Ggra6725.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6725.t1
Unique NameGgra6725.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length483
Homology
BLAST of Ggra6725.t1 vs. uniprot
Match: A0A2V3ISD1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISD1_9FLOR)

HSP 1 Score: 209 bits (533), Expect = 8.060e-63
Identity = 102/131 (77.86%), Postives = 111/131 (84.73%), Query Frame = 0
Query:  350 MNRLRALLVPDHDSKMALLHLNPLLFVLGDSLLKDADLLAKYAIKQRRAVLFINVYGLGYFLWTLFCTRFNGGHWPYPFQYRFSPVQHLMFVAFALTCGTYLTRTGFRIHARLDRRRRRRHVCAEKDRCTR 480
            MNRLRA +VPDHDSKMALLHLNPLLF LGDSLLKDADLLAKYAIKQ RAVL ++ YG+ YF WTLFCTRFNGGHWPYPFQ  FSPVQHLMF+A +++C  YLTR GFR H RLDRRRRRR   AEK+R  R
Sbjct:    1 MNRLRAHMVPDHDSKMALLHLNPLLFALGDSLLKDADLLAKYAIKQSRAVLLVSAYGVMYFFWTLFCTRFNGGHWPYPFQMAFSPVQHLMFMALSVSCAIYLTRAGFRFHGRLDRRRRRRLALAEKERSAR 131          
BLAST of Ggra6725.t1 vs. uniprot
Match: A0A2V3ISE1 (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISE1_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 9.620e-55
Identity = 91/153 (59.48%), Postives = 117/153 (76.47%), Query Frame = 0
Query:   37 LNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLR 189
            +N+K+RFL+RDSYVVDLGSAPGGFA+ VAK+++LD+R  +W   GK  V R +  R+RS+ FGKLVCVDV DM +I GA+FIRG L + D+  RI YAL G+EADV++CDAAPSTTG  E DH RCV +A+A L + +A+L NGG  V+K  R
Sbjct:    1 MNNKYRFLRRDSYVVDLGSAPGGFAAAVAKTVKLDDRARRWDQEGKRLVKRRITGRRRSRPFGKLVCVDVVDMAEIGGASFIRGSLMDDDVEHRIGYALNGDEADVVLCDAAPSTTGNSEMDHIRCVDMAKAGLGVANAVLRNGGVFVVKVFR 153          
BLAST of Ggra6725.t1 vs. uniprot
Match: R7QN42 (FtsJ domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN42_CHOCR)

HSP 1 Score: 193 bits (490), Expect = 1.220e-54
Identity = 102/239 (42.68%), Postives = 150/239 (62.76%), Query Frame = 0
Query:    8 WQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKF-RFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVC-KWKLR-------GKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELYYVCERFVPRELSAD 237
            W+ +R  D+Y++RA  EG+R+RAAYKL E+N +F  FL++ + VVDLG+APGGF+ V +K I L      +W            +++ R+VG  +  + FG+L+CVD +DM  + GA F+RG +   +   +I YAL G EADV++ D APSTTG++E+DH + +QLA  AL + D +L NGGT   K   GGDE      L + F++ K  KP AS K S+E+YY+ + FVP  L+ +
Sbjct:   20 WKQQRDADVYAYRAIKEGMRSRAAYKLDEINKRFGNFLRQGAIVVDLGAAPGGFSVVASKHIHLKSITHDRWNSIEDMDSHFAPADIARSVGGMQVRRKFGQLICVDKQDMDPVPGAVFVRGDMNTDNTYQKILYALNGKEADVVISDMAPSTTGQKEQDHFQIMQLAEEALHVADKVLRNGGTFCCKIFSGGDEVDFRKDLESSFLKVKGFKPAASRKSSKEIYYIAKGFVPAHLTTE 258          
BLAST of Ggra6725.t1 vs. uniprot
Match: M2XDN1 (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XDN1_GALSU)

