Ggra6719.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6719.t1
Unique NameGgra6719.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length582
Homology
BLAST of Ggra6719.t1 vs. uniprot
Match: A0A2V3IJR0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJR0_9FLOR)

HSP 1 Score: 743 bits (1917), Expect = 6.060e-264
Identity = 391/579 (67.53%), Postives = 462/579 (79.79%), Query Frame = 0
Query:    1 MAAFVSPIRWGLTNSRRPWVSPHRPKRIFPRSCAELPKPPRPAEVRALITSKGKSDQQKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLSFEDDNVAMEAVRIMAELLATDEDYAVRAAAGAAMGYATELSPTAKSVLFDALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATVGALGDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCITKAKNEPSVIDALRTLSKDQSFAVREAADEGLKGFGCGNPVKEETRTDEELIEAEVSNLINGNESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPGSESSNDMEAYEKLVGDLKAGSPLAQVMAAIHLRKFDGHLAAEAALSCNVFDPKISTERLRAVCVGLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQNDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLSPGGVKDMRPPQDTVIHRHVVTALGFLGSRKALKRFEELIRAHDTDQSVRYRIAAALRGIHCEQSAALARLLIADENESVAEMAQGSLDALAQFGF 579
            MA+FV+PI     + + P VS HRP+R   RSCA++P+PPRPA+VRAL+TSKGK++QQKGLLLVRQLP +VAL+LL+L V+T++NEFIRSTAAISIGQL FED+ +A EAVR+M++LLATD DY+VRAAA AA+GYATEL    KS LFDAL RAL+ED+EWQV FSCLASLG  RD+RA+P+L KWL + NDLLVQA++GALGD+                              ++ AK EPSVIDALRTLSKDQSFAVR+AA E L+ FGC +PVK ETR+DEELIEAEVSNL+ G+E+GSAVESASDALRRRLERSFDKEY+   A           DM+AY KLV +LKAG+PL+QVMAAI LRK+DG LAAEA +S N  DP+ S+ERLRA+ VGLLA+GG++ERVI +LK DPDQNVRSACCDALLDLGGGP+A+   I+TF+NDSHWLVR+SAAITLGTIGKGNEEVE +LI+SL   GVK +  PQDTV+HRHVVTALGFLGS+KALK FEEL+   DT  +VRYRIAAALRGIHCE+S   ARLLI DE+ESVAEMAQGSLDALAQ  F
Sbjct:    1 MASFVTPIPCAFRSIQNPTVSRHRPRRPKLRSCAQIPEPPRPADVRALLTSKGKAEQQKGLLLVRQLPPQVALDLLKLSVETSDNEFIRSTAAISIGQLPFEDEALATEAVRVMSDLLATDNDYSVRAAAAAAVGYATELPEFGKSALFDALMRALLEDSEWQVHFSCLASLGSLRDERAIPVLRKWLDAKNDLLVQASIGALGDLGAISAVADLLQLLGSKDMMTRQRLAQALGQMSDAKKEPSVIDALRTLSKDQSFAVRDAALESLERFGCASPVKTETRSDEELIEAEVSNLMKGDEAGSAVESASDALRRRLERSFDKEYVQTDAHIGSVREAGLRDMDAYSKLVDELKAGNPLSQVMAAIQLRKYDGKLAAEAVVSSNALDPQTSSERLRAISVGLLARGGDMERVIDVLKTDPDQNVRSACCDALLDLGGGPSAIATCIETFENDSHWLVRISAAITLGTIGKGNEEVEDVLIQSLKANGVKGLNAPQDTVLHRHVVTALGFLGSKKALKSFEELLSNEDTGGAVRYRIAAALRGIHCEESIVFARLLIDDEDESVAEMAQGSLDALAQHDF 579          
BLAST of Ggra6719.t1 vs. uniprot
Match: R7QP05 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP05_CHOCR)

