Ggra6740.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6740.t1
Unique NameGgra6740.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length312
Homology
BLAST of Ggra6740.t1 vs. uniprot
Match: A0A2V3IGM3 (Sonic hedgehog protein A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGM3_9FLOR)

HSP 1 Score: 270 bits (690), Expect = 5.260e-86
Identity = 186/331 (56.19%), Postives = 221/331 (66.77%), Query Frame = 0
Query:    1 MIKPFPFSSVVCVLLFISVCTASIAPCDENDPKSLCLTPLKHRNWYGTSATLRKSRGGGG---------------------SXXXXXXXXXXXSNSRRRPFRRPGRRPGGFGGDDXXXXFVGEXXXXXXXXXXXXXXXXXXXXXXXDLCFPADATVHTLNRGDIAMRQLQVGDEVRVAS-HNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVRWVLPFVPSGVNSM 309
            M+  F ++  + VLLF++ CTAS+APC+E DP SLCL+PLK  N +   A +R+   GG                      S  XXXXXXXXX     RPFRRP RRP G GGD XXXX        XXXXXXXXXXXXXXXXXXX +CFPA A V TL+RG I + QLQ+GD+V VA       YS VFTFSHR+  S+FPFKS+ TE+G L V+AGHYVYTR+ L AAK+LRP DELQLAD SFT V  V NVW KGLYNPHT  GEL+VDGFRVSSYTTSV  +VA ALL P+RA + +  +DITAG  E  +  W+  +VP G N++
Sbjct:    1 MLLSFRYTLSITVLLFVTACTASLAPCNEGDPNSLCLSPLKRVNTHQVDAVVRRGGSGGARGXXXXSRXXXXXXXXXXXXXSRGXXXXXXXXXXXXGSRPFRRPFRRPSGLGGDXXXXXXX------XXXXXXXXXXXXXXXXXXXXVCFPASAVVTTLDRGAIRISQLQLGDKVLVAKVGTNSTYSTVFTFSHRIDHSWFPFKSIETEEGTLVVSAGHYVYTRDTLRAAKTLRPNDELQLADGSFTPVQRVHNVWEKGLYNPHTELGELLVDGFRVSSYTTSVRTNVATALLAPVRAAFALLRVDITAGLFEHSVHSWITRWVPKGANTV 325          
BLAST of Ggra6740.t1 vs. uniprot
Match: A0A2V3IFE3 (Protein hedgehog n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFE3_9FLOR)

HSP 1 Score: 157 bits (397), Expect = 3.950e-43
Identity = 80/182 (43.96%), Postives = 111/182 (60.99%), Query Frame = 0
Query:  128 CFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVRWVLPFVPSGVNSM 309
            CFP +A V   N G + MR L+ GD V  A+     YSEVF FSHR++TS  PF+ + T    +T + GHY+YT+  L+AA +++ GD L      +  V+  ++VW +GLYNPHT  GE VV+GFRVS YTT+V   +A  LL+PLRA ++V G DI+ G L      W+ P    G +S+
Sbjct:   60 CFPGNAAVKVENIGWVPMRNLRTGDRVLQANG---AYSEVFGFSHRLRTSIHPFRRICTVTKCMTASHGHYIYTKQKLVAAGAIKAGDFLATGVDEYEAVIGSEDVWEQGLYNPHTLTGEFVVEGFRVSCYTTAVRPDLAKTLLSPLRAAFRVIGADISGGLLASVRQPWMFPPGMLGQSSL 238          
BLAST of Ggra6740.t1 vs. uniprot
Match: R7Q619 (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q619_CHOCR)

HSP 1 Score: 129 bits (323), Expect = 4.030e-32
Identity = 68/162 (41.98%), Postives = 102/162 (62.96%), Query Frame = 0
Query:  127 LCFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKG-ALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITA 287
            +CFPA+A V   N     M Q+Q+GD VRV  ++   +S+VF F+H+     + F +L T+ G  L++T GHY+Y    + AAK++R GD + LAD + + V  V     +GLYNP T  G+++V+G   ++YTT+VE S+A+ALL PLRAVY   G  ++A
Sbjct:   68 VCFPANALVELENGATKMMSQVQLGDRVRVGPND---FSDVFMFTHKTAAIKYSFVTLATQSGHTLSLTKGHYLYVNGVVAAAKTVRSGDFITLADGTTSSVTQVGTEIARGLYNPQTVHGDIIVNGLLATTYTTTVERSMAHALLAPLRAVYSSIGWSMSA 226          
BLAST of Ggra6740.t1 vs. uniprot
Match: A0A2V3IFE6 (Sonic hedgehog protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFE6_9FLOR)

