Ggra6743.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6743.t1
Unique NameGgra6743.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:332636..333331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC072CT
Preferred nameTMED10
PFAMsEMP24_GP25L
Max annot lvl2759|Eukaryota
KEGG koko:K20347,ko:K20352,ko:K20878
KEGG TC1.I.1.1.3,9.B.188,9.B.188.1.2
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001822,GO:0002790,GO:0003002,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007154,GO:0007267,GO:0007275,GO:0007389,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009953,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030137,GO:0030140,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030667,GO:0031090,GO:0031224,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034248,GO:0034613,GO:0034622,GO:0035459,GO:0035964,GO:0042175,GO:0042221,GO:0042588,GO:0042589,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044877,GO:0045055,GO:0045184,GO:0046662,GO:0046903,GO:0046907,GO:0048042,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048207,GO:0048208,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051259,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0070765,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0080090,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0099503,GO:0198738,GO:1901698,GO:1902003,GO:1902991,GO:2000241
Evalue4.29e-10
EggNOG OGsKOG1691@1|root,KOG1691@2759|Eukaryota
EC2.7.11.1
Descriptionprotein transport
COG categoryT
BRITEko00000,ko01000,ko01001,ko02000,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6743Ggra6743Gracilaria gracilis GNS1m malegenetig00000056_pilon 332636..333331 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6743.t1.stop1Ggra6743.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 332636..332638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6743.t1.CDS1Ggra6743.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 332636..333331 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6743.t1.exon1Ggra6743.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 332636..333331 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6743.t1.start1Ggra6743.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 333329..333331 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6743.t1Ggra6743.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 332636..333331 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6743.t1 ID=Ggra6743.t1|Name=Ggra6743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=232bp
MGEQRGSVSHHHTPPAVFIVAVSFLFTFGFSHASSLTFELPYGQRKCYVE
QLPPLTTCRGTVHVASGKGEMSLDLFVSDQRGTVYFHKQDVNSVKFSFKT
GNFQTHTVQDFRFCVVNQVHPHSRSTPGVLRRVTLDVEAVNEDGQKSLPN
FLKQEHAEKVYNDFVGVTQSLDSVIEKLDQLREQEASLTAINESTTVTIF
RLSLVACVFTIATGFLNFISLKSFFKRKKIA*
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spliced messenger RNA

>Ggra6743.t1 ID=Ggra6743.t1|Name=Ggra6743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000056_pilon:332636..333331- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAACAAAGGGGAAGTGTTTCACATCACCACACGCCTCCTGCGGT
TTTTATCGTAGCAGTTTCATTTCTCTTCACCTTCGGTTTTTCACACGCTT
CGTCGCTTACCTTCGAACTACCATACGGTCAAAGAAAATGTTATGTGGAA
CAGCTACCACCATTGACCACATGTCGCGGCACAGTACATGTGGCCAGTGG
AAAAGGGGAGATGAGTTTGGATCTGTTTGTCAGTGACCAGAGAGGAACCG
TTTACTTCCACAAGCAGGACGTAAATTCCGTCAAGTTCTCTTTCAAAACC
GGAAACTTTCAAACACATACCGTACAAGACTTTCGTTTCTGTGTTGTCAA
TCAAGTACATCCGCATTCGCGGTCTACTCCGGGGGTGCTTCGACGTGTCA
CCTTGGATGTTGAAGCTGTCAACGAAGACGGACAGAAGAGTCTTCCTAAC
TTCCTCAAACAAGAACACGCTGAGAAGGTGTATAACGATTTCGTCGGGGT
TACGCAGTCTCTCGACAGCGTTATTGAAAAGCTGGATCAACTTCGAGAAC
AAGAGGCCAGTCTTACTGCCATAAACGAGAGCACCACAGTCACAATATTC
AGACTAAGTCTCGTCGCATGTGTGTTTACTATTGCTACAGGGTTCCTTAA
CTTCATCTCGTTGAAGTCATTCTTCAAACGGAAAAAGATCGCATGA
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protein sequence of Ggra6743.t1

