Ggra6704.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6704.t1
Unique NameGgra6704.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length810
Homology
BLAST of Ggra6704.t1 vs. uniprot
Match: R7QPU3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPU3_CHOCR)

HSP 1 Score: 475 bits (1223), Expect = 1.170e-155
Identity = 267/576 (46.35%), Postives = 377/576 (65.45%), Query Frame = 0
Query:  237 IIDYLKVDLTTPSKPLDLQNGLAYNVTRCVANLARDTVTHDSLLETSLLRNLCDMLRQFSPDDLEKDELQ-SETARHTILAVSALSKSAAQPVIRSSAHKALIIFAQCE-DAVAQTYSCGGLRNLARHSHLQDHEDIS-KVHRELVVSNVADALSNGM-KAASAQTKVFCALAFGDLMSTPHPKADLIRRRLEPAYEAFSELLADKNAAISRVISRVIVTIFGD-----ETGNSVV--PEKLAKLIANESGQLVNGGVARGDRAALSAVRAMCNDQIVAKEMVDKGLLEVLVLGVRKGNPDFMQQCTAALSSLSAWGDLSQLVVSRGALTAVLRRPSMEQDARYVAAFLANLARKADLQVEIAHGGMRTLLIALASKNESARKEAARALYNLSLGGVTKVMVAQSGALLPLVKVVSTSTGDARRYAVSVLTDISSAPERATTFAEANVIGSLLKAVEDDHMLSCDVARCISQLSQVAEVHGLLVKSGAVPWLVNIISRNGGRGERAGDTMLYCMIAVNNIAFSPGITREALRKSGAVPLLKSLSSSGMSGPMVLMGAKQALQNIRG-EKAALLPAE 800
            ++DYL   L+TP    DL  G++Y+  RC +NLAR+++TH  LL+  LL  LCD LR          + Q +E    TILAV+AL+KSA   V+    HK L+ F + + ++VAQ Y+ GG+RNLARH    D    + +VHRELVV+   DAL  GM K AS QT+ F  LAFGDLM+T H KA +IRR LEPA+  F+ L+ +KNA I+R + R +  +FG        G + V  P  L  L+A ESGQ++NG VARGD  AL AV AMC D+ +A+ MVD+GLLEVLV G  KG  ++ ++  AAL  L+ W  +  L+  RGAL A+L RP ++ D R+   FLAN+A+  + QVE+A GG++ L ++L SK+E+AR++AARA YNLSLGGV++VM+ QSG L PLV+  S+S GD RR+A++ L  IS + E      EA+ I  +L+A ++D  ++ D A CI+ +SQ+ E HG L +SGA  WLV ++S+NGGRG  A +TM Y  + + N+A+S G+TR ALR++GA+ +L ++S+S M  P   M +KQAL+N++G EK  +LP +
Sbjct:    1 MVDYL-AGLSTPPTQTDLGAGISYHAVRCASNLARNSLTHAHLLDAGLLPLLCDALRTADVSHFAAADHQLTELVLCTILAVAALAKSAPSDVVAGGGHKRLLYFMKEQHESVAQMYAAGGIRNLARHG---DRTVANWRVHRELVVNGAVDALRAGMAKEASPQTRTFSVLAFGDLMTTGHHKAAIIRRWLEPAFRDFANLVNEKNAGIARTVYRTLTALFGGGGTDKRNGETPVLAPPALCALLAKESGQIINGPVARGDLPALKAVHAMCRDETLAQGMVDQGLLEVLVRGASKGKGEYWEESVAALGILAGWEKVQPLMAPRGALKAILARPCLKHDGRWTVQFLANMAKSGNHQVEVARGGLKVLSLSLVSKDEAARRDAARAFYNLSLGGVSRVMLGQSGILGPLVRTASSSVGDTRRFAIATLAKISESMEHTIKLVEADTISVMLQAAKEDSRIAKDAAFCIATMSQMVEAHGSLARSGAAAWLVEMLSKNGGRGPDAAETMQYAALGICNLAYSAGVTRNALRENGALSVLTAISASTMGAPQTAMISKQALRNLKGNEKPGMLPVQ 572          
BLAST of Ggra6704.t1 vs. uniprot
Match: A0A7S0BPX2 (Vacuolar protein 8 n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BPX2_9RHOD)