HSP 1 Score: 128 bits (321), Expect = 2.460e-30
Identity = 69/169 (40.83%), Postives = 99/169 (58.58%), Query Frame = 0
Query:  128 CFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVR 296
            CFPAD TV   +     M Q+ +GD VRV       +SEVF F+HR+Q     F  + T+   +++T GHY++    L AAK+++ GD ++LA      V  V+ V   GLYNP T  G++VV+G R S+YTT+V+ + A+ LLTP RA+Y+ FG+     A ER  V 
Sbjct:  241 CFPADTTVELEDGSVKEMAQVNIGDRVRVG---RSMFSEVFMFTHRLQDGENYFVKIETDSSGISLTKGHYLFVNGVLAAAKTVQVGDLVELASGETATVRAVKKVKGTGLYNPQTISGDIVVNGIRASTYTTTVDPAFAHRLLTPFRALYQAFGV--ATSAFERGAVN 404          
BLAST of Ggra6740.t1 vs. uniprot
Match: A0A1X6PD14 (Hint domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PD14_PORUM)

HSP 1 Score: 129 bits (324), Expect = 4.640e-30
Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 0
Query:  128 CFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVRWVLPFVPSGVNS 308
            CFPA A +   +   + +  L  G  VRV    +  +SEVF FSH+V     PF  L T  GALT++AGHYVY    L AA ++  GD L+ AD +   V  +  V   GLY PHT  G++VVDGFRVS+YTT+VE  +A+ALL P+RA Y+  G  +    LE    R++    P G ++
Sbjct:  385 CFPASAALTLADGTAVGVDILATGHTVRVG---KAAHSEVFLFSHKVAGGDHPFLRLTTAAGALTLSAGHYVYANGGLKAAAAVAVGDTLETADGATVPVSAITAVRASGLYAPHTLHGDVVVDGFRVSTYTTAVEPRLAHALLAPVRAAYRA-GYQLVGDRLEGGS-RFLASIAPKGKDA 560          
BLAST of Ggra6740.t1 vs. uniprot
Match: R7QIA6 (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIA6_CHOCR)

HSP 1 Score: 124 bits (311), Expect = 1.150e-28
Identity = 67/159 (42.14%), Postives = 97/159 (61.01%), Query Frame = 0
Query:  127 LCFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGA-LTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGID 284
            +CFPADA+V   N     M Q+++GD V+VA  +   +S+VF F+H+  ++   F  + T  GA L+ T GHY+Y  NA  AA S + GD L+L D S T V +V  V   GL+NP T  G+++V+  R S++T ++E S A A+L PLR +Y  FGI 
Sbjct:  284 VCFPADASVELENGSFKTMAQVELGDRVKVADGS---FSDVFMFTHKDASAVHDFVRISTRSGASLSATRGHYIYINNAFAAAGSAKVGDTLELGDGSKTLVSNVGIVKGTGLFNPQTVHGDIIVNSVRASTFTRTIEPSAAQAMLAPLRMLYDTFGIS 439          
BLAST of Ggra6740.t1 vs. uniprot
Match: warthog protein 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDBBD (warthog protein 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDBBD)

HSP 1 Score: 120 bits (302), Expect = 1.950e-28
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = 0
Query:  128 CFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKG-ALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGI 283
            CFP  A V   +     M ++++GD V+V       +SEVF F+H+  T  + F  + T  G ++++T GHY++    L AA  +  GD LQL     T+V DV  V  KG+YNP T  G++VV G RVS+YTT+VE  +A+A L  +R++Y++FG+
Sbjct:  132 CFPGSAMVELESGARQRMDKMKIGDRVKVG---RAEFSEVFMFTHKTHTGIYDFVKITTSSGHSVSLTGGHYIHVNGGLAAASVVAVGDMLQLGTGEATEVTDVTCVQSKGIYNPQTLHGDIVVGGIRVSTYTTAVEPRLAHAGLGAIRSMYRIFGL 285          
BLAST of Ggra6740.t1 vs. uniprot
Match: A0A2V3IRZ6 (Indian hedgehog B protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRZ6_9FLOR)

HSP 1 Score: 122 bits (306), Expect = 4.950e-28
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 0
Query:  127 LCFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGA-LTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFG 282
            +CFPA+ATV   +     M Q+Q+GD V+V       +SEVF F+H+V      F  L    GA ++ T+GHYVY    L AA++ + GD ++L + + + V  V  V + GLYNP T  G+++V+  R S++TT++EA  A A+L PLR VY VFG
Sbjct:  271 ICFPAEATVEMEDGSTKRMDQVQIGDRVKVGY---DMFSEVFMFTHKVSKRVSQFVKLDMASGASISATSGHYVYLNGRLAAARTAKVGDVMELGNGARSTVEKVSMVRKSGLYNPQTLHGDIIVNEVRASTFTTAIEAGTAQAMLAPLRMVYDVFG 424          
BLAST of Ggra6740.t1 vs. uniprot
Match: R7Q909 (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q909_CHOCR)