HSP 1 Score: 159 bits (403), Expect = 3.320e-40
Identity = 91/223 (40.81%), Postives = 135/223 (60.54%), Query Frame = 0
Query:    8 WQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLR-------GKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELY 223
            W+ +R KD+Y+  A  EGLR+RAAYKL+E+ ++F F+++ S VVDLG+APGG++ V  + + L  +V  WK+         +  V R+ GR  R +  G+L+ VD+ DM+ I GATFI+G   E +   RI   L G+E DV++ D  P+T+G +E DH R ++LA +A       L NGGT + K  +G  E +L   L   FV+ K ++PKAS  +S E Y
Sbjct:   29 WKIQRRKDLYAQAAYNEGLRSRAAYKLLEMMEQFHFIQQTSVVVDLGAAPGGWSLVAKQYLELCSKV-PWKVPLDELASVPQVNVMRSTGRLVR-RTRGRLISVDISDMEPIAGATFIQGDFCEQETQQRITKVLYGDEVDVVLSDMCPNTSGVKELDHERIIELAFSASHFAIHHLCNGGTFLCKIFQGAQEKRLNTFLEEHFVQVKRIRPKASKSESSECY 249          
BLAST of Ggra6725.t1 vs. uniprot
Match: A0A7T9CB63 (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7T9CB63_9PROT)

HSP 1 Score: 138 bits (348), Expect = 1.080e-34
Identity = 81/222 (36.49%), Postives = 121/222 (54.50%), Query Frame = 0
Query:    8 WQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELYYVCERF 229
            W AR+ KD Y   A  +G R+RAAYKL+EL+++F  L+    V+DLG+APGG++ V AK+++LDE                        G  ++V VD+  M+ I   T +       D  A I  A  G + D+++ D APST G  + DH R + LA AA +L+  +L  GG+ V KT +GGD     A L+++F   + VKP+AS K S E++ + + F
Sbjct:   11 WLARQHKDPYVAAAKRDGWRSRAAYKLLELDERFHLLRPGQSVLDLGAAPGGWSEVAAKALKLDEN-----------------------GTSRVVAVDILPMESIGRVTILTHDFMSEDAPATIIAAC-GGKVDLVLSDMAPSTIGHAQTDHWRQMALAEAAADLIPHILKKGGSFVCKTFQGGDSAAFFAKLKSQFTTIRRVKPEASRKDSVEMFILAQGF 208          
BLAST of Ggra6725.t1 vs. uniprot
Match: A0A2D5FXX9 (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Pelagibacterales bacterium TaxID=2026776 RepID=A0A2D5FXX9_9PROT)

HSP 1 Score: 138 bits (348), Expect = 1.780e-34
Identity = 83/228 (36.40%), Postives = 123/228 (53.95%), Query Frame = 0
Query:    8 WQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELYYVCERFVPRELS 235
            W  R+  D Y   A  +G R+R+AYKL+ELNDKF+FLK+   V+DLG+APGG++ V AK I L +                          GKLV VD++D+  I G +FI G + + ++   I   L+  +ADV++ D APS +G R  D TR + LA  AL+    LL   G+   K +RG  E +L +++R  F   K  KP++S K S E++ +   F  + L+
Sbjct:   27 WLERQLNDPYVVAAKEDGYRSRSAYKLIELNDKFKFLKKSKTVIDLGAAPGGWSQVAAKIIGLPKT-------------------------GKLVAVDIQDLVPIEGLSFINGSIMDEEIIEIIKKKLEC-QADVVLSDMAPSASGHRNTDQTRALLLAELALDTATRLLKKEGSFCCKLIRGKGEEELVSVMRRYFSSIKRYKPESSRKDSAEIFLIGLNFNDQNLA 228          
BLAST of Ggra6725.t1 vs. uniprot
Match: A0A7C9GD67 (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9GD67_9PROT)

