Ggra6725.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6725.t1
Unique NameGgra6725.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:297745..299703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704622.1
Preferred nameFTSJ2
PFAMsFtsJ
Max annot lvl2759|Eukaryota
KEGG koko:K01285,ko:K02427,ko:K06638,ko:K15508
KEGG Pathwayko04110,ko04614,ko04914,ko04974,ko05203,map04110,map04614,map04914,map04974,map05203
GOsGO:0000154,GO:0000451,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008283,GO:0008649,GO:0008650,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016436,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0031974,GO:0031981,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Evalue7.68e-40
EggNOG OGsCOG0293@1|root,KOG4589@2759|Eukaryota
EC2.1.1.166,2.1.1.168,3.4.16.2
DescriptionrRNA (uridine-2'-O-)-methyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01002,ko03009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6725Ggra6725Gracilaria gracilis GNS1m malegenetig00000056_pilon 297745..299703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6725.t1Ggra6725.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 297745..299703 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6725.t1.start1Ggra6725.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 297745..297747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6725.t1.CDS1Ggra6725.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 297745..298044 +
Ggra6725.t1.CDS2Ggra6725.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 298136..298603 +
Ggra6725.t1.CDS3Ggra6725.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 299023..299703 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6725.t1.exon1Ggra6725.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 297745..298044 +
Ggra6725.t1.exon2Ggra6725.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 298136..298603 +
Ggra6725.t1.exon3Ggra6725.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 299023..299703 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6725.t1.intron1Ggra6725.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 298045..298135 +
Ggra6725.t1.intron2Ggra6725.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 298604..299022 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6725.t1.stop1Ggra6725.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 299701..299703 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6725.t1 ID=Ggra6725.t1|Name=Ggra6725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MARQLCSWQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYV
VDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGK
LVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPS
TTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALL
RARFVRSKAVKPKASVKQSRELYYVCERFVPRELSADGGATAAGLTPEQV
EAALSSYVQLVVLKAPGRTPLPAAVAFGRDSLFLTFHGNFHCTWYACLCL
MNAVLQLGRRARSRPARAVERVVHRFTTVLFPLSAFVGLAYYLILHFHPM
NRLRALLVPDHDSKMALLHLNPLLFVLGDSLLKDADLLAKYAIKQRRAVL
FINVYGLGYFLWTLFCTRFNGGHWPYPFQYRFSPVQHLMFVAFALTCGTY
LTRTGFRIHARLDRRRRRRHVCAEKDRCTRRS*
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spliced messenger RNA

>Ggra6725.t1 ID=Ggra6725.t1|Name=Ggra6725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000056_pilon:297745..299703+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCGGCAGCTGTGCAGCTGGCAAGCGCGTCGCGCCAAGGACATTTA
CTCGCACCGCGCGGCGGTGGAAGGGCTGCGTAACCGCGCGGCATACAAGT
TGATGGAACTGAACGACAAGTTCCGCTTCTTGAAACGCGACTCGTACGTG
GTGGACTTGGGATCGGCGCCCGGCGGGTTTGCTAGCGTGGTGGCCAAGAG
CATCAGGCTGGACGAGCGTGTGTGCAAGTGGAAGCTGCGCGGAAAGTCAG
AGGTGACCAGGACGGTTGGCAGGCGGAAAAGGAGCAAAGGGTTTGGAAAG
CTGGTGTGCGTTGACGTGGAAGACATGAAACAAATCAACGGCGCCACGTT
CATTCGAGGAAGGCTTGAAGAAAGCGACATGAGCGCGCGCATCGCGTACG
CGCTGCAAGGAAACGAGGCGGACGTGATTGTGTgcgacgcggcgccgagc
accacgggcgagcgcgagcgcgaccacacgcgctgcgtgcagctcgcacg
cgcggcgcTCGAGCTGGTGGACGCGCTGCTGGCCAACGGCGGCACGCTGG
TGATCAAGACGCTGCGCGGCGGCGACGAGCCGCAGCTGGCCGCGCTGCTG
CGCGCGCGCTTCGTGCGCAGCAAGGCGGTCAAGCCCAAGGCCAGCGTCAA
GCAGTCGCGCGAGCTGTACTACGTCTGCGAGCGCTTCGTGCCGCGCGAGC
TCAGCGCCGACGGAGGCGCCACCGCCGCCGGGCTCACGCCCGAGCAGGTG
GAGGCCGCGCTGAGCAGCTACGTGCAGCTGGTGGTTTTGAAGGCGCCCGG
GCGCACGCCGCTGCCGGCCGCGGTGGCGTTCGGCAGGGACTCGTTGTTCC
TCACGTTTCACGGCAACTTTCACTGCACTTGGTACGCGTGCTTGTGTCTG
ATGAACGCCGTGCTGCAGCTGGGGCGGCGCGCGCGCTCCAGGCCGGCGCG
CGCTGTGGAGAGGGTGGTGCATCGCTTCACCACGGTGCTGTTCCCGCTGT
CGGCGTTTGTGGGGCTTGCTTATTACCTCATTCTACACTTTCACCCCATG
AACCGACTGCGCGCGCTGCTGGTGCCGGACCACGACTCCAAGATGGCGTT
GCTGCACCTCAACCCGCTGCTGTTCGTGCTTGGCGATAGCCTGCTCAAGG
ACGCGGACCTTTTGGCAAAGTATGCTATCAAGCAGCGGCGCGCCGTGTTG
TTTATCAATGTTTACGGCCTGGGCTACTTCTTGTGGACGTTGTTCTGCAC
CAGGTTCAATGGCGGCCACTGGCCGTACCCGTTTCAGTACCGCTTCTCAC
CCGTGCAACACCTCATGTTCGTCGCCTTCGCTCTCACCTGTGGAACGTAT
CTCACGCGCACTGGCTTTCGAATTCACGCGCGATTGGATCGTCGACGGAG
GAGACGACACGTATGTGCCGAGAAGGATAGGTGCACGCGTCGCTCGTAG
