Ggra6709.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6709.t1
Unique NameGgra6709.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:260453..261100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog552467.XP_003197508.1
PFAMszf-U1
Max annot lvl4751|Fungi
KEGG rclassRC00001
KEGG koko:K00354,ko:K13220
KEGG ReactionR00282
GOsGO:0000375,GO:0000377,GO:0000398,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0045292,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue2.55e-06
EggNOG OGsKOG0150@1|root,KOG0150@2759|Eukaryota,38EER@33154|Opisthokonta,3P2UA@4751|Fungi,3V21J@5204|Basidiomycota,3VFIC@5234|Tremellales
EC1.6.99.1
DescriptionU1 zinc finger
COG categoryK
BRITEko00000,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6709Ggra6709Gracilaria gracilis GNS1m malegenetig00000056_pilon 260453..261100 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6709.t1.start1Ggra6709.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 260453..260455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6709.t1.CDS1Ggra6709.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 260453..261100 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6709.t1.exon1Ggra6709.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 260453..261100 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6709.t1.stop1Ggra6709.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 261098..261100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6709.t1Ggra6709.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 260453..261100 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6709.t1 ID=Ggra6709.t1|Name=Ggra6709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp
MPPKTKQSRRPQTQTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLRE
IAERNEKERAQARREGRRIEGDKGNLAVQQMMEIAMQATEVKIKKSEAEE
EDDKEEEVILGQEVDENGYPLPANAVFQWTTVGEEEANESQSEEPNAEGL
GQVDTQEEQSNTELFDKGEASGVKRLLESEETVAAADEGAEERSAALATF
KKRKSVSGRKKRRRH*
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spliced messenger RNA

>Ggra6709.t1 ID=Ggra6709.t1|Name=Ggra6709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000056_pilon:260453..261100+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCAAAAACGAAACAAAGTCGGCGACCGCAAACGCAGACACTATG
TAAAATATGCAACATATGGATAGCAGACAACAAGCCTCAAAGGGATCAGC
ACGAATCAGGGGCAAAGCACATTGCAAACCGTCAACGCCTGTTACGCGAA
ATAGCTGAACGAAACGAAAAGGAACGAGCTCAGGCAAGAAGAGAAGGAAG
GCGCATAGAAGGTGACAAGGGAAACCTGGCAGTGCAGCAAATGATGGAAA
TTGCGATGCAAGCGACagaagtgaagattaaaaagtcagaagcagaagaa
gaggatgataaagaagaagaagTTATTCTTGGACAAGAAGTGGACGAAAA
TGGATATCCTTTGCCTGCCAATGCTGTGTTTCAATGGACTACTGTCGGTG
AGGAGGAAGCGAATGAATCGCAAAGCGAAGAACCGAATGCGGAGGGCTTG
GGACAGGTAGATACACAGGAAGAACAAAGTAATACTGAGCTTTTTGACAA
GGGGGAGGCTTCAGGTGTGAAACGATTACTCGAAAGTGAGGAGACGGTAG
CAGCAGCGGATGAAGGTGCCGAAGAACGTTCCGCAGCGCTTGCAACATTC
AAGAAAAGAAAATCTGTATCCGGGCGGAAGAAGCGAAGAAGGCATTGA
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protein sequence of Ggra6709.t1

>Ggra6709.t1 ID=Ggra6709.t1|Name=Ggra6709.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=216bp
MPPKTKQSRRPQTQTLCKICNIWIADNKPQRDQHESGAKHIANRQRLLRE
IAERNEKERAQARREGRRIEGDKGNLAVQQMMEIAMQATEVKIKKSEAEE
EDDKEEEVILGQEVDENGYPLPANAVFQWTTVGEEEANESQSEEPNAEGL
GQVDTQEEQSNTELFDKGEASGVKRLLESEETVAAADEGAEERSAALATF
KKRKSVSGRKKRRRH*
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mRNA from alignment at tig00000056_pilon:260453..261100+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6709.t1 ID=Ggra6709.t1|Name=Ggra6709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=648bp|location=Sequence derived from alignment at tig00000056_pilon:260453..261100+ (Gracilaria gracilis GNS1m male)
ATGCCACCAAAAACGAAACAAAGTCGGCGACCGCAAACGCAGACACTATG
TAAAATATGCAACATATGGATAGCAGACAACAAGCCTCAAAGGGATCAGC
ACGAATCAGGGGCAAAGCACATTGCAAACCGTCAACGCCTGTTACGCGAA
ATAGCTGAACGAAACGAAAAGGAACGAGCTCAGGCAAGAAGAGAAGGAAG
GCGCATAGAAGGTGACAAGGGAAACCTGGCAGTGCAGCAAATGATGGAAA
TTGCGATGCAAGCGACagaagtgaagattaaaaagtcagaagcagaagaa
gaggatgataaagaagaagaagTTATTCTTGGACAAGAAGTGGACGAAAA
TGGATATCCTTTGCCTGCCAATGCTGTGTTTCAATGGACTACTGTCGGTG
AGGAGGAAGCGAATGAATCGCAAAGCGAAGAACCGAATGCGGAGGGCTTG
GGACAGGTAGATACACAGGAAGAACAAAGTAATACTGAGCTTTTTGACAA
GGGGGAGGCTTCAGGTGTGAAACGATTACTCGAAAGTGAGGAGACGGTAG
CAGCAGCGGATGAAGGTGCCGAAGAACGTTCCGCAGCGCTTGCAACATTC
AAGAAAAGAAAATCTGTATCCGGGCGGAAGAAGCGAAGAAGGCATTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:260453..261100+

>Ggra6709.t1 ID=Ggra6709.t1|Name=Ggra6709.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=648bp|location=Sequence derived from alignment at tig00000056_pilon:260453..261100+ (Gracilaria gracilis GNS1m male)
ATGCCACCAAAAACGAAACAAAGTCGGCGACCGCAAACGCAGACACTATG
TAAAATATGCAACATATGGATAGCAGACAACAAGCCTCAAAGGGATCAGC
ACGAATCAGGGGCAAAGCACATTGCAAACCGTCAACGCCTGTTACGCGAA
ATAGCTGAACGAAACGAAAAGGAACGAGCTCAGGCAAGAAGAGAAGGAAG
GCGCATAGAAGGTGACAAGGGAAACCTGGCAGTGCAGCAAATGATGGAAA
TTGCGATGCAAGCGACagaagtgaagattaaaaagtcagaagcagaagaa
gaggatgataaagaagaagaagTTATTCTTGGACAAGAAGTGGACGAAAA
TGGATATCCTTTGCCTGCCAATGCTGTGTTTCAATGGACTACTGTCGGTG
AGGAGGAAGCGAATGAATCGCAAAGCGAAGAACCGAATGCGGAGGGCTTG
GGACAGGTAGATACACAGGAAGAACAAAGTAATACTGAGCTTTTTGACAA
GGGGGAGGCTTCAGGTGTGAAACGATTACTCGAAAGTGAGGAGACGGTAG
CAGCAGCGGATGAAGGTGCCGAAGAACGTTCCGCAGCGCTTGCAACATTC
AAGAAAAGAAAATCTGTATCCGGGCGGAAGAAGCGAAGAAGGCATTGA
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