>Ggra6743.t1 ID=Ggra6743.t1|Name=Ggra6743.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MGEQRGSVSHHHTPPAVFIVAVSFLFTFGFSHASSLTFELPYGQRKCYVE
QLPPLTTCRGTVHVASGKGEMSLDLFVSDQRGTVYFHKQDVNSVKFSFKT
GNFQTHTVQDFRFCVVNQVHPHSRSTPGVLRRVTLDVEAVNEDGQKSLPN
FLKQEHAEKVYNDFVGVTQSLDSVIEKLDQLREQEASLTAINESTTVTIF
RLSLVACVFTIATGFLNFISLKSFFKRKKIA*
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mRNA from alignment at tig00000056_pilon:332636..333331-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6743.t1 ID=Ggra6743.t1|Name=Ggra6743.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=696bp|location=Sequence derived from alignment at tig00000056_pilon:332636..333331- (Gracilaria gracilis GNS1m male)
ATGGGAGAACAAAGGGGAAGTGTTTCACATCACCACACGCCTCCTGCGGT
TTTTATCGTAGCAGTTTCATTTCTCTTCACCTTCGGTTTTTCACACGCTT
CGTCGCTTACCTTCGAACTACCATACGGTCAAAGAAAATGTTATGTGGAA
CAGCTACCACCATTGACCACATGTCGCGGCACAGTACATGTGGCCAGTGG
AAAAGGGGAGATGAGTTTGGATCTGTTTGTCAGTGACCAGAGAGGAACCG
TTTACTTCCACAAGCAGGACGTAAATTCCGTCAAGTTCTCTTTCAAAACC
GGAAACTTTCAAACACATACCGTACAAGACTTTCGTTTCTGTGTTGTCAA
TCAAGTACATCCGCATTCGCGGTCTACTCCGGGGGTGCTTCGACGTGTCA
CCTTGGATGTTGAAGCTGTCAACGAAGACGGACAGAAGAGTCTTCCTAAC
TTCCTCAAACAAGAACACGCTGAGAAGGTGTATAACGATTTCGTCGGGGT
TACGCAGTCTCTCGACAGCGTTATTGAAAAGCTGGATCAACTTCGAGAAC
AAGAGGCCAGTCTTACTGCCATAAACGAGAGCACCACAGTCACAATATTC
AGACTAAGTCTCGTCGCATGTGTGTTTACTATTGCTACAGGGTTCCTTAA
CTTCATCTCGTTGAAGTCATTCTTCAAACGGAAAAAGATCGCATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:332636..333331-

>Ggra6743.t1 ID=Ggra6743.t1|Name=Ggra6743.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=696bp|location=Sequence derived from alignment at tig00000056_pilon:332636..333331- (Gracilaria gracilis GNS1m male)
ATGGGAGAACAAAGGGGAAGTGTTTCACATCACCACACGCCTCCTGCGGT
TTTTATCGTAGCAGTTTCATTTCTCTTCACCTTCGGTTTTTCACACGCTT
CGTCGCTTACCTTCGAACTACCATACGGTCAAAGAAAATGTTATGTGGAA
CAGCTACCACCATTGACCACATGTCGCGGCACAGTACATGTGGCCAGTGG
AAAAGGGGAGATGAGTTTGGATCTGTTTGTCAGTGACCAGAGAGGAACCG
TTTACTTCCACAAGCAGGACGTAAATTCCGTCAAGTTCTCTTTCAAAACC
GGAAACTTTCAAACACATACCGTACAAGACTTTCGTTTCTGTGTTGTCAA
TCAAGTACATCCGCATTCGCGGTCTACTCCGGGGGTGCTTCGACGTGTCA
CCTTGGATGTTGAAGCTGTCAACGAAGACGGACAGAAGAGTCTTCCTAAC
TTCCTCAAACAAGAACACGCTGAGAAGGTGTATAACGATTTCGTCGGGGT
TACGCAGTCTCTCGACAGCGTTATTGAAAAGCTGGATCAACTTCGAGAAC
AAGAGGCCAGTCTTACTGCCATAAACGAGAGCACCACAGTCACAATATTC
AGACTAAGTCTCGTCGCATGTGTGTTTACTATTGCTACAGGGTTCCTTAA
CTTCATCTCGTTGAAGTCATTCTTCAAACGGAAAAAGATCGCATGA
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