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protein sequence of Ggra6725.t1

>Ggra6725.t1 ID=Ggra6725.t1|Name=Ggra6725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MARQLCSWQARRAKDIYSHRAAVEGLRNRAAYKLMELNDKFRFLKRDSYV
VDLGSAPGGFASVVAKSIRLDERVCKWKLRGKSEVTRTVGRRKRSKGFGK
LVCVDVEDMKQINGATFIRGRLEESDMSARIAYALQGNEADVIVCDAAPS
TTGERERDHTRCVQLARAALELVDALLANGGTLVIKTLRGGDEPQLAALL
RARFVRSKAVKPKASVKQSRELYYVCERFVPRELSADGGATAAGLTPEQV
EAALSSYVQLVVLKAPGRTPLPAAVAFGRDSLFLTFHGNFHCTWYACLCL
MNAVLQLGRRARSRPARAVERVVHRFTTVLFPLSAFVGLAYYLILHFHPM
NRLRALLVPDHDSKMALLHLNPLLFVLGDSLLKDADLLAKYAIKQRRAVL
FINVYGLGYFLWTLFCTRFNGGHWPYPFQYRFSPVQHLMFVAFALTCGTY
LTRTGFRIHARLDRRRRRRHVCAEKDRCTRRS*
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mRNA from alignment at tig00000056_pilon:297745..299703+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6725.t1 ID=Ggra6725.t1|Name=Ggra6725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1959bp|location=Sequence derived from alignment at tig00000056_pilon:297745..299703+ (Gracilaria gracilis GNS1m male)
ATGGCGCGGCAGCTGTGCAGCTGGCAAGCGCGTCGCGCCAAGGACATTTA
CTCGCACCGCGCGGCGGTGGAAGGGCTGCGTAACCGCGCGGCATACAAGT
TGATGGAACTGAACGACAAGTTCCGCTTCTTGAAACGCGACTCGTACGTG
GTGGACTTGGGATCGGCGCCCGGCGGGTTTGCTAGCGTGGTGGCCAAGAG
CATCAGGCTGGACGAGCGTGTGTGCAAGTGGAAGCTGCGCGGAAAGTCAG
AGGTGACCAGGACGGTTGGCAGGCGGAAAAGGAGCAAAGGGTTTGGAAAG
GTACGTACGCAAAAGCTTGCTGCTCATAGAAGACACGCGTGGAGCATACT
GTACGACTGACCACGGCGTGCTTGTTGTCGCTACACGGTAGCTGGTGTGC
GTTGACGTGGAAGACATGAAACAAATCAACGGCGCCACGTTCATTCGAGG
AAGGCTTGAAGAAAGCGACATGAGCGCGCGCATCGCGTACGCGCTGCAAG
GAAACGAGGCGGACGTGATTGTGTgcgacgcggcgccgagcaccacgggc
gagcgcgagcgcgaccacacgcgctgcgtgcagctcgcacgcgcggcgcT
CGAGCTGGTGGACGCGCTGCTGGCCAACGGCGGCACGCTGGTGATCAAGA
CGCTGCGCGGCGGCGACGAGCCGCAGCTGGCCGCGCTGCTGCGCGCGCGC
TTCGTGCGCAGCAAGGCGGTCAAGCCCAAGGCCAGCGTCAAGCAGTCGCG
CGAGCTGTACTACGTCTGCGAGCGCTTCGTGCCGCGCGAGCTCAGCGCCG
ACGGAGGCGCCACCGCCGCCGGGCTCACGCCCGAGCAGGTGGAGGCCGCG
CTGAGCAGCGTGCGCGCTCGCGCGCGCGTCGCCCCTCCCACGGAGTAACT
GTATTAGATGGGCGTTTACGCGTGGCGCCCCACGTGGTCGGAAAGCGACG
CCTCTCGCGCTGCTGCCGCACACGCACGCGCGCGCGCGCCTTTTTTAACG
CGCGCAGCGCTTCGCGCGCGGCCTCGCTGGCTGCTGTCGCGCCCCGCCGT
CCGCGCGCGCGCTCCCTGCAATGATGATGAAACCCCGCCACGCAgcagcg
gcagcggcagcggcagcggcagcgCgcgccgtcgccgccgcacgcgcgcg
gcgcgcggcgacgccgcgcgccgtcgccgcggctgggcggcggcgCGCTG
GTACCGCCTTCGCGCGCGCTCCGTCTGGCTCGGCTGCTGTTCTACCTGCT
GGCCGCGCCCAACTTTCTGTACGCGCAGTACGTGCAGCTGGTGGTTTTGA
AGGCGCCCGGGCGCACGCCGCTGCCGGCCGCGGTGGCGTTCGGCAGGGAC
