Ggra6719.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6719.t1
Unique Name	Ggra6719.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	582

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:283220..284965 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	582515.KR51_00005020
PFAMs	HEAT_2,HEAT_PBS
Max annot lvl	1117\|Cyanobacteria
Evalue	1.93e-10
EggNOG OGs	COG1413@1\|root,COG1413@2\|Bacteria,1G0N6@1117\|Cyanobacteria
Description	PBS lyase HEAT-like repeat
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6719	Ggra6719	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 283220..284965 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6719.t1.stop1	Ggra6719.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 283220..283222 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6719.t1.CDS1	Ggra6719.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 283220..284965 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6719.t1.exon1	Ggra6719.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 283220..284965 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6719.t1.start1	Ggra6719.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 284963..284965 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6719.t1	Ggra6719.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 283220..284965 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:283220..284965-
coding sequence from alignment at tig00000056_pilon:283220..284965-

mRNA sequence

>Ggra6719.t1 ID=Ggra6719.t1|Name=Ggra6719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp
MAAFVSPIRWGLTNSRRPWVSPHRPKRIFPRSCAELPKPPRPAEVRALIT
SKGKSDQQKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLS
FEDDNVAMEAVRIMAELLATDEDYAVRAAAGAAMGYATELSPTAKSVLFD
ALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATV
GALGDIGDPTSIPELLKFLGSGDMMTRQRLAHALGCITKAKNEPSVIDAL
RTLSKDQSFAVREAADEGLKGFGCGNPVKEETRTDEELIEAEVSNLINGN
ESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPGSESSNDMEAYEKLV
GDLKAGSPLAQVMAAIHLRKFDGHLAAEAALSCNVFDPKISTERLRAVCV
GLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQ
NDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLSPGGVKDMRPPQDTVIH
RHVVTALGFLGSRKALKRFEELIRAHDTDQSVRYRIAAALRGIHCEQSAA
LARLLIADENESVAEMAQGSLDALAQFGFSY*