HSP 1 Score: 448 bits (1153), Expect = 4.030e-147
Identity = 267/574 (46.52%), Postives = 337/574 (58.71%), Query Frame = 0
Query:   31 RSCAELPKPP--RPAEVRALITSKGKSDQQKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLSFEDDNVAMEAVRIMAELLATDEDYAVRAAAGAAMGYATELSPTAKSVLFDALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATVGALGDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCITKAKNEPSVIDALRTLSKDQSFAVREAADEGLKGFGCGNPVKEETRTDEELIEAEVSNLINGNESGSAVESASDALRRRLERSFDKEYIH-PSAFKNVPGSESSNDMEA---------------------YEKLVGDLKAGSPLAQVMAAIHLRKFDGHLAAEAALSCNVFDPKISTERLRAVCVGLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQNDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLSPGGVKDMRPPQDTVIHRHVVTALGFLGSRKALKRFEELIRAHDTDQSVRYRIAAALRGIHCEQSAALARLLIADENESVAEMAQGSLDALAQFGFS 580
            R  AE P  P   P  +RALITS+GK+DQQ+GLLLVR+LP  VALELL L +QT+ NEFIRSTAAI+IGQL F D   A  AV                                                                +D+RAVPIL +W+ SDNDLLVQA++GA+GDI                              +  A++EPSVIDALR LSKDQSFAVR+AA E L  FGC    K ++ +D+E ++ EV+NL+ G+E  +   SAS+A+RRRLERSFDKEY+  P AF +V    +++  E+                     +E L+ DLK G  L Q MA I LRKFDG   ++A L   V D    +ER+R++CV LLA+GGEL  VIS+L  DPDQNVRSACCDA+ ++GGG   VEA ++ F+ D HWLVRVSAAI LG+IGKG    E  L+ SL PGGV+ +  PQD+V+ RH VTALGFLGS K L     L+   D+D ++RYRIA ALRGIHC++SAAL R L+ D +  V+ MAQG+LDALAQ+GFS
Sbjct:   94 RCVAEPPAEPPTSPDAIRALITSEGKADQQRGLLLVRKLPPAVALELLLLSIQTSTNEFIRSTAAITIGQLQFPDPATASAAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLKDERAVPILLRWMDSDNDLLVQASIGAMGDIGDLGVVPDLLKVLGSKDMMTRQRLAHSLGQMKDARHEPSVIDALRILSKDQSFAVRDAAKEALTDFGCMEAAKPDSMSDDERLDLEVANLLEGDEGRNVGASASEAMRRRLERSFDKEYVEDPDAFSSVAKRSNTSQDESEDDDREQNIVDPEVAKQSDAEFEDLMNDLKHGEHLDQTMAGIRLRKFDGKRVSKAVLEAGVLDASRFSERVRSLCVTLLARGGELWEVISVLMGDPDQNVRSACCDAIAEIGGGSVGVEACLKAFKTDKHWLVRVSAAIALGSIGKGFPNAEQELMDSLLPGGVEGLESPQDSVVRRHAVTALGFLGSEKCLPVIRALLNGEDSDTAIRYRIAGALRGIHCKESAALVRTLVHDGDNEVSGMAQGTLDALAQYGFS 667          
BLAST of Ggra6719.t1 vs. uniprot
Match: A0A7S2ZJB6 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB6_9RHOD)

HSP 1 Score: 181 bits (460), Expect = 2.190e-46
Identity = 174/552 (31.52%), Postives = 274/552 (49.64%), Query Frame = 0
Query:   44 EVRALITSKGKSDQQKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLSFEDDNVAMEAVRIMAELLATDE-DYAVRAAAGAAMGYATELSPTAKSVLFDALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATVGALGDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCITKAKNEPSVIDALRTLSKDQSFAVREAADEGLKGFGCGNPVKEETRTDEELIEAEVSNLINGNESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPGSESSNDME----------AYEKLVGDLKAGS-PLAQVMAAIHLRKFDGHLAAEAALSCNVF-DPKISTERLRAVCVGLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQNDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLS-PGGV---KDMRPPQDTVIHRHVVTALGFLGSRKALKRFEELIRAHDTDQSVRYRIAAALRGIHCEQSAALARLLIADENESVAEMAQGSLDALAQFG 578
            E   L+       ++K L L R L     LELL + +  +ENE + + A + + Q + ++     + V I+ + L+++E D  +R+AA   +G   EL        F+AL RA  E+TEW VQ++ LA+LG   D +A+P+L   L S+  +LVQ ++ +L   XXXXXXXXXXXXXX                 T   + P V+  LR ++  ++     AA+E L+          E   D +  +       NG +  +   S +  +R  LERSF++ +    A + +P +    + E           Y+ L   LK G+    + +AAI LR F   L  EA        DP   ++R+RA  + L++    +  + S+L  DPDQNVRS+ C AL++ G   A+V A+I  FQND+HW+VRVSAAI LG+    ++    +L  SL    GV   + ++PP    +  H +T+LGF+G+ +A+   + + R+ +    VR R AAAL  +   QS  +   L+ D++  V E A  S   L + G
Sbjct:   57 EAMTLMDMGTAESERKALTLSRNLSPTKELELLMIIMDKSENEIVEAAATVMLAQFARKNPESTDKCVEILCDRLSSNEYDLGIRSAAATGLG---ELKHEGS---FEALRRAFYEETEWAVQYAVLAALGNLGDTKALPLLIDALGSNIRMLVQRSINSLXXXXXXXXXXXXXXXXXKVDVVVEQSLAQALGSFT---SYPKVVTVLREMANSENPLTCFAAEEALQSA--------EVAQDPDTAQ-------NGGDKDAP--SMNYTIRELLERSFEQAHPSSRADRTLPLAHKEAEAEFQRMSPARQAEYKALCEQLKDGTIEDERAIAAIRLRSFPRGLKEEAVNQAGALNDP---SQRVRASVLNLVSHNPTV--LASVLLGDPDQNVRSSACSALVECGEMEASVLATIVAFQNDTHWIVRVSAAIALGSYAVNDKRAFDVLAESLCLKDGVPFAEGLKPPDALAVQCHAITSLGFVGNAEAVPLLDMMSRSSEV--KVRLRTAAALGFLADSQSLVILSRLVEDDDGEVVENAVASRARLLEEG 575          
BLAST of Ggra6719.t1 vs. uniprot
Match: A0A5J4Z773 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z773_PORPP)