TCGTTGTTCCTCACGTTTCACGGCAACTTTCACTGCACTTGGTACGCGTG
CTTGTGTCTGATGAACGCCGTGCTGCAGCTGGGGCGGCGCGCGCGCTCCA
GGCCGGCGCGCGCTGTGGAGAGGGTGGTGCATCGCTTCACCACGGTGCTG
TTCCCGCTGTCGGCGTTTGTGGGGCTTGCTTATTACCTCATTCTACACTT
TCACCCCATGAACCGACTGCGCGCGCTGCTGGTGCCGGACCACGACTCCA
AGATGGCGTTGCTGCACCTCAACCCGCTGCTGTTCGTGCTTGGCGATAGC
CTGCTCAAGGACGCGGACCTTTTGGCAAAGTATGCTATCAAGCAGCGGCG
CGCCGTGTTGTTTATCAATGTTTACGGCCTGGGCTACTTCTTGTGGACGT
TGTTCTGCACCAGGTTCAATGGCGGCCACTGGCCGTACCCGTTTCAGTAC
CGCTTCTCACCCGTGCAACACCTCATGTTCGTCGCCTTCGCTCTCACCTG
TGGAACGTATCTCACGCGCACTGGCTTTCGAATTCACGCGCGATTGGATC
GTCGACGGAGGAGACGACACGTATGTGCCGAGAAGGATAGGTGCACGCGT
CGCTCGTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:297745..299703+

>Ggra6725.t1 ID=Ggra6725.t1|Name=Ggra6725.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000056_pilon:297745..299703+ (Gracilaria gracilis GNS1m male)
ATGGCGCGGCAGCTGTGCAGCTGGCAAGCGCGTCGCGCCAAGGACATTTA
CTCGCACCGCGCGGCGGTGGAAGGGCTGCGTAACCGCGCGGCATACAAGT
TGATGGAACTGAACGACAAGTTCCGCTTCTTGAAACGCGACTCGTACGTG
GTGGACTTGGGATCGGCGCCCGGCGGGTTTGCTAGCGTGGTGGCCAAGAG
CATCAGGCTGGACGAGCGTGTGTGCAAGTGGAAGCTGCGCGGAAAGTCAG
AGGTGACCAGGACGGTTGGCAGGCGGAAAAGGAGCAAAGGGTTTGGAAAG
CTGGTGTGCGTTGACGTGGAAGACATGAAACAAATCAACGGCGCCACGTT
CATTCGAGGAAGGCTTGAAGAAAGCGACATGAGCGCGCGCATCGCGTACG
CGCTGCAAGGAAACGAGGCGGACGTGATTGTGTgcgacgcggcgccgagc
accacgggcgagcgcgagcgcgaccacacgcgctgcgtgcagctcgcacg
cgcggcgcTCGAGCTGGTGGACGCGCTGCTGGCCAACGGCGGCACGCTGG
TGATCAAGACGCTGCGCGGCGGCGACGAGCCGCAGCTGGCCGCGCTGCTG
CGCGCGCGCTTCGTGCGCAGCAAGGCGGTCAAGCCCAAGGCCAGCGTCAA
GCAGTCGCGCGAGCTGTACTACGTCTGCGAGCGCTTCGTGCCGCGCGAGC
TCAGCGCCGACGGAGGCGCCACCGCCGCCGGGCTCACGCCCGAGCAGGTG
GAGGCCGCGCTGAGCAGCTACGTGCAGCTGGTGGTTTTGAAGGCGCCCGG
GCGCACGCCGCTGCCGGCCGCGGTGGCGTTCGGCAGGGACTCGTTGTTCC
TCACGTTTCACGGCAACTTTCACTGCACTTGGTACGCGTGCTTGTGTCTG
ATGAACGCCGTGCTGCAGCTGGGGCGGCGCGCGCGCTCCAGGCCGGCGCG
CGCTGTGGAGAGGGTGGTGCATCGCTTCACCACGGTGCTGTTCCCGCTGT
CGGCGTTTGTGGGGCTTGCTTATTACCTCATTCTACACTTTCACCCCATG
AACCGACTGCGCGCGCTGCTGGTGCCGGACCACGACTCCAAGATGGCGTT
GCTGCACCTCAACCCGCTGCTGTTCGTGCTTGGCGATAGCCTGCTCAAGG
ACGCGGACCTTTTGGCAAAGTATGCTATCAAGCAGCGGCGCGCCGTGTTG
TTTATCAATGTTTACGGCCTGGGCTACTTCTTGTGGACGTTGTTCTGCAC
CAGGTTCAATGGCGGCCACTGGCCGTACCCGTTTCAGTACCGCTTCTCAC
CCGTGCAACACCTCATGTTCGTCGCCTTCGCTCTCACCTGTGGAACGTAT
CTCACGCGCACTGGCTTTCGAATTCACGCGCGATTGGATCGTCGACGGAG
GAGACGACACGTATGTGCCGAGAAGGATAGGTGCACGCGTCGCTCGTAG
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