Ggra6697.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6697.t1
Unique NameGgra6697.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Homology
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BLAST of Ggra6697.t1 vs. uniprot
Match: A0A2V3IJN5 (DNA repair protein RAD51-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJN5_9FLOR)

HSP 1 Score: 302 bits (773), Expect = 1.480e-101
Identity = 142/207 (68.60%), Postives = 172/207 (83.09%), Query Frame = 0 
Query:   14 IPTMLPELDAVLQGGIPKGSVSEIYSTSFHSTHLLHTVAASSCRGRGALLIDTRGTPASRLLQIAKSRNLTITGAVCIIRVFTFADASTLIHTLPNWLEKVGGVDLLGLDCMADLFYTCVDNAAKRIEGFVLRLRELAIRFNAAVVIANAARRHQNRVVTVMGEQWHHVCASRFHMHQSPNYITIVKSMLTETKSIPYQLTEAGVVE 220
            +PTM   LD +LQGG+P+GS++E+YST+  + HLLHTVA SSCRGRGALLIDTRGTPA+ LLQIAKSRNL +   V + RVFTFADA  L+H LP+W+   G VD +GLDCMADLFYTC DN+AKR+EGFV RLR ++I+FNAAV+I NAAR HQNRV TVMGEQWHHVCA+R HM Q+P+ I +VKS+LTE K +PYQLTEAGV++
Sbjct:   17 VPTMHFALDTLLQGGLPRGSITEVYSTNLSAAHLLHTVAVSSCRGRGALLIDTRGTPAAHLLQIAKSRNLPVRSPVSVFRVFTFADACALLHALPSWISTRGAVDFIGLDCMADLFYTCQDNSAKRMEGFVNRLRGMSIQFNAAVLITNAARVHQNRVTTVMGEQWHHVCANRLHMQQNPSCIRVVKSILTEPKIVPYQLTEAGVID 223
The following BLAST results are available for this feature:
BLAST of Ggra6697.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IJN51.480e-10168.60DNA repair protein RAD51-like n=1 Tax=Gracilariops... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 16..168
e-value: 4.9E-10
score: 39.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 11..220
e-value: 3.7E-33
score: 117.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..219
NoneNo IPR availablePANTHERPTHR46239DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51Ccoord: 13..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:224305..224967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6697.t1Ggra6697.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 224305..224967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6697.t1 ID=Ggra6697.t1|Name=Ggra6697.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MEANESSPSFDCAIPTMLPELDAVLQGGIPKGSVSEIYSTSFHSTHLLHT
VAASSCRGRGALLIDTRGTPASRLLQIAKSRNLTITGAVCIIRVFTFADA
STLIHTLPNWLEKVGGVDLLGLDCMADLFYTCVDNAAKRIEGFVLRLREL
AIRFNAAVVIANAARRHQNRVVTVMGEQWHHVCASRFHMHQSPNYITIVK
SMLTETKSIPYQLTEAGVVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013632DNA_recomb/repair_Rad51_C
IPR027417P-loop_NTPase