Ggra6701.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6701.t1
Unique NameGgra6701.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length536
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:237866..239749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6701Ggra6701Gracilaria gracilis GNS1m malegenetig00000056_pilon 237866..239749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6701.t1Ggra6701.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 237866..239749 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6701.t1.start1Ggra6701.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 237866..237868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6701.t1.CDS1Ggra6701.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 237866..238384 +
Ggra6701.t1.CDS2Ggra6701.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 238473..238477 +
Ggra6701.t1.CDS3Ggra6701.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 238666..239749 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6701.t1.exon1Ggra6701.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 237866..238384 +
Ggra6701.t1.exon2Ggra6701.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 238473..238477 +
Ggra6701.t1.exon3Ggra6701.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 238666..239749 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6701.t1.intron1Ggra6701.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 238385..238472 +
Ggra6701.t1.intron2Ggra6701.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 238478..238665 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6701.t1.stop1Ggra6701.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 239747..239749 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6701.t1 ID=Ggra6701.t1|Name=Ggra6701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=536bp
MMQTTQVLERYRRLFGSLPNLSLTLSEADISAAQEAANTPEAWRAHFLSH
SSANLRRALSHALLELVSICHSDDVQYERDEGMMEGDDGGYTSPASLLEE
DKSSASSILCYDLLGAPAGQSSSESDALPYQSTSTVLLAEQALRQLTTFA
EGQQSQAPETQTFAPLFSELRAIRHFANVNPRPAPSASLLEILGHDHPVA
KNVYNLRRYHAWRTAVVTKFREMRGDQSLKKEPIISQTSPRAKSPRLRGK
KPRKDLIEIFNDVGQTIVPVTQDRHQATLLSSCALVLSHSGFSQASTSAL
NLLVDVVEEFIMQIGASLSAVRENVENSLDTATPAQRSRRRKTSDDRAQE
FRIICDSGAKGGFLDLLYYTKIDAHRTAMKIHDAEKRLELHLLSGKESAL
LMRDHAQAKLIDDTALAELHNLPRPNEVKGGVKGQDGPVSEEDIKFDGEP