HSP 1 Score: 172 bits (437), Expect = 2.680e-41
Identity = 167/678 (24.63%), Postives = 314/678 (46.31%), Query Frame = 0
Query:  149 ELPLRLNVVRLLADLAKQNESHDFFMKADIVSILDRIVAESAAGMRQGWMEWFYRYFSFESTKETES-----PSNLAKEGNTPFTELSPPGDAIIDYLKVDLTTPSKPLDLQNGLAYNVTRCVANLARDTVTHDSLLETSLLRNLCDMLRQFSPDDLEKDELQSETARHTILAVSALSKSAAQPVIRSSAHKALIIFAQCE--DAVAQTYSCGGLRNLARHSHLQDHEDISKVHRELVVSNVADALSNGMKAA-SAQTKVFCALAFGDLMSTPHPKADLIRRRLEPA--YEAFSELLADKNAAISRVISRVIVTIFG-----DETGNSVVPEKLAKLIANESGQLVNGGVARGDRAALSAVRAMCNDQIVAKEMVDKGLLEVLVLGVRKGNPDFMQQCTAALSSLSAWGDLSQLVVSRGALTAVLRRPSMEQDARY-VAAFLANLARKADLQVEIAHGGMRTLLIALASK---NESARKEAARALYNLSLGGVTKVMVAQSGALLPLVKVVSTSTGDARRYAVSVLTDISSAPERATTFAEANVIGSLLKAVEDDHMLSCDVARCISQLSQVAEVHGLLVKSGAVPWLVNIISRNGGRGERAGDTMLYCMIAVNNIAFSPGITREALRKSGAVPLLKSLSSSGMSGPMVLMGAKQALQNI-RGEKAAL--LPAENVTP 804
            +LP  L+VV L   LA +N  +D +++  I+ ++ R+  + AA ++      F +  + +S  E        P +        F  L   G    D  ++   TP   L     L+   ++ +AN+A+  + +   ++ + + NLC+ + + S +         ET R+ +L ++ +      P    +  + ++ F   E  D V+Q Y+ GGLRN+ ++S          +H+ LV+     AL N +  +   + +   A A  DL ++ + +A++IR R+  +  +EA   +L   N  + R  S+ I  I       D     +V +     +  +  +L  G +     AA S +  +     +++  ++ G   V++      +P    +   AL+ +S   + +  +V  G L  VL   S      Y +   LANL RK +L+ E+AH G   LL A+ +    +E  +KEA R L+NLS+ G+++VMV Q G+LLPL++ V     + +  AV  L+++    E +    E   +  L+   ++D  L C    C+ + + + E+H  +V+ G V    N+I     R  R+ + ++Y ++ + N+A S  + RE +R++GA+ LL S++ + +    +   A+  L N+ +GEK  +  LPA    P
Sbjct:  105 DLPAELSVV-LKTLLASENVDYDIYIR--ILKVISRLSEKQAAALK------FLKTDAVDSIYEVLKDVVGWPWDSGNYAKKMFHRLFLGGT---DNTRLAEKTPQGVL-----LSELCSKILANIAKVALDYHPFVKDNRI-NLCNRMIKLSEN--------VETRRNMLLILACIVSKEGFPEDSGTTLQNILEFVSAENPDPVSQWYATGGLRNMCKNS---------SMHKNLVLKGAIPALVNVLLTSPEPKAQALAASAVADLSTSAYARAEVIRVRMVDSLTFEALGRVLKSSNQGVLRSTSKAIDAILSGVPLNDRARQPIVDQFKKAGVPGQITRLSLGRLPPVVSAATSCLYTLAAIDGLSEPALEAGAARVIIGACNSFDPGMASRALDALAQMSESSERADYLVQAGVLRVVLAIRSTNPVITYPLTILLANLTRKEELRAEVAHEGGLVLLNAMLTSGNIDEGTKKEALRVLHNLSVSGLSRVMVVQYGSLLPLIENVKHENAEMKLLAVKTLSNLMEGLESSMKAFETGGLAPLIACGKEDGELGCRAVLCVGEFTNLQELHSEIVRQGGVELFANVI-----RAGRSSEAVVYAVLGLCNLAASE-VARERIREAGAIGLLNSVAHTMLYSGEIAAVAEAGLANLQKGEKTMIQVLPASPSKP 741          
BLAST of Ggra6704.t1 vs. uniprot
