Ggra6740.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6740.t1
Unique Name	Ggra6740.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:326690..327625 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6500.XP_005092570.1
Preferred name	qua-1
PFAMs	AIG1,HH_signal,Hint
Max annot lvl	2759\|Eukaryota
GOs	GO:0002119,GO:0002164,GO:0005575,GO:0005576,GO:0007275,GO:0008150,GO:0009791,GO:0018996,GO:0031012,GO:0032501,GO:0032502,GO:0042303,GO:0044421,GO:0048856,GO:0060102,GO:0062023
Evalue	1.14e-16
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6740	Ggra6740	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 326690..327625 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6740.t1.stop1	Ggra6740.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 326690..326692 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6740.t1.CDS1	Ggra6740.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 326690..327625 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6740.t1.exon1	Ggra6740.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 326690..327625 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6740.t1.start1	Ggra6740.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 327623..327625 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6740.t1	Ggra6740.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 326690..327625 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:326690..327625-
coding sequence from alignment at tig00000056_pilon:326690..327625-

mRNA sequence

>Ggra6740.t1 ID=Ggra6740.t1|Name=Ggra6740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MIKPFPFSSVVCVLLFISVCTASIAPCDENDPKSLCLTPLKHRNWYGTSA
TLRKSRGGGGSRGSSGSRGSVGSNSRRRPFRRPGRRPGGFGGDDDEDEFV
GEEEQEQDESDFFDFGDDDDDDDDDDLCFPADATVHTLNRGDIAMRQLQV
GDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVY
TRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVV
DGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVRWVLP
FVPSGVNSMLA*

spliced messenger RNA

>Ggra6740.t1 ID=Ggra6740.t1|Name=Ggra6740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000056_pilon:326690..327625- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAAGCCGTTCCCGTTCAGCTCTGTTGTTTGCGTTCTACTATTCAT
TTCCGTTTGTACAGCGTCCATTGCCCCTTGCGACGAGAACGACCCCAAGT
CATTATGTCTCACCCCGTTGAAACATCGTAATTGGTACGGTACGTCCGCT
ACTCTCCGCAAGTCTCGCGGAGGTGGCGGTTCGCGAGGGTCGAGCGGGTC
GCGCGGCTCAGTAGGATCCAATTCTCGCCGAAGACCCTTCAGGAGACCAG
GCCGTCGCCCTGGTGGCTTTGGCGGTGATGACGATGAAGACGAGTTTGTC
GGTGAAGAAGAACAAGAACAAGATGAGTCTGACTTTTTCGATTTTGGCGA
TGACGACGATGACGACGATGACGACGACTTGTGTTTCCCGGCTGATGCCA
CTGTACATACTTTGAATCGGGGAGACATTGCAATGCGTCAACTACAGGTT
GGAGATGAGGTGCGAGTGGCCAGCCACAATGAACAGCGTTACAGTGAGGT
GTTTACCTTTTCACACCGCGTTCAGACTTCTTTCTTTCCGTTTAAGAGTC
TGATCACAGAGAAGGGAGCGCTCACCGTAACCGCTGGTCACTATGTGTAC
ACAAGAAACGCTCTCATCGCAGCCAAATCATTACGACCGGGCGATGAATT
ACAATTAGCGGACGCCTCGTTTACGAAGGTGTTAGATGTACAGAACGTGT
GGCGGAAGGGACTTTATAACCCGCACACCTTTGACGGCGAACTAGTTGTT
GATGGCTTCCGCGTCAGTTCATATACCACTAGTGTTGAGGCAAGTGTTGC
GAATGCGCTACTCACACCACTACGTGCTGTATACAAAGTGTTCGGTATCG
ACATTACTGCTGGCGCGCTGGAAAGACCGCTTGTGAGATGGGTGTTGCCG
TTCGTACCATCCGGGGTCAACAGTATGTTGGCATGA

protein sequence of Ggra6740.t1

>Ggra6740.t1 ID=Ggra6740.t1|Name=Ggra6740.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MIKPFPFSSVVCVLLFISVCTASIAPCDENDPKSLCLTPLKHRNWYGTSA
TLRKSRGGGGSRGSSGSRGSVGSNSRRRPFRRPGRRPGGFGGDDDEDEFV
GEEEQEQDESDFFDFGDDDDDDDDDDLCFPADATVHTLNRGDIAMRQLQV
GDEVRVASHNEQRYSEVFTFSHRVQTSFFPFKSLITEKGALTVTAGHYVY
TRNALIAAKSLRPGDELQLADASFTKVLDVQNVWRKGLYNPHTFDGELVV
DGFRVSSYTTSVEASVANALLTPLRAVYKVFGIDITAGALERPLVRWVLP
FVPSGVNSMLA*