FVFGYLCESVRLDVLGDVTVPVRAVYGNKKSIKDGVASGRVERVHRSPRP
KSKNVSLQGTPSSSPSGAPFTPVKAEAKFVDIGDG*
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spliced messenger RNA

>Ggra6701.t1 ID=Ggra6701.t1|Name=Ggra6701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000056_pilon:237866..239749+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCAGACCACTCAAGTTCTGGAGCGATACCGCCGGCTGTTTGGTTC
TCTGCCGAATCTATCGCTCACGTTATCTGAAGCTGACATTTCAGCGGCAC
AAGAAGCAGCGAACACTCCGGAAGCCTGGAGAGCTCATTTCCTATCTCAC
TCAAGCGCCAATTTGCGCCGTGCACTATCGCACGCTCTCTTGGAATTGGT
TTCCATTTGCCACTCAGATGATGTACAATATGAACGCGATGAGGGAATGA
TGGAAGGCGATGACGGCGGTTACACTTCACCCGCGTCCCTGCTTGAGGAA
GATAAGAGTAGTGCTTCTTCAATTCTCTGTTACGACCTGCTTGGCGCTCC
GGCTGGCCAGTCTTCATCTGAAAGTGATGCACTTCCGTATCAATCGACAT
CCACGGTGCTTCTCGCGGAGCAGGCTCTTAGACAACTTACAACTTTCGCC
GAGGGCCAACAATCACAGGCTCCTGAAACCCAAACATTTGCGCCCTTGTT
TTCGGAATTGCGTGCAATTAGACATTTTGCGAATGTGAACCCTCGTCCTG
CTCCGTCTGCTTCATTACTTGAGATTTTGGGCCACGACCATCCTGTCGCC
AAAAACGTTTATAATCTTCGTCGCTACCATGCATGGCGTACTGCAGTGGT
AACTAAATTTCGAGAAATGCGAGGAGACCAAAGTTTGAAGAAAGAACCAA
TCATATCGCAAACCAGTCCTCGCGCGAAGAGTCCGCGATTGCGGGGGAAG
AAACCACGCAAAGACTTGATAGAAATATTCAATGATGTAGGGCAGACCAT
TGTCCCTGTGACTCAAGATCGTCATCAAGCCACGCTGCTTTCTTCGTGTG
CTTTGGTTCTTTCACACTCTGGGTTTTCACAAGCCTCCACAAGCGCTTTG
AACCTTTTGGTGGACGTCGTCGAGGAGTTCATCATGCAAATAGGTGCTAG
TCTCAGTGCTGTACGGGAAAACGTTGAGAACTCTTTGGACACTGCTACCC
CGGCACAAAGGAGCCGCAGACGAAAAACTTCTGATGACAGAGCTCAAGAG
TTCAGGATCATATGCGACTCAGGTGCTAAAGGTGGTTTTCTAGATTTGTT
GTATTACACAAAGATCGATGCACATCGCACTGCTATGAAGATCCACGACG
CGGAGAAAAGACTTGAGCTTCACCTTCTTAGTGGCAAGGAAAGCGCACTT
CTTATGCGAGACCACGCCCAGGCCAAGCTGATTGATGACACTGCACTCGC
AGAGCTTCATAATCTACCCCGCCCAAATGAAGTCAAAGGAGGCGTAAAAG
GGCAGGATGGGCCCGTGTCTGAAGAAGATATCAAGTTTGACGGTGAACCG
TTTGTCTTTGGTTATCTTTGTGAATCTGTTCGTCTAGATGTTCTTGGTGA
TGTAACAGTTCCGGTACGAGCAGTTTACGGGAACAAGAAATCTATCAAGG
ACGGTGTTGCGAGTGGCCGTGTTGAGCGAGTTCATCGATCACCACGGCCG
AAGAGCAAGAATGTGTCTCTGCAGGGCACCCCTTCTTCATCACCTTCAGG
TGCACCGTTTACACCGGTCAAGGCGGAAGCAAAGTTTGTGGATATAGGTG
ACGGATAA
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protein sequence of Ggra6701.t1

>Ggra6701.t1 ID=Ggra6701.t1|Name=Ggra6701.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MMQTTQVLERYRRLFGSLPNLSLTLSEADISAAQEAANTPEAWRAHFLSH
SSANLRRALSHALLELVSICHSDDVQYERDEGMMEGDDGGYTSPASLLEE
DKSSASSILCYDLLGAPAGQSSSESDALPYQSTSTVLLAEQALRQLTTFA
