+ E LPP T   GTVHV+SG G+M+LDLFV+D RG VYFH+ +V++VKFSF TG    HT + +RFCVVNQV  H+ R    V RRVTL+V+ +            KQ+H +KVY  FV V   ++ +IEK+D+LRE+E  L   NE T+ TIFR+S VAC+FTI TG LNF+SLKSFFKRKK+A
Sbjct:  167 ANSLTFELGFGQRKCFSEDLPPDTRTLGTVHVSSGHGDMTLDLFVADGRGKVYFHRANVDTVKFSFVTGAGSAHTRESYRFCVVNQVTAHAVRPAANVARRVTLEVDTLRPSTDSPAARIAKQDHVDKVYASFVAVQNDIEDLIEKIDELREREEHLNRANEDTSSTIFRISFVACLFTIITGLLNFLSLKSFFKRKKLA 366          
BLAST of Ggra6743.t1 vs. uniprot
Match: uncharacterized protein LOC123544141 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D95D0 (uncharacterized protein LOC123544141 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D95D0)

HSP 1 Score: 157 bits (397), Expect = 3.280e-45
Identity = 78/161 (48.45%), Postives = 113/161 (70.19%), Query Frame = 0
Query:   71 MSLDLFVSDQRGTVYFHKQDVNSVKFSFKTGNFQTHTVQDFRFCVVNQVHPHSRSTPGVLRRVTLDVEAVNEDGQKSLPNFLKQEHAEKVYNDFVGVTQSLDSVIEKLDQLREQEASLTAINESTTVTIFRLSLVACVFTIATGFLNFISLKSFFKRKKIA 231
            M+LDLFVSD  G VYFHK D N+VK+SFK+G+F  HT   +RFCVV+Q HPH+     V RRV+L V       ++ + +  K  H  K+   F  V+  +D++I +LD++R +E +LT INE+T+ TI R++++A +FT+ATG LNF++LKSFFK+KK+A
Sbjct:    1 MTLDLFVSDHHGVVYFHKADANAVKYSFKSGSFDAHTTMPYRFCVVHQAHPHAAPGLHVARRVSLSVRVDTPAFKEVVDSLAKGGHLSKIQESFQEVSNEVDALIARLDEIRLKEQTLTNINENTSRTILRITVIAALFTVATGVLNFLNLKSFFKQKKLA 161          
The following BLAST results are available for this feature:
BLAST of Ggra6743.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IGM56.100e-10373.13Transmembrane emp24 domain-containing protein n=1 ... [more]
R7QUU87.590e-6756.50GOLD domain-containing protein n=1 Tax=Chondrus cr... [more]
uncharacterized protein LOC123544141 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D95D03.280e-4548.45uncharacterized protein LOC123544141 n=1 Tax=Merce... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 220..231
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 199..219
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..198
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 199..221
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 35..226
e-value: 1.0E-18
score: 78.1
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 35..226
e-value: 1.7E-24
score: 86.8
IPR015720Transmembrane emp24 domain-containing proteinPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 22..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:332636..333331 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6743.t1Ggra6743.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 332636..333331 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6743.t1 ID=Ggra6743.t1|Name=Ggra6743.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MGEQRGSVSHHHTPPAVFIVAVSFLFTFGFSHASSLTFELPYGQRKCYVE
QLPPLTTCRGTVHVASGKGEMSLDLFVSDQRGTVYFHKQDVNSVKFSFKT
GNFQTHTVQDFRFCVVNQVHPHSRSTPGVLRRVTLDVEAVNEDGQKSLPN
FLKQEHAEKVYNDFVGVTQSLDSVIEKLDQLREQEASLTAINESTTVTIF
RLSLVACVFTIATGFLNFISLKSFFKRKKIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR015720Emp24-like