spliced messenger RNA

>Ggra6719.t1 ID=Ggra6719.t1|Name=Ggra6719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000056_pilon:283220..284965- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGTTTGTTTCTCCAATTCGGTGGGGCTTGACTAACTCACGAAG
GCCGTGGGTGAGCCCACATCGCCCAAAACGCATCTTTCCGCGTAGTTGCG
CTGAGCTGCCAAAACCTCCTCGTCCTGCAGAAGTTAGGGCTTTAATCACC
TCCAAGGGAAAATCAGACCAGCAAAAAGGCCTTCTTCTAGTGCGTCAACT
ACCAACGCGAGTAGCTCTTGAGTTGTTACAACTCTGCGTGCAGACTGCAG
AGAACGAGTTTATTCGGTCAACGGCTGCCATATCCATCGGTCAACTCTCG
TTTGAGGATGATAACGTGGCCATGGAAGCTGTGCGCATTATGGCTGAACT
TCTGGCCACAGACGAAGACTACGCTGTGCGTGCGGCAGCAGGTGCCGCCA
TGGGATACGCTACGGAATTGTCTCCAACAGCGAAATCCGTTTTGTTTGAT
GCTCTTACCCGCGCGCTAATAGAGGATACAGAATGGCAAGTTCAATTCAG
CTGCCTCGCCTCCTTGGGAGGTCAGCGCGACAAAAGAGCCGTGCCAATTT
TGCATAAATGGCTCGCTTCCGACAATGATCTCCTTGTTCAAGCGACGGTC
GGTGCTCTAGGAGATATCGGAGATCCAACTTCAATCCCAGAACTTCTTAA
GTTTTTGGGAAGTGGGGACATGATGACGAGGCAACGACTGGCACATGCAC
TTGGATGCATTACAAAAGCCAAGAACGAACCGTCAGTGATTGATGCCTTG
CGAACTCTGAGCAAGGATCAATCGTTTGCTGTTCGAGAAGCTGCTGACGA
AGGGTTGAAAGGTTTTGGATGTGGGAATCCAGTGAAAGAAGAAACGAGAA
CAGATGAAGAACTAATTGAAGCAGAAGTTAGCAATTTGATAAATGGCAAT
GAGTCTGGGTCAGCCGTTGAATCCGCTTCAGATGCATTGCGTAGACGTCT
GGAGCGCTCCTTCGACAAGGAATACATTCACCCGTCTGCGTTCAAGAACG
TCCCCGGCTCAGAGTCGTCCAACGATATGGAAGCATATGAGAAGCTAGTA
GGTGATCTAAAAGCTGGAAGCCCTCTGGCACAAGTAATGGCTGCGATTCA
CCTCAGGAAATTTGATGGACATCTGGCCGCGGAGGCTGCACTCTCGTGCA
ACGTTTTCGACCCAAAAATATCTACAGAACGATTGCGTGCGGTATGCGTC
GGTTTACTTGCGAAGGGCGGTGAGCTTGAACGAGTGATAAGCATACTGAA
GAATGACCCAGATCAAAATGTAAGAAGTGCTTGCTGTGATGCCCTTCTAG
ATCTCGGTGGAGGCCCTGCAGCAGTAGAGGCATCTATTCAAACTTTTCAG
AACGATTCACACTGGCTGGTGAGGGTTAGTGCTGCGATCACTCTTGGTAC
AATCGGGAAAGGAAATGAAGAAGTGGAAGGAATCCTTATACGCAGCCTGA
GCCCCGGCGGCGTGAAAGATATGCGTCCTCCACAGGACACTGTGATTCAT
CGACACGTAGTTACGGCTCTTGGATTTCTGGGTTCGCGAAAAGCTTTGAA
GCGTTTTGAGGAACTTATTCGTGCTCACGACACCGACCAATCGGTTCGGT
ATCGTATCGCTGCCGCGTTACGAGGCATTCATTGTGAACAAAGCGCTGCG
CTTGCGCGGTTGCTCATTGCAGACGAGAATGAATCGGTGGCAGAAATGGC
GCAGGGCAGTTTGGATGCACTTGCGCAGTTTGGCTTCAGCTATTAA

protein sequence of Ggra6719.t1

>Ggra6719.t1 ID=Ggra6719.t1|Name=Ggra6719.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=582bp
MAAFVSPIRWGLTNSRRPWVSPHRPKRIFPRSCAELPKPPRPAEVRALIT
SKGKSDQQKGLLLVRQLPTRVALELLQLCVQTAENEFIRSTAAISIGQLS
FEDDNVAMEAVRIMAELLATDEDYAVRAAAGAAMGYATELSPTAKSVLFD
ALTRALIEDTEWQVQFSCLASLGGQRDKRAVPILHKWLASDNDLLVQATV
GALGDIGDPTSIPELLKFLGSGDMMTRQRLAHALGCITKAKNEPSVIDAL
RTLSKDQSFAVREAADEGLKGFGCGNPVKEETRTDEELIEAEVSNLINGN
ESGSAVESASDALRRRLERSFDKEYIHPSAFKNVPGSESSNDMEAYEKLV
GDLKAGSPLAQVMAAIHLRKFDGHLAAEAALSCNVFDPKISTERLRAVCV
GLLAKGGELERVISILKNDPDQNVRSACCDALLDLGGGPAAVEASIQTFQ
NDSHWLVRVSAAITLGTIGKGNEEVEGILIRSLSPGGVKDMRPPQDTVIH
RHVVTALGFLGSRKALKRFEELIRAHDTDQSVRYRIAAALRGIHCEQSAA
LARLLIADENESVAEMAQGSLDALAQFGFSY*