HSP 1 Score: 110 bits (275), Expect = 8.390e-22
Identity = 134/536 (25.00%), Postives = 209/536 (38.99%), Query Frame = 0
Query:   58 QKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLSFEDDNVAMEAVRIMAELLATDEDYAVRAAAGAAMGYATELSPTAKSVLFDALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATVGALGDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--CITKA-----KNEPS--------------VIDALRTLSKDQSFAVREAADEGLKGFG-CGNPVKEETRT-DEELIEAEVSNLINGNESGSAVESASDALRRRLERSF----------DKEYIHPSAFKNVPGSE--------------------SSNDMEAYEKLVGDLKAGSPLAQVMAAIHLRKFDGHLAAEAALSCNVFDPKISTERLRAVCVGLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQNDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLSPGG--VKDMRPPQDTVIHRHVVTALGFLGSRKALKRFEELIRAHDTDQSVRYRIAA 538
            Q+GLLLVR++    AL+L++L +    +E +R+++ I +GQL   D+ V    + ++ +LL  D DY VR+AA A +GY  + S                                              L+S ND+LVQA VGALGDI                               C   A     + EPS               +D LR L++D+   V EAA E L   G  G    +  +   EE++E  +++++ G+     +++A D L R     F          DKE    S    +P  E                     ++D   Y+ L+  L+ G    + +AAI LR F   L   A L          +ER+RA    LL     L +  S+  +D +  VR+A  D +         + A I+   ND HWL R ++A  L     G    E  L++ ++       DM   Q   I R+ ++ALG L   +++     + RA   D+  R  +A+
Sbjct:   41 QEGLLLVREVGAVHALQLVKLALAHCTDEIVRASSTIMLGQLQGADEQVHRACLELLLKLLNRDPDYGVRSAAAAGLGYLGDASA------LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSPNDILVQAAVGALGDIVSFTRRPAGVLPALLQLGKTTKDVMTRQRLACALGAFASVEELEPSDETNPDTFKDLRASALDLLRRLAQDEHQFVVEAAVESLTRAGEDGQSFLDAMKPWSEEMLEKSINDMLMGD-----MKNARDHLERSFGNGFGSVDNDGISSDKEST-ASTGALIPNLERFGASFQLPTVELQALYDGLGASDASQYDALLEQLRTGDMSDKTLAAIRLRAFPPALGLHAVLDTGALQS--DSERVRAAVTPLLMSDPPLLK--SVAFSDSEPAVRAAALDVMSQGECSGDVLNACIEVLWNDPHWLPRATSATALALNAHGFRPAEEALLQCIAHPNEDFPDMTTSQTIAIRRYAISALGALEVERSVTPLRAMFRATSDDEMKRCILAS 560          
BLAST of Ggra6719.t1 vs. uniprot
Match: U5DPJ5 (HEAT domain containing protein n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DPJ5_9CHRO)