HSP 1 Score: 138 bits (348), Expect = 2.950e-34
Identity = 91/232 (39.22%), Postives = 126/232 (54.31%), Query Frame = 0
Query:    7 SWQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELYYVCERFVPRELSADG 238
            +W  R+ +D Y   A  +GLR+RAAYKLMEL+D+F FLK  + VVDLG+APGG++ V A+ +R                T + G+       G++V +D+E+M  I G   +       D  AR+  AL G  ADV++ D A   TG    DH R + L  AAL+    +LA GG  + K LRGG E +L  +LR  F   + VKP AS K+S E+Y V   F  R+ +A G
Sbjct:   40 NWLKRQLRDPYVLAAQRQGLRSRAAYKLMELDDRFHFLKPGARVVDLGAAPGGWSLVAAERVR---------------ATASDGKA------GRVVAIDLEEMAPIAGVAILHLDFLADDAPARLRAAL-GGSADVVLSDMAAPATGHTRIDHLRIMALLEAALDFALDVLAPGGAFIGKVLRGGAERELLDMLRHNFAEVRHVKPPASRKESAEIYVVALGF--RKSAATG 247          
BLAST of Ggra6725.t1 vs. uniprot
Match: A0A0A1PGW1 (Ribosomal RNA large subunit methyltransferase E n=1 Tax=bacterium YEK0313 TaxID=1522316 RepID=A0A0A1PGW1_9BACT)

HSP 1 Score: 137 bits (346), Expect = 4.150e-34
Identity = 86/231 (37.23%), Postives = 120/231 (51.95%), Query Frame = 0
Query:    8 WQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELYYVCERFVPRELSADG 238
            W  R+  D Y  RA  +G R+RAAYKL+E++DK R LK    +VDLG+APGG+  V AK I L+                        KG GK+V +D+  +  + G  FI+G     D   R+   L G EADV++ D A + TG ++ DH + V LA  A++    +LA GG  + K L+GG E QL A L+  F   K +KP+AS   S ELY +   +  R  +  G
Sbjct:   29 WLERQLNDPYVARAKRDGWRSRAAYKLIEIDDKVRLLKPGQRIVDLGAAPGGWLQVAAKRIGLE------------------------KGQGKIVGIDLLAIDPVPGVAFIQGDFTAEDAPDRLKELL-GGEADVVLSDMAANATGHKQTDHLKIVYLAELAIDFARQVLAPGGHFLCKVLQGGTEGQLLADLKRDFTTVKHIKPQASRADSSELYVLAMGYRGRPAAGSG 234          
BLAST of Ggra6725.t1 vs. uniprot
Match: RlmE family RNA methyltransferase n=1 Tax=Caldovatus sp. SYSU G05006 TaxID=2865671 RepID=UPI001C686E97 (RlmE family RNA methyltransferase n=1 Tax=Caldovatus sp. SYSU G05006 TaxID=2865671 RepID=UPI001C686E97)

HSP 1 Score: 137 bits (346), Expect = 4.740e-34
Identity = 86/237 (36.29%), Postives = 124/237 (52.32%), Query Frame = 0
Query:    8 WQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELYYVCERFVPRELSADGGATAAG 244
            W AR+  D Y   A  +GLR+RAA+KL+EL+ KF  L+  + VVDLG+APGG+  V A+ +            G +               G++V +D+  M+ + GA  ++G   E++   ++  AL G EAD+++ D AP+TTG    DH R + LA  AL+    +LA GG  V K  +GG E +L A L+  F   +  KP AS K+S ELY V   F     +  GG  A G
Sbjct:   28 WLARQLNDPYVRAAKAQGLRSRAAFKLLELDAKFHLLRPGARVVDLGAAPGGWTQVAARKV------------GPA---------------GRVVALDLLPMEPVPGAVVLQGDFREAETERQVEEAL-GGEADLVLSDMAPNTTGHAATDHMRIMALAELALDFALRVLAPGGAFVAKVFQGGAERELLAALKRNFAAVRHAKPPASRKESSELYVVATGFRGGAGARTGGEGAPG 236          
BLAST of Ggra6725.t1 vs. uniprot
Match: A0A847ZSC8 (Ribosomal RNA large subunit methyltransferase E n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZSC8_9HYPH)