mRNA from alignment at tig00000056_pilon:283220..284965-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6719.t1 ID=Ggra6719.t1|Name=Ggra6719.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000056_pilon:283220..284965- (Gracilaria gracilis GNS1m male)
ATGGCTGCGTTTGTTTCTCCAATTCGGTGGGGCTTGACTAACTCACGAAG
GCCGTGGGTGAGCCCACATCGCCCAAAACGCATCTTTCCGCGTAGTTGCG
CTGAGCTGCCAAAACCTCCTCGTCCTGCAGAAGTTAGGGCTTTAATCACC
TCCAAGGGAAAATCAGACCAGCAAAAAGGCCTTCTTCTAGTGCGTCAACT
ACCAACGCGAGTAGCTCTTGAGTTGTTACAACTCTGCGTGCAGACTGCAG
AGAACGAGTTTATTCGGTCAACGGCTGCCATATCCATCGGTCAACTCTCG
TTTGAGGATGATAACGTGGCCATGGAAGCTGTGCGCATTATGGCTGAACT
TCTGGCCACAGACGAAGACTACGCTGTGCGTGCGGCAGCAGGTGCCGCCA
TGGGATACGCTACGGAATTGTCTCCAACAGCGAAATCCGTTTTGTTTGAT
GCTCTTACCCGCGCGCTAATAGAGGATACAGAATGGCAAGTTCAATTCAG
CTGCCTCGCCTCCTTGGGAGGTCAGCGCGACAAAAGAGCCGTGCCAATTT
TGCATAAATGGCTCGCTTCCGACAATGATCTCCTTGTTCAAGCGACGGTC
GGTGCTCTAGGAGATATCGGAGATCCAACTTCAATCCCAGAACTTCTTAA
GTTTTTGGGAAGTGGGGACATGATGACGAGGCAACGACTGGCACATGCAC
TTGGATGCATTACAAAAGCCAAGAACGAACCGTCAGTGATTGATGCCTTG
CGAACTCTGAGCAAGGATCAATCGTTTGCTGTTCGAGAAGCTGCTGACGA
AGGGTTGAAAGGTTTTGGATGTGGGAATCCAGTGAAAGAAGAAACGAGAA
CAGATGAAGAACTAATTGAAGCAGAAGTTAGCAATTTGATAAATGGCAAT
GAGTCTGGGTCAGCCGTTGAATCCGCTTCAGATGCATTGCGTAGACGTCT
GGAGCGCTCCTTCGACAAGGAATACATTCACCCGTCTGCGTTCAAGAACG
TCCCCGGCTCAGAGTCGTCCAACGATATGGAAGCATATGAGAAGCTAGTA
GGTGATCTAAAAGCTGGAAGCCCTCTGGCACAAGTAATGGCTGCGATTCA
CCTCAGGAAATTTGATGGACATCTGGCCGCGGAGGCTGCACTCTCGTGCA
ACGTTTTCGACCCAAAAATATCTACAGAACGATTGCGTGCGGTATGCGTC
GGTTTACTTGCGAAGGGCGGTGAGCTTGAACGAGTGATAAGCATACTGAA
GAATGACCCAGATCAAAATGTAAGAAGTGCTTGCTGTGATGCCCTTCTAG
ATCTCGGTGGAGGCCCTGCAGCAGTAGAGGCATCTATTCAAACTTTTCAG
AACGATTCACACTGGCTGGTGAGGGTTAGTGCTGCGATCACTCTTGGTAC
AATCGGGAAAGGAAATGAAGAAGTGGAAGGAATCCTTATACGCAGCCTGA
GCCCCGGCGGCGTGAAAGATATGCGTCCTCCACAGGACACTGTGATTCAT
CGACACGTAGTTACGGCTCTTGGATTTCTGGGTTCGCGAAAAGCTTTGAA
GCGTTTTGAGGAACTTATTCGTGCTCACGACACCGACCAATCGGTTCGGT
ATCGTATCGCTGCCGCGTTACGAGGCATTCATTGTGAACAAAGCGCTGCG
CTTGCGCGGTTGCTCATTGCAGACGAGAATGAATCGGTGGCAGAAATGGC
GCAGGGCAGTTTGGATGCACTTGCGCAGTTTGGCTTCAGCTATTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:283220..284965-