EGQQSQAPETQTFAPLFSELRAIRHFANVNPRPAPSASLLEILGHDHPVA
KNVYNLRRYHAWRTAVVTKFREMRGDQSLKKEPIISQTSPRAKSPRLRGK
KPRKDLIEIFNDVGQTIVPVTQDRHQATLLSSCALVLSHSGFSQASTSAL
NLLVDVVEEFIMQIGASLSAVRENVENSLDTATPAQRSRRRKTSDDRAQE
FRIICDSGAKGGFLDLLYYTKIDAHRTAMKIHDAEKRLELHLLSGKESAL
LMRDHAQAKLIDDTALAELHNLPRPNEVKGGVKGQDGPVSEEDIKFDGEP
FVFGYLCESVRLDVLGDVTVPVRAVYGNKKSIKDGVASGRVERVHRSPRP
KSKNVSLQGTPSSSPSGAPFTPVKAEAKFVDIGDG*
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mRNA from alignment at tig00000056_pilon:237866..239749+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6701.t1 ID=Ggra6701.t1|Name=Ggra6701.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1884bp|location=Sequence derived from alignment at tig00000056_pilon:237866..239749+ (Gracilaria gracilis GNS1m male)
ATGATGCAGACCACTCAAGTTCTGGAGCGATACCGCCGGCTGTTTGGTTC
TCTGCCGAATCTATCGCTCACGTTATCTGAAGCTGACATTTCAGCGGCAC
AAGAAGCAGCGAACACTCCGGAAGCCTGGAGAGCTCATTTCCTATCTCAC
TCAAGCGCCAATTTGCGCCGTGCACTATCGCACGCTCTCTTGGAATTGGT
TTCCATTTGCCACTCAGATGATGTACAATATGAACGCGATGAGGGAATGA
TGGAAGGCGATGACGGCGGTTACACTTCACCCGCGTCCCTGCTTGAGGAA
GATAAGAGTAGTGCTTCTTCAATTCTCTGTTACGACCTGCTTGGCGCTCC
GGCTGGCCAGTCTTCATCTGAAAGTGATGCACTTCCGTATCAATCGACAT
CCACGGTGCTTCTCGCGGAGCAGGCTCTTAGACAACTTACAACTTTCGCC
GAGGGCCAACAATCACAGGCTCCTGAAACCCAAACATTTGCGCCCTTGTT
TTCGGAATTGCGTGCAATTGTGCTCAAAGCGCGGACGAGAGAGCTCCGTC
ATCCGGATCAACTTGCGGACGCTCTACAAACTCTAATTGAGGACCAAAAC
GCGCCAGAGACAGTACGTGAACAACTGAAATCTTTTATCTCCGACGCTAG
AAGATGTGCGCAGGCTTGTCATGAAAGAGCTCTGGTCCGTTCTCAAGCCG
ACGCTTTATTAACTGGTCTTCTGTCTTCCAACGCACCCAAATCGTCGTTT
ACGCCTGCCGTCGCGTTACGTACGCCTCGAAAACGTCCGCGCGCTCCAAG
TTTTGCGAATGTGAACCCTCGTCCTGCTCCGTCTGCTTCATTACTTGAGA
TTTTGGGCCACGACCATCCTGTCGCCAAAAACGTTTATAATCTTCGTCGC
TACCATGCATGGCGTACTGCAGTGGTAACTAAATTTCGAGAAATGCGAGG
AGACCAAAGTTTGAAGAAAGAACCAATCATATCGCAAACCAGTCCTCGCG
CGAAGAGTCCGCGATTGCGGGGGAAGAAACCACGCAAAGACTTGATAGAA
ATATTCAATGATGTAGGGCAGACCATTGTCCCTGTGACTCAAGATCGTCA
TCAAGCCACGCTGCTTTCTTCGTGTGCTTTGGTTCTTTCACACTCTGGGT
TTTCACAAGCCTCCACAAGCGCTTTGAACCTTTTGGTGGACGTCGTCGAG
GAGTTCATCATGCAAATAGGTGCTAGTCTCAGTGCTGTACGGGAAAACGT
TGAGAACTCTTTGGACACTGCTACCCCGGCACAAAGGAGCCGCAGACGAA
AAACTTCTGATGACAGAGCTCAAGAGTTCAGGATCATATGCGACTCAGGT
GCTAAAGGTGGTTTTCTAGATTTGTTGTATTACACAAAGATCGATGCACA
TCGCACTGCTATGAAGATCCACGACGCGGAGAAAAGACTTGAGCTTCACC
TTCTTAGTGGCAAGGAAAGCGCACTTCTTATGCGAGACCACGCCCAGGCC