Match: M1V7Q9 (Vacuolar protein 8 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7Q9_CYAM1)

HSP 1 Score: 67.8 bits (164), Expect = 7.140e-8
Identity = 75/280 (26.79%), Postives = 134/280 (47.86%), Query Frame = 0
Query:  535 LSSLSAWGDLSQLVVSRG---ALTAVLR-RPSME-QDARYVAAFLANLARKADLQVEI--AHGGMRTL-----LIALAS----------KNESARKEAARALYNLSLGGVTKVMVAQSGALLPLVKVVSTSTGDARRYAVSVLTDISSAPERATTFAEANVIGSLLKAVED---DHMLSCDVARCISQLSQVAEVHGLLVKSGAVPWLVNIISRNGGRGERAGDTMLYCMIAVNNIAFSPGITREALRKSGAVPLLKSLSSSGMSGPMVLMGAKQALQNI 789
            +  LS   D   L+ ++G   AL  +L+ R S+   +A+ +   +ANL+R  + ++++  + G +R L     L A AS           N+S R+E ARAL+N+S GG+++VM AQ+G +   V++ +      RRY V  L+  +   E +   A+AN +  L  AV     D   +      +++L+   ++H  L+K GA  +     +++        ++  Y + A+ N++ +P   R  L+  G   LL  L+ S    P + M A   + NI
Sbjct:  585 IGQLSEDSDTLYLLANQGLCQALYGILQGRLSLSTNEAQILVHTIANLSRIDNAKLDLLGSRGALRILMKLPTLWAQASGNQVQAEVIGNNDSLRRELARALFNVSTGGLSRVMAAQAGGVEAAVRLATDPDPSVRRYGVRALSLFAEQIENSIRIAQANGLPVLASAVAQRRTDPETARAALLALAELTNNVDLHPHLLKLGAGTYFAQYATQSVDI-----ESQQYALAALCNLSATP-TGRATLQSLGVHRLLSGLALSAAVPPELAMLANMVVANI 858          
BLAST of Ggra6704.t1 vs. uniprot
Match: A0A7J7IRV8 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRV8_9RHOD)

HSP 1 Score: 60.8 bits (146), Expect = 6.560e-6
Identity = 68/280 (24.29%), Postives = 126/280 (45.00%), Query Frame = 0
Query:  535 LSSLSAWGDLSQLVVSRG---ALTAVL--RRPSMEQDARYVAAFLANLAR--KADLQVEIAHGGMRTLL---------------IALASKNESARKEAARALYNLSLGGVTKVMVAQSGALLPLVKVVSTSTGDARRYAVSVLTDISSAPERATTFAEANVIGSLLKAVED---DHMLSCDVARCISQLSQVAEVHGLLVKSGAVPWLVNIISRNGGRGERAGDTMLYCMIAVNNIAFSPGITREALRKSGAVPLLKSLSSSGMSGPMVLMGAKQALQNI 789
            +  LS   D+  L+ ++G   AL ++L  +      +A+ +   +ANL+R   A L +  + G +R L+                     NE+ R+E ARA++N+S  G+++VM AQ+G +   V + S S    RRY +  L+  +   E +   A+AN +  L  AV +   D   +      +++L+   ++H  L+  GA  +     +++        ++  Y + A+ N++ +P   R  L+  G   LL  L+ S      + M A   + NI
Sbjct:  177 IGQLSEDSDILYLLANQGLCQALYSILQGKLSLSSSEAQMLVHTVANLSRIDTAKLDLLGSRGALRLLMRLPLFWAQSPASRPQAHFIGNNEALRRELARAIFNVSTAGLSRVMAAQAGGVEAAVYLASDSDTVVRRYGIRALSLFAEQIENSIRIAQANGVPVLASAVANRRTDPETARAALLALAELTNNVDLHAQLLTLGAGSYFAQYATQSVDI-----ESQQYALAALCNLSATPA-GRTTLQNLGVHRLLSGLALSAAVPAELAMLANMVVANI 450          
The following BLAST results are available for this feature:
BLAST of Ggra6704.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
R7QPU31.170e-15546.35Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0BPX22.680e-4124.63Vacuolar protein 8 n=3 Tax=Rhodosorus marinus TaxI... [more]
M1V7Q97.140e-826.79Vacuolar protein 8 n=1 Tax=Cyanidioschyzon merolae... [more]
A0A7J7IRV86.560e-624.29Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 579..619
e-value: 1.6
score: 17.8
coord: 120..165
e-value: 100.0
score: 5.4
coord: 661..700
e-value: 47.0
score: 8.0
coord: 321..361
e-value: 18.0
score: 11.2
coord: 499..540
e-value: 18.0
score: 11.3
coord: 620..660
e-value: 190.0
score: 3.3
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 98..477
e-value: 2.6E-13
score: 51.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 478..796
e-value: 4.1E-34
score: 120.0
IPR045156Vacuolar protein 8PANTHERPTHR47249VACUOLAR PROTEIN 8coord: 483..720
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 115..722
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 489..789

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:243863..246292 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6704.t1Ggra6704.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 243863..246292 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6704.t1 ID=Ggra6704.t1|Name=Ggra6704.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=810bp
MQSFSRLSRTAACCLARHARRSSLNSNRSRNGGSSATPGVAVLTAAAATV
GVVAYCDADVAVSPSPPPTFLSSAPMQLSSRQEGGTFASQKGPLSQYSTL
LEEVSQGDARAIHTLALLVNDIHNHSELLKANVVAALRDALFVCEKEHEL
PLRLNVVRLLADLAKQNESHDFFMKADIVSILDRIVAESAAGMRQGWMEW
FYRYFSFESTKETESPSNLAKEGNTPFTELSPPGDAIIDYLKVDLTTPSK
PLDLQNGLAYNVTRCVANLARDTVTHDSLLETSLLRNLCDMLRQFSPDDL
EKDELQSETARHTILAVSALSKSAAQPVIRSSAHKALIIFAQCEDAVAQT
YSCGGLRNLARHSHLQDHEDISKVHRELVVSNVADALSNGMKAASAQTKV
FCALAFGDLMSTPHPKADLIRRRLEPAYEAFSELLADKNAAISRVISRVI
VTIFGDETGNSVVPEKLAKLIANESGQLVNGGVARGDRAALSAVRAMCND
QIVAKEMVDKGLLEVLVLGVRKGNPDFMQQCTAALSSLSAWGDLSQLVVS
RGALTAVLRRPSMEQDARYVAAFLANLARKADLQVEIAHGGMRTLLIALA
SKNESARKEAARALYNLSLGGVTKVMVAQSGALLPLVKVVSTSTGDARRY
AVSVLTDISSAPERATTFAEANVIGSLLKAVEDDHMLSCDVARCISQLSQ
VAEVHGLLVKSGAVPWLVNIISRNGGRGERAGDTMLYCMIAVNNIAFSPG
ITREALRKSGAVPLLKSLSSSGMSGPMVLMGAKQALQNIRGEKAALLPAE
NVTPSGEPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR045156Vac8
IPR016024ARM-type_fold