>Ggra6719.t1 ID=Ggra6719.t1|Name=Ggra6719.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1746bp|location=Sequence derived from alignment at tig00000056_pilon:283220..284965- (Gracilaria gracilis GNS1m male)
ATGGCTGCGTTTGTTTCTCCAATTCGGTGGGGCTTGACTAACTCACGAAG
GCCGTGGGTGAGCCCACATCGCCCAAAACGCATCTTTCCGCGTAGTTGCG
CTGAGCTGCCAAAACCTCCTCGTCCTGCAGAAGTTAGGGCTTTAATCACC
TCCAAGGGAAAATCAGACCAGCAAAAAGGCCTTCTTCTAGTGCGTCAACT
ACCAACGCGAGTAGCTCTTGAGTTGTTACAACTCTGCGTGCAGACTGCAG
AGAACGAGTTTATTCGGTCAACGGCTGCCATATCCATCGGTCAACTCTCG
TTTGAGGATGATAACGTGGCCATGGAAGCTGTGCGCATTATGGCTGAACT
TCTGGCCACAGACGAAGACTACGCTGTGCGTGCGGCAGCAGGTGCCGCCA
TGGGATACGCTACGGAATTGTCTCCAACAGCGAAATCCGTTTTGTTTGAT
GCTCTTACCCGCGCGCTAATAGAGGATACAGAATGGCAAGTTCAATTCAG
CTGCCTCGCCTCCTTGGGAGGTCAGCGCGACAAAAGAGCCGTGCCAATTT
TGCATAAATGGCTCGCTTCCGACAATGATCTCCTTGTTCAAGCGACGGTC
GGTGCTCTAGGAGATATCGGAGATCCAACTTCAATCCCAGAACTTCTTAA
GTTTTTGGGAAGTGGGGACATGATGACGAGGCAACGACTGGCACATGCAC
TTGGATGCATTACAAAAGCCAAGAACGAACCGTCAGTGATTGATGCCTTG
CGAACTCTGAGCAAGGATCAATCGTTTGCTGTTCGAGAAGCTGCTGACGA
AGGGTTGAAAGGTTTTGGATGTGGGAATCCAGTGAAAGAAGAAACGAGAA
CAGATGAAGAACTAATTGAAGCAGAAGTTAGCAATTTGATAAATGGCAAT
GAGTCTGGGTCAGCCGTTGAATCCGCTTCAGATGCATTGCGTAGACGTCT
GGAGCGCTCCTTCGACAAGGAATACATTCACCCGTCTGCGTTCAAGAACG
TCCCCGGCTCAGAGTCGTCCAACGATATGGAAGCATATGAGAAGCTAGTA
GGTGATCTAAAAGCTGGAAGCCCTCTGGCACAAGTAATGGCTGCGATTCA
CCTCAGGAAATTTGATGGACATCTGGCCGCGGAGGCTGCACTCTCGTGCA
ACGTTTTCGACCCAAAAATATCTACAGAACGATTGCGTGCGGTATGCGTC
GGTTTACTTGCGAAGGGCGGTGAGCTTGAACGAGTGATAAGCATACTGAA
GAATGACCCAGATCAAAATGTAAGAAGTGCTTGCTGTGATGCCCTTCTAG
ATCTCGGTGGAGGCCCTGCAGCAGTAGAGGCATCTATTCAAACTTTTCAG
AACGATTCACACTGGCTGGTGAGGGTTAGTGCTGCGATCACTCTTGGTAC
AATCGGGAAAGGAAATGAAGAAGTGGAAGGAATCCTTATACGCAGCCTGA
GCCCCGGCGGCGTGAAAGATATGCGTCCTCCACAGGACACTGTGATTCAT
CGACACGTAGTTACGGCTCTTGGATTTCTGGGTTCGCGAAAAGCTTTGAA
GCGTTTTGAGGAACTTATTCGTGCTCACGACACCGACCAATCGGTTCGGT
ATCGTATCGCTGCCGCGTTACGAGGCATTCATTGTGAACAAAGCGCTGCG
CTTGCGCGGTTGCTCATTGCAGACGAGAATGAATCGGTGGCAGAAATGGC
GCAGGGCAGTTTGGATGCACTTGCGCAGTTTGGCTTCAGCTATTAA