Ggra6709.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6709.t1
Unique NameGgra6709.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Homology
BLAST of Ggra6709.t1 vs. uniprot
Match: A0A2V3IJR3 (U1-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJR3_9FLOR)

HSP 1 Score: 176 bits (446), Expect = 4.090e-52
Identity = 109/218 (50.00%), Postives = 147/218 (67.43%), Query Frame = 0
Query:    1 MPPKTKQSRRPQTQTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLREIAERNEKERAQARREGRRIEGDKGNLAVQQMMEIAMQATEVKIKKSEAEEED-DKEEEVILGQEVDENGYPLPANAVFQWTTVGEEEANESQSEEPNAEGLGQVDTQEEQSNTELFDKGEASGVKRLLESEETVAAADE----GAEERSAALATFKKRKSVSGRKKRR 213
            M PK KQ R+  TQ LC+ICNIWIADNK QRDQHESGAKHIANRQ+LLR+IAE+NEK RA+AR+EGR  EG  G+ AVQ++MEIA+QAT+ KI   E E+ D DK +     Q+VDE GYP  AN++F+W  V +E   ++  +E      G+++   +++        + +GVKR L  E  V++  E     A+ER+ AL++FKKR   +GRK+RR
Sbjct:    1 MAPKAKQRRQETTQHLCRICNIWIADNKLQRDQHESGAKHIANRQKLLRQIAEKNEKARAEARKEGRSTEG--GSRAVQELMEIALQATQGKI--LEPEKTDIDKSDVEQSDQQVDEKGYPTAANSLFEWIAVADENDGDTNGQEXXXXXXGRLEQSAQEAELHHVITQQVAGVKRTLGREPVVSSVKEEDKEDAQERTDALSSFKKRPPAAGRKRRR 214          
BLAST of Ggra6709.t1 vs. uniprot
Match: R7QPY9 (zf-U1 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPY9_CHOCR)

HSP 1 Score: 72.4 bits (176), Expect = 7.140e-12
Identity = 72/232 (31.03%), Postives = 115/232 (49.57%), Query Frame = 0
Query:    1 MPPKTKQSRRPQTQTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLREIAERNEKERAQARRE-----GRRIEGDKGNLAV---QQMMEIAMQATEVKI--KKSEAEEEDD--------------KEEEVILGQEVDENGYPLPANAVF-QWTTVGEEEANESQSEEPNAEGLGQVDTQEEQSNTELFDKGEASGVKR----LLESEETVAAADEGAEERSAALATFKKR 203
            MP K   +R+     LCKICNIWIADNK QR QHE  +KH   R  LL+ IA++NE++  + +R+     G+      G  A    QQ++E    A+  +   +KS     DD              +E   +  + +DENG+PLPA+A++ QW +  E E NE  ++  +    G+ +   +++N E  D G+    ++     +E   + +  DEG  E ++    FK+R
Sbjct:    1 MPKKPYANRK-----LCKICNIWIADNKIQRLQHEEASKHKQARAALLKSIADKNERKAKEQKRDAALAAGKTAPATGGTNAATVTQQLLEKVASASSRRAASEKSRKRPRDDSHGASSDIKTDARSQENGQLQDEALDENGFPLPASAMYGQWQSA-EVEINEQGADSVHLY-WGEANAPSQENNDE--DNGDLPNQEQPTVETVEESVSKSTKDEGKGEENSLGVVFKRR 223          
BLAST of Ggra6709.t1 vs. uniprot
Match: Q55HM5 (Matrin-type domain-containing protein n=2 Tax=Cryptococcus neoformans var. neoformans TaxID=40410 RepID=Q55HM5_CRYNB)

HSP 1 Score: 58.2 bits (139), Expect = 1.810e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:   14 QTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLREI---AERNEKERAQARREGRRIE 70
            Q  CK CNIWI D+ P R QHE+G KHI N++R +R++    E+ +KE+AQ   E  RI+
Sbjct:   10 QYWCKYCNIWIRDDAPSRRQHETGLKHIGNKERFIRDLYRGGEKAKKEKAQEAAEMARID 69          
BLAST of Ggra6709.t1 vs. uniprot
Match: J9VYT3 (Matrin-type domain-containing protein n=3 Tax=Cryptococcus neoformans var. grubii TaxID=178876 RepID=J9VYT3_CRYNH)

HSP 1 Score: 58.2 bits (139), Expect = 1.810e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:   14 QTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLREI---AERNEKERAQARREGRRIE 70
            Q  CK CNIWI D+ P R QHE+G KHI N++R +R++    E+ +KE+AQ   E  RI+
Sbjct:   10 QYWCKYCNIWIRDDAPSRRQHETGLKHIGNKERFIRDLYRGGEKAKKEKAQEAAEMARID 69          
BLAST of Ggra6709.t1 vs. uniprot
Match: E6RFZ6 (Matrin-type domain-containing protein n=5 Tax=Cryptococcus gattii species complex TaxID=1884637 RepID=E6RFZ6_CRYGW)

HSP 1 Score: 58.2 bits (139), Expect = 1.810e-6
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:   14 QTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLREI---AERNEKERAQARREGRRIE 70
            Q  CK CNIWI D+ P R QHE+G KHI N++R +R++    E+ +KE+AQ   E  RI+
Sbjct:   10 QYWCKYCNIWIRDDAPSRRQHETGLKHIGNKERFIRDLYRGGEKAKKEKAQEAAEMARID 69          
BLAST of Ggra6709.t1 vs. uniprot
Match: A0A4Q1BES6 (Matrin-type domain-containing protein n=2 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BES6_TREME)

HSP 1 Score: 56.2 bits (134), Expect = 7.290e-6
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 0
Query:   17 CKICNIWIADNKPQRDQHESGAKHIANRQRLLREI 51
            CK CNIWI D+ P R QHE+G KHI NR+R +R+I
Sbjct:   13 CKYCNIWIRDDAPSRKQHETGLKHIGNRERYIRDI 47          
The following BLAST results are available for this feature:
BLAST of Ggra6709.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IJR34.090e-5250.00U1-type domain-containing protein n=1 Tax=Gracilar... [more]
R7QPY97.140e-1231.03zf-U1 domain-containing protein n=1 Tax=Chondrus c... [more]
Q55HM51.810e-648.33Matrin-type domain-containing protein n=2 Tax=Cryp... [more]
J9VYT31.810e-648.33Matrin-type domain-containing protein n=3 Tax=Cryp... [more]
E6RFZ61.810e-648.33Matrin-type domain-containing protein n=5 Tax=Cryp... [more]
A0A4Q1BES67.290e-662.86Matrin-type domain-containing protein n=2 Tax=Trem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 86..106
NoneNo IPR availableCOILSCoilCoilcoord: 45..65
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 13..65
e-value: 2.0E-7
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..173
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..159
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 12..47
e-value: 1.8E-5
score: 34.2
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 16..46
e-value: 2.2E-6
score: 27.4
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 16..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:260453..261100 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6709.t1Ggra6709.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 260453..261100 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6709.t1 ID=Ggra6709.t1|Name=Ggra6709.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MPPKTKQSRRPQTQTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLRE
IAERNEKERAQARREGRRIEGDKGNLAVQQMMEIAMQATEVKIKKSEAEE
EDDKEEEVILGQEVDENGYPLPANAVFQWTTVGEEEANESQSEEPNAEGL
GQVDTQEEQSNTELFDKGEASGVKRLLESEETVAAADEGAEERSAALATF
KKRKSVSGRKKRRRH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR013085U1-CZ_Znf_C2H2
IPR036236Znf_C2H2_sf