Ggra6701.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6701.t1
Unique NameGgra6701.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length536
Homology
BLAST of Ggra6701.t1 vs. uniprot
Match: A0A2V3IMH2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMH2_9FLOR)

HSP 1 Score: 430 bits (1106), Expect = 2.730e-141
Identity = 280/624 (44.87%), Postives = 358/624 (57.37%), Query Frame = 0
Query:    2 MQTTQVLERYRRLFGSLPNLSLTLSEADISAAQEAANTPEAWRAHFLSHSSANLRRALSHALLELVSICHSDDVQYERDEGMMEGDDGGYTSPASLLEEDKSSASSILCYDLLGA----------------PAGQS------------------SSESDALPYQS---TSTVLLAEQ-----------ALRQLTTFA----------EGQQSQAPE------------TQTFAPLFSELRAIRH---------------------FANVNPRPAPSASLLEILGHDHPVAKNVYNLRRYHAWRTAVVTKFREMRGDQSLKKEPIISQTSPRAKSPRLRGKKPRKDLIEIFNDVGQTIVPVTQDRHQATLLSSCALVLSHSGFSQASTSALNLLVDVVEEFIMQIGASLSAVRENVENSLDTATPAQRSRRRKTSDDRAQEFRIICDSGAKGGFLDLLYYTKIDAHRTAMKIHDAEKRLELHLLSGKESALLMRDHAQAKLIDDTALAELHNLPRPNEVKGGVKGQDGPVSEEDIKFDGEPFVFGYLCESVRLDVLGDVTVPVRAVYGNKKSIKDGVASGRVERVHRSPRPKSKNVSLQGTPSSSPSGAPFTPVKAEAKFVDIGD 534
            M T  V+ERYR+ F SL + SL LS A++ AA+EAANTP++WR    S  SANLRR LS ALL  ++   +DDV+YE D+GM++GDDGGY S  SLL+EDK  +S    Y LLG+                PA  +                   SES  +P  S   +S +  A+Q           +L+QL              EG  S A E            TQT + L   L A                        F   +PR  P  SL+E LG  HP+ KNV NLR +  WR A+++K  EMR   +LKKE +ISQ SPR KSPRLR KK R+D IE+FNDV +  V   QDR +AT LS+CAL+L+H  F+ AST+ALNLL DVVEEF+ +IGASL+A RENV+N+  TA      RR KTSD+R +E RIIC+SG +GGF +LLYY + +A R A+K+H+ +KR E  L+S ++ A L  D  Q KLID    AEL N  R    K   + QD P++EED+K D EPF+FGYL E+VRLDVLG++ VP R +YG K + KD  ASGRVE+V RSPRPK K V +  TPSSS   A  TPVK E   + + +
Sbjct:    1 MHTANVVERYRKFFRSLSHDSLHLSAAELLAAREAANTPQSWRQLIFSLDSANLRRQLSLALLANITASEADDVRYEPDQGMLDGDDGGYASLHSLLKEDKIRSSFPPPYALLGSTHEAPLPTHGSIPSPVPALSNIIRDVIDHTEQVRLEMSERSESRVIPALSAELSSMLSKAQQGHLRDPAQCAQSLQQLLEKHSLPEPLRQRFEGSISIARENARLRDQRRSISTQTTSLLTGLLAADASPSALQPLITLRPPRKRPRSPSFTGPSPRSEPPVSLVEFLGSAHPMVKNVNNLRHFRLWRAAIISKVTEMRAKSNLKKEAVISQPSPRVKSPRLRTKKARRDTIELFNDVERAGVSPKQDRIRATSLSACALLLAHVEFTHASTNALNLLCDVVEEFVTRIGASLTACRENVDNNEGTAAHRLGRRRTKTSDEREEELRIICESGFRGGFTELLYYARKEALRVAVKLHEMQKRFEHSLVSDEDGAALRSDPEQIKLIDAAVRAELSNQSRSTGGKIMPRQQDVPITEEDLKLDDEPFIFGYLNEAVRLDVLGNIKVPARILYGKKTTGKDSTASGRVEKVQRSPRPKGKIVPMSFTPSSSTPLASITPVKPEVSLMKVSE 624          
BLAST of Ggra6701.t1 vs. uniprot
Match: R7QN36 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN36_CHOCR)