AAGCTGATTGATGACACTGCACTCGCAGAGCTTCATAATCTACCCCGCCC
AAATGAAGTCAAAGGAGGCGTAAAAGGGCAGGATGGGCCCGTGTCTGAAG
AAGATATCAAGTTTGACGGTGAACCGTTTGTCTTTGGTTATCTTTGTGAA
TCTGTTCGTCTAGATGTTCTTGGTGATGTAACAGTTCCGGTACGAGCAGT
TTACGGGAACAAGAAATCTATCAAGGACGGTGTTGCGAGTGGCCGTGTTG
AGCGAGTTCATCGATCACCACGGCCGAAGAGCAAGAATGTGTCTCTGCAG
GGCACCCCTTCTTCATCACCTTCAGGTGCACCGTTTACACCGGTCAAGGC
GGAAGCAAAGTTTGTGGATATAGGTGACGGATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:237866..239749+

>Ggra6701.t1 ID=Ggra6701.t1|Name=Ggra6701.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00000056_pilon:237866..239749+ (Gracilaria gracilis GNS1m male)
ATGATGCAGACCACTCAAGTTCTGGAGCGATACCGCCGGCTGTTTGGTTC
TCTGCCGAATCTATCGCTCACGTTATCTGAAGCTGACATTTCAGCGGCAC
AAGAAGCAGCGAACACTCCGGAAGCCTGGAGAGCTCATTTCCTATCTCAC
TCAAGCGCCAATTTGCGCCGTGCACTATCGCACGCTCTCTTGGAATTGGT
TTCCATTTGCCACTCAGATGATGTACAATATGAACGCGATGAGGGAATGA
TGGAAGGCGATGACGGCGGTTACACTTCACCCGCGTCCCTGCTTGAGGAA
GATAAGAGTAGTGCTTCTTCAATTCTCTGTTACGACCTGCTTGGCGCTCC
GGCTGGCCAGTCTTCATCTGAAAGTGATGCACTTCCGTATCAATCGACAT
CCACGGTGCTTCTCGCGGAGCAGGCTCTTAGACAACTTACAACTTTCGCC
GAGGGCCAACAATCACAGGCTCCTGAAACCCAAACATTTGCGCCCTTGTT
TTCGGAATTGCGTGCAATTAGACATTTTGCGAATGTGAACCCTCGTCCTG
CTCCGTCTGCTTCATTACTTGAGATTTTGGGCCACGACCATCCTGTCGCC
AAAAACGTTTATAATCTTCGTCGCTACCATGCATGGCGTACTGCAGTGGT
AACTAAATTTCGAGAAATGCGAGGAGACCAAAGTTTGAAGAAAGAACCAA
TCATATCGCAAACCAGTCCTCGCGCGAAGAGTCCGCGATTGCGGGGGAAG
AAACCACGCAAAGACTTGATAGAAATATTCAATGATGTAGGGCAGACCAT
TGTCCCTGTGACTCAAGATCGTCATCAAGCCACGCTGCTTTCTTCGTGTG
CTTTGGTTCTTTCACACTCTGGGTTTTCACAAGCCTCCACAAGCGCTTTG
AACCTTTTGGTGGACGTCGTCGAGGAGTTCATCATGCAAATAGGTGCTAG
TCTCAGTGCTGTACGGGAAAACGTTGAGAACTCTTTGGACACTGCTACCC
CGGCACAAAGGAGCCGCAGACGAAAAACTTCTGATGACAGAGCTCAAGAG
TTCAGGATCATATGCGACTCAGGTGCTAAAGGTGGTTTTCTAGATTTGTT
GTATTACACAAAGATCGATGCACATCGCACTGCTATGAAGATCCACGACG
CGGAGAAAAGACTTGAGCTTCACCTTCTTAGTGGCAAGGAAAGCGCACTT
CTTATGCGAGACCACGCCCAGGCCAAGCTGATTGATGACACTGCACTCGC
AGAGCTTCATAATCTACCCCGCCCAAATGAAGTCAAAGGAGGCGTAAAAG
GGCAGGATGGGCCCGTGTCTGAAGAAGATATCAAGTTTGACGGTGAACCG
TTTGTCTTTGGTTATCTTTGTGAATCTGTTCGTCTAGATGTTCTTGGTGA
TGTAACAGTTCCGGTACGAGCAGTTTACGGGAACAAGAAATCTATCAAGG
ACGGTGTTGCGAGTGGCCGTGTTGAGCGAGTTCATCGATCACCACGGCCG
AAGAGCAAGAATGTGTCTCTGCAGGGCACCCCTTCTTCATCACCTTCAGG
TGCACCGTTTACACCGGTCAAGGCGGAAGCAAAGTTTGTGGATATAGGTG
ACGGATAA
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