mRNA from alignment at tig00000056_pilon:326690..327625-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6740.t1 ID=Ggra6740.t1|Name=Ggra6740.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000056_pilon:326690..327625- (Gracilaria gracilis GNS1m male)
ATGATCAAGCCGTTCCCGTTCAGCTCTGTTGTTTGCGTTCTACTATTCAT
TTCCGTTTGTACAGCGTCCATTGCCCCTTGCGACGAGAACGACCCCAAGT
CATTATGTCTCACCCCGTTGAAACATCGTAATTGGTACGGTACGTCCGCT
ACTCTCCGCAAGTCTCGCGGAGGTGGCGGTTCGCGAGGGTCGAGCGGGTC
GCGCGGCTCAGTAGGATCCAATTCTCGCCGAAGACCCTTCAGGAGACCAG
GCCGTCGCCCTGGTGGCTTTGGCGGTGATGACGATGAAGACGAGTTTGTC
GGTGAAGAAGAACAAGAACAAGATGAGTCTGACTTTTTCGATTTTGGCGA
TGACGACGATGACGACGATGACGACGACTTGTGTTTCCCGGCTGATGCCA
CTGTACATACTTTGAATCGGGGAGACATTGCAATGCGTCAACTACAGGTT
GGAGATGAGGTGCGAGTGGCCAGCCACAATGAACAGCGTTACAGTGAGGT
GTTTACCTTTTCACACCGCGTTCAGACTTCTTTCTTTCCGTTTAAGAGTC
TGATCACAGAGAAGGGAGCGCTCACCGTAACCGCTGGTCACTATGTGTAC
ACAAGAAACGCTCTCATCGCAGCCAAATCATTACGACCGGGCGATGAATT
ACAATTAGCGGACGCCTCGTTTACGAAGGTGTTAGATGTACAGAACGTGT
GGCGGAAGGGACTTTATAACCCGCACACCTTTGACGGCGAACTAGTTGTT
GATGGCTTCCGCGTCAGTTCATATACCACTAGTGTTGAGGCAAGTGTTGC
GAATGCGCTACTCACACCACTACGTGCTGTATACAAAGTGTTCGGTATCG
ACATTACTGCTGGCGCGCTGGAAAGACCGCTTGTGAGATGGGTGTTGCCG
TTCGTACCATCCGGGGTCAACAGTATGTTGGCATGA

Coding sequence (CDS) from alignment at tig00000056_pilon:326690..327625-

>Ggra6740.t1 ID=Ggra6740.t1|Name=Ggra6740.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000056_pilon:326690..327625- (Gracilaria gracilis GNS1m male)
ATGATCAAGCCGTTCCCGTTCAGCTCTGTTGTTTGCGTTCTACTATTCAT
TTCCGTTTGTACAGCGTCCATTGCCCCTTGCGACGAGAACGACCCCAAGT
CATTATGTCTCACCCCGTTGAAACATCGTAATTGGTACGGTACGTCCGCT
ACTCTCCGCAAGTCTCGCGGAGGTGGCGGTTCGCGAGGGTCGAGCGGGTC
GCGCGGCTCAGTAGGATCCAATTCTCGCCGAAGACCCTTCAGGAGACCAG
GCCGTCGCCCTGGTGGCTTTGGCGGTGATGACGATGAAGACGAGTTTGTC
GGTGAAGAAGAACAAGAACAAGATGAGTCTGACTTTTTCGATTTTGGCGA
TGACGACGATGACGACGATGACGACGACTTGTGTTTCCCGGCTGATGCCA
CTGTACATACTTTGAATCGGGGAGACATTGCAATGCGTCAACTACAGGTT
GGAGATGAGGTGCGAGTGGCCAGCCACAATGAACAGCGTTACAGTGAGGT
GTTTACCTTTTCACACCGCGTTCAGACTTCTTTCTTTCCGTTTAAGAGTC
TGATCACAGAGAAGGGAGCGCTCACCGTAACCGCTGGTCACTATGTGTAC
ACAAGAAACGCTCTCATCGCAGCCAAATCATTACGACCGGGCGATGAATT
ACAATTAGCGGACGCCTCGTTTACGAAGGTGTTAGATGTACAGAACGTGT
GGCGGAAGGGACTTTATAACCCGCACACCTTTGACGGCGAACTAGTTGTT
GATGGCTTCCGCGTCAGTTCATATACCACTAGTGTTGAGGCAAGTGTTGC
GAATGCGCTACTCACACCACTACGTGCTGTATACAAAGTGTTCGGTATCG
ACATTACTGCTGGCGCGCTGGAAAGACCGCTTGTGAGATGGGTGTTGCCG
TTCGTACCATCCGGGGTCAACAGTATGTTGGCATGA