HSP 1 Score: 95.9 bits (237), Expect = 4.690e-17
Identity = 87/338 (25.74%), Postives = 144/338 (42.60%), Query Frame = 0
Query:  188 SLLEILGHDHPVAKNVYNLRRYHAWRTAVVTKF----REMRGDQSLKKEPIISQTSPRAKS----PRLRGKKPRKDLI-----------------EIFNDVGQTIVPVTQ---------DRHQATLLSSCALVLSHSGFSQASTSALNLLVDVVEEFIMQIGASLSAVRENVENSLDTATPAQRSRRRKTSDDRAQEFRIICDSGAKGGFLDLLYYTKIDAHRTAMKIHDAEKRLELHL--LSGKESALLMRDHAQAKLIDDTALAELHNLPRPNEVKGGVKGQDGPVSE-----EDIKFDGEPFVFGYLCESVRLDVLGDVTVPVRAVYGNKKSIKD 484
            S++ ILG D+ + K++++L R    R  +   +    R     ++  K P +S      K     P       R  LI                 EI ND     + VT+          R +A   +  A++ +H+GF  AS+ A+ +L D +E+F+ +IG SL + REN++           + R+ + ++      ++C+SG +G F DL  Y + D  R    + +AE RL   +  L+ + +    R    A    D   A +   P  N+          P S+      D++ DG  F FGYL   V LDVLG + VP R + G+   ++D
Sbjct:  510 SIISILGTDNHIMKSIFSLHRVRKLREQIAVNWALLNRRRLAMRTSNKSPPLSTVRSSVKMEDVLPNNSSSPGRSKLIPSAAVGGHGGDQIDEDFEIRNDA----LDVTERDNNASREDSRERAMGRAVVAVMFTHAGFKHASSLAVEVLTDALEDFVERIGQSLVSCRENIDRPYSKVDSEGVASRKPSKEEVFAMLDLVCESGFQGNFYDLEGYVRYDILRNEQGLREAELRLRAQITKLNQEMAKTETRQTGSASSAADAGPANI--TPEQNK---------SPASQVFTPRNDVRLDGNAFTFGYLGSGVCLDVLGTIKVP-RKLAGDTPRLED 831          
The following BLAST results are available for this feature:
BLAST of Ggra6701.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IMH22.730e-14144.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QN364.690e-1725.74Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006565Bromodomain associated domainPFAMPF07524Bromo_TPcoord: 278..321
e-value: 3.6E-6
score: 26.9
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 270..333
e-value: 9.6E-6
score: 27.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 494..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 501..519

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:237866..239749 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6701.t1Ggra6701.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 237866..239749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6701.t1 ID=Ggra6701.t1|Name=Ggra6701.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MMQTTQVLERYRRLFGSLPNLSLTLSEADISAAQEAANTPEAWRAHFLSH
SSANLRRALSHALLELVSICHSDDVQYERDEGMMEGDDGGYTSPASLLEE
DKSSASSILCYDLLGAPAGQSSSESDALPYQSTSTVLLAEQALRQLTTFA
EGQQSQAPETQTFAPLFSELRAIRHFANVNPRPAPSASLLEILGHDHPVA
KNVYNLRRYHAWRTAVVTKFREMRGDQSLKKEPIISQTSPRAKSPRLRGK
KPRKDLIEIFNDVGQTIVPVTQDRHQATLLSSCALVLSHSGFSQASTSAL
NLLVDVVEEFIMQIGASLSAVRENVENSLDTATPAQRSRRRKTSDDRAQE
FRIICDSGAKGGFLDLLYYTKIDAHRTAMKIHDAEKRLELHLLSGKESAL
LMRDHAQAKLIDDTALAELHNLPRPNEVKGGVKGQDGPVSEEDIKFDGEP
FVFGYLCESVRLDVLGDVTVPVRAVYGNKKSIKDGVASGRVERVHRSPRP
KSKNVSLQGTPSSSPSGAPFTPVKAEAKFVDIGDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006565BTP
IPR009072Histone-fold