HSP 1 Score: 71.2 bits (173), Expect = 2.540e-10
Identity = 61/229 (26.64%), Postives = 111/229 (48.47%), Query Frame = 0
Query:  347 EKLVGDLKAGSPLAQVMAAIHLRKFDGHLAAEAALSCNVFDPKISTERLRAVCVGLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQNDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLSPGGVKDMRPPQDTVIHRHVVTALGFLGSRKALKRFEELIR-AHDTDQSVRYRIAAALRGIHCEQSAALARLLIADENESVAEMAQGSLDAL 574
            +++  DL++ +   +++A + LR+ D   AA   +   + D  +    +    +G+         +I +L+ DPD  +R+    AL  LG    A+   I+ F  D+ WLVR SAA+++G +   +   E +L         +D    ++ VI    + ALG +G+ +A+   E+++R A   D  VR R+  AL  +  E++ +  + L  DE+  VA+ A  SL  L
Sbjct:    7 KQVARDLESPNLRDRLLALVSLREVDSE-AAVPLIEKVLGDESLQVRSMAIFALGVKPTDRNFGLLIELLE-DPDYGIRADAAGALGYLGD-ERALTPLIRLFYEDTDWLVRFSAAVSIGNLRDCDPRAEAVL---------RDALNSEEVVIQHAAIAALGEIGAVEAV---EDILRFARSDDWLVRQRLTEALGNLPTEKTVSALKFLAKDEHPQVAQSAAISLRRL 220          
BLAST of Ggra6719.t1 vs. uniprot
Match: A0A7T5E4E1 (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E4E1_9CYAN)

HSP 1 Score: 58.9 bits (141), Expect = 3.550e-6
Identity = 52/165 (31.52%), Postives = 81/165 (49.09%), Query Frame = 0
Query:   42 PAEVRALITSKGKSDQQKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLSFEDDNVAMEAVRIMAELLATDEDYAVRAAAGAAMGYATELSPTAKSVLFDALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATVGALGDI 206
            P  VR L+ S+   D+ + +  +R+L    A +L QL      N  +R  A   +  L  + D   +E + + A  L  D +  V+AAA  A+G         +S   D L        EW VQFS +A+LG   + +A  +L + + SDNDL+V A +GALG++
Sbjct:    5 PDSVRELLHSEDYGDRLRAVNQLRELDLAAAFDLAQLAANDG-NARVRYAAISQLASLG-QQDLATVEPLLLRA--LTNDPEPDVQAAAADAIG-----GLQLRSAYAD-LAAVYHSTGEWLVQFSIIAALGELGEPQAFALLEEAVKSDNDLVVTAAIGALGEL 159          
The following BLAST results are available for this feature:
BLAST of Ggra6719.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IJR06.060e-26467.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QP054.030e-14746.52Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZJB62.190e-4631.52Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z7738.390e-2225.00Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
U5DPJ52.540e-1026.64HEAT domain containing protein n=1 Tax=Rubidibacte... [more]
A0A7T5E4E13.550e-631.52Uncharacterized protein n=2 Tax=Cyanobacteria TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004155PBS lyase HEAT-like repeatSMARTSM00567EZ_HEATcoord: 530..559
e-value: 68.0
score: 10.0
coord: 194..222
e-value: 37.0
score: 12.1
coord: 455..486
e-value: 23.0
score: 13.8
coord: 162..191
e-value: 12.0
score: 14.9
coord: 224..257
e-value: 130.0
score: 7.8
coord: 86..121
e-value: 61.0
score: 10.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 336..577
e-value: 8.0E-19
score: 69.7
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 40..332
e-value: 2.0E-27
score: 98.3
NoneNo IPR availablePFAMPF13646HEAT_2coord: 150..234
e-value: 3.4E-11
score: 43.4
NoneNo IPR availablePANTHERPTHR12697PBS LYASE HEAT-LIKE PROTEINcoord: 151..272
coord: 405..483
NoneNo IPR availablePANTHERPTHR12697:SF5DEOXYHYPUSINE HYDROXYLASEcoord: 151..272
coord: 405..483
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 72..575

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:283220..284965 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6719.t1Ggra6719.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 283220..284965 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6719.t1 ID=Ggra6719.t1|Name=Ggra6719.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=582bp
MAAFVSPIRWGLTNSRRPWVSPHRPKRIFPRSCAELPKPPRPAEVRALIT
SKGKSDQQKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLS
FEDDNVAMEAVRIMAELLATDEDYAVRAAAGAAMGYATELSPTAKSVLFD
ALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATV
GALGDIGDPTSIPELLKFLGSGDMMTRQRLAHALGCITKAKNEPSVIDAL
RTLSKDQSFAVREAADEGLKGFGCGNPVKEETRTDEELIEAEVSNLINGN
ESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPGSESSNDMEAYEKLV
GDLKAGSPLAQVMAAIHLRKFDGHLAAEAALSCNVFDPKISTERLRAVCV
GLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQ
NDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLSPGGVKDMRPPQDTVIH
RHVVTALGFLGSRKALKRFEELIRAHDTDQSVRYRIAAALRGIHCEQSAA
LARLLIADENESVAEMAQGSLDALAQFGFSY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004155PBS_lyase_HEAT
IPR011989ARM-like
IPR016024ARM-type_fold