HSP 1 Score: 123 bits (309), Expect = 8.550e-28
Identity = 69/171 (40.35%), Postives = 98/171 (57.31%), Query Frame = 0
Query:  128 CFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKV--LDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVR 296
            CFP+DA V   +   I M QL++GDEV+V +  E  YSEVF FSHR       F  + TE  ++TV+ GH VY    +  A S+R GD +  +  +   V  + VQ +  KGL+NPHTF G++VV+G   +++T++V  SVA  LL P    YK+FG  I    L   ++R
Sbjct:  504 CFPSDAVVELRDGRMIKMDQLKIGDEVKVGATGE--YSEVFFFSHRNGDRINEFIRIETESNSMTVSPGHLVYANGKVATASSVRVGDSVSASQDTVNSVTVVTVQRIKSKGLHNPHTFHGDIVVNGLVATTFTSAVHPSVARLLLIPFHLSYKIFGAHIFQDRLNAEVLR 672          
BLAST of Ggra6740.t1 vs. uniprot
Match: R7QFW8 (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFW8_CHOCR)

HSP 1 Score: 120 bits (302), Expect = 2.030e-27
Identity = 66/154 (42.86%), Postives = 90/154 (58.44%), Query Frame = 0
Query:  128 CFPADATVHTLNRGDIAMRQLQVGDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKG--ALTVTAGHYVYTRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVVDGFRVSSYTTSVEASVANALLTPLRAVYK 279
            CFPA +TV   +   I M  L++G  VRV++H    +S VF FSHR  +S   +  +    G   LTVT+GHY++    L+ A + + GD +  AD  +  V  V+ V   GLYNPHT  G+LVVDGF  S+YTT+V   +A  LL PLRA Y+
Sbjct:  282 CFPATSTVELASGARIPMSDLRIGHSVRVSTH---AFSPVFLFSHRTSSSAPSYIQITPTTGNHTLTVTSGHYLHINRQLLPAAAAKVGDHILTADHGWAPVAAVRIVQANGLYNPHTLQGDLVVDGFVTSTYTTAVPRRIATGLLAPLRAFYR 432          
The following BLAST results are available for this feature:
BLAST of Ggra6740.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IGM35.260e-8656.19Sonic hedgehog protein A n=1 Tax=Gracilariopsis ch... [more]
A0A2V3IFE33.950e-4343.96Protein hedgehog n=1 Tax=Gracilariopsis chorda Tax... [more]
R7Q6194.030e-3241.98HintN domain-containing protein n=1 Tax=Chondrus c... [more]
A0A2V3IFE62.460e-3040.83Sonic hedgehog protein n=1 Tax=Gracilariopsis chor... [more]
A0A1X6PD144.640e-3041.99Hint domain-containing protein n=1 Tax=Porphyra um... [more]
R7QIA61.150e-2842.14HintN domain-containing protein n=1 Tax=Chondrus c... [more]
warthog protein 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDBBD1.950e-2839.49warthog protein 6-like n=1 Tax=Mercenaria mercenar... [more]
A0A2V3IRZ64.950e-2841.40Indian hedgehog B protein n=1 Tax=Gracilariopsis c... [more]
R7Q9098.550e-2840.35HintN domain-containing protein n=1 Tax=Chondrus c... [more]
R7QFW82.030e-2742.86HintN domain-containing protein n=1 Tax=Chondrus c... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003587Hint domain N-terminalSMARTSM00306hint_7coord: 126..221
e-value: 1.5E-7
score: 41.1
IPR001767Hedgehog protein, Hint domainPFAMPF01079Hintcoord: 127..280
e-value: 7.5E-23
score: 81.1
NoneNo IPR availableGENE3D2.170.16.10Hedgehog/Intein (Hint) domaincoord: 128..259
e-value: 2.5E-30
score: 107.8
NoneNo IPR availablePIRSRPIRSR009400-2PIRSR009400-2coord: 127..280
e-value: 1.7E-21
score: 72.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..117
NoneNo IPR availablePANTHERPTHR11889:SF31PROTEIN HEDGEHOGcoord: 125..281
NoneNo IPR availablePANTHERPTHR11889HEDGEHOGcoord: 125..281
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..311
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availableCDDcd00081Hintcoord: 128..256
e-value: 2.23427E-13
score: 64.2126
IPR036844Hint domain superfamilySUPERFAMILY51294Hedgehog/intein (Hint) domaincoord: 128..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:326690..327625 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6740.t1Ggra6740.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 326690..327625 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6740.t1 ID=Ggra6740.t1|Name=Ggra6740.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MIKPFPFSSVVCVLLFISVCTASIAPCDENDPKSLCLTPLKHRNWYGTSA
TLRKSRGGGGSRGSSGSRGSVGSNSRRRPFRRPGRRPGGFGGDDDEDEFV
GEEEQEQDESDFFDFGDDDDDDDDDDLCFPADATVHTLNRGDIAMRQLQV
GDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVY
TRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVV
DGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVRWVLP
FVPSGVNSMLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003587Hint_dom_N
IPR001767Hedgehog_Hint
IPR036844Hint_dom_sf