HSP 1 Score: 137 bits (344), Expect = 7.200e-34
Identity = 79/223 (35.43%), Postives = 115/223 (51.57%), Query Frame = 0
Query:    7 SWQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYVVDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGKLVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPSTTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALLRARFVRSKAVKPKASVKQSRELYYVCERF 229
            +W  R+  D Y H A   G R+RAA+KL E++DK++FLK    VVDLG+APGG++ V A+ ++  +                        G GK+V +D+  M +I+G TF +    + D    +  AL G +ADV++ D A   TG R+ DH   + L  A  +    +L  GGT + K LRGG E QL  L++  F   + VKP AS   S EL+ +   F
Sbjct:   31 NWLERQLNDPYVHEAKKLGYRSRAAFKLSEIDDKYKFLKVGGRVVDLGAAPGGWSQVSAQRVKSVD------------------------GKGKVVAIDMHSMDEISGVTFFKKDFYDEDAPDVLIAALGGEKADVVLSDMASHATGHRQTDHINIIALVEAGYDFARQVLKPGGTYLAKVLRGGTESQLLTLMKKDFATVRHVKPMASRDDSAELFVLATGF 229          
The following BLAST results are available for this feature:
BLAST of Ggra6725.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISD18.060e-6377.86Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISE19.620e-5559.48Ribosomal RNA large subunit methyltransferase E n=... [more]
R7QN421.220e-5442.68FtsJ domain-containing protein n=1 Tax=Chondrus cr... [more]
M2XDN13.320e-4040.81Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A7T9CB631.080e-3436.49Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A2D5FXX91.780e-3436.40Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A7C9GD672.950e-3439.22Ribosomal RNA large subunit methyltransferase E n=... [more]
A0A0A1PGW14.150e-3437.23Ribosomal RNA large subunit methyltransferase E n=... [more]
RlmE family RNA methyltransferase n=1 Tax=Caldovatus sp. SYSU G05006 TaxID=2865671 RepID=UPI001C686E974.740e-3436.29RlmE family RNA methyltransferase n=1 Tax=Caldovat... [more]
A0A847ZSC87.200e-3435.43Ribosomal RNA large subunit methyltransferase E n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006838FAR-17a/AIG1-like proteinPFAMPF04750Far-17a_AIG1coord: 272..457
e-value: 1.9E-11
score: 43.6
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 23..235
e-value: 1.9E-47
score: 163.4
NoneNo IPR availablePIRSRPIRSR005461-1PIRSR005461-1coord: 6..229
e-value: 3.8E-55
score: 184.6
NoneNo IPR availablePANTHERPTHR10920RIBOSOMAL RNA METHYLTRANSFERASEcoord: 13..233
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 306..325
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 416..434
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 365..382
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..281
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 435..456
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 346..364
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 282..305
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 457..482
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 383..397
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 398..415
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 326..345
NoneNo IPR availableTMHMMTMhelixcoord: 365..382
NoneNo IPR availableTMHMMTMhelixcoord: 326..345
NoneNo IPR availableTMHMMTMhelixcoord: 436..458
NoneNo IPR availableTMHMMTMhelixcoord: 283..305
NoneNo IPR availableTMHMMTMhelixcoord: 399..421
IPR002877Ribosomal RNA methyltransferase FtsJ domainPFAMPF01728FtsJcoord: 27..229
e-value: 3.7E-42
score: 144.5
IPR015507Ribosomal RNA large subunit methyltransferase EHAMAPMF_01547RNA_methyltr_Ecoord: 10..230
score: 24.663864
IPR029063S-adenosyl-L-methionine-dependent methyltransferaseSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 26..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:297745..299703 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6725.t1Ggra6725.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 297745..299703 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6725.t1 ID=Ggra6725.t1|Name=Ggra6725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MARQLCSWQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYV
VDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGK
LVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPS
TTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALL
RARFVRSKAVKPKASVKQSRELYYVCERFVPRELSADGGATAAGLTPEQV
EAALSSYVQLVVLKAPGRTPLPAAVAFGRDSLFLTFHGNFHCTWYACLCL
MNAVLQLGRRARSRPARAVERVVHRFTTVLFPLSAFVGLAYYLILHFHPM
NRLRALLVPDHDSKMALLHLNPLLFVLGDSLLKDADLLAKYAIKQRRAVL
FINVYGLGYFLWTLFCTRFNGGHWPYPFQYRFSPVQHLMFVAFALTCGTY
LTRTGFRIHARLDRRRRRRHVCAEKDRCTRRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006838Far-17a_AIG1
IPR002877rRNA_MeTrfase_FtsJ_dom
IPR015507rRNA-MeTfrase_E
IPR029063SAM-dependent_MTases