Ggra6697.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6697.t1
Unique NameGgra6697.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:224305..224967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0232315
PFAMsRad51
Max annot lvl554915|Amoebozoa
KEGG koko:K10870
KEGG Pathwayko03440,ko03460,map03440,map03460
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042148,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
Evalue6.98e-06
EggNOG OGsCOG0468@1|root,KOG1434@2759|Eukaryota,3XEGR@554915|Amoebozoa
DescriptionKaiC
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6697Ggra6697Gracilaria gracilis GNS1m malegenetig00000056_pilon 224305..224967 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6697.t1.stop1Ggra6697.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 224305..224307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6697.t1.CDS1Ggra6697.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 224305..224967 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6697.t1.exon1Ggra6697.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 224305..224967 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6697.t1.start1Ggra6697.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 224965..224967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6697.t1Ggra6697.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 224305..224967 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6697.t1 ID=Ggra6697.t1|Name=Ggra6697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=221bp
MEANESSPSFDCAIPTMLPELDAVLQGGIPKGSVSEIYSTSFHSTHLLHT
VAASSCRGRGALLIDTRGTPASRLLQIAKSRNLTITGAVCIIRVFTFADA
STLIHTLPNWLEKVGGVDLLGLDCMADLFYTCVDNAAKRIEGFVLRLREL
AIRFNAAVVIANAARRHQNRVVTVMGEQWHHVCASRFHMHQSPNYITIVK
SMLTETKSIPYQLTEAGVVE*
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spliced messenger RNA

>Ggra6697.t1 ID=Ggra6697.t1|Name=Ggra6697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000056_pilon:224305..224967- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCCAATGAATCTAGTCCATCTTTCGACTGCGCCATTCCGACGAT
GCTACCGGAGCTGGATGCTGTTCTGCAAGGAGGGATACCAAAAGGATCCG
TCTCGGAAATATACAGTACCAGCTTTCACTCTACGCATCTTCTTCACACT
GTAGCTGCTTCCTCTTGCAGGGGACGTGGTGCTCTACTAATCGATACTCG
TGGAACCCCAGCTTCTCGGCTTCTACAAATAGCAAAGAGTCGAAACCTGA
CAATTACAGGGGCTGTATGCATTATTCGCGTTTTCACCTTTGCAGACGCA
TCCACTCTTATCCATACTCTGCCGAACTGGCTTGAAAAGGTCGGGGGCGT
TGATCTGCTCGGTCTAGACTGTATGGCTGATCTTTTCTATACGTGCGTCG
ACAATGCAGCGAAGAGGATCGAAGGCTTTGTACTTCGCCTCCGTGAGCTT
GCTATTCGCTTCAACGCTGCCGTCGTGATTGCTAATGCTGCACGCAGGCA
TCAAAATCGAGTTGTGACGGTGATGGGCGAGCAATGGCATCACGTTTGCG
CTAGCCGGTTTCACATGCATCAAAGCCCAAACTATATAACTATCGTCAAG
AGCATGCTGACGGAAACGAAAAGTATCCCGTATCAACTGACGGAAGCTGG
GGTAGTTGAATAA
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protein sequence of Ggra6697.t1

>Ggra6697.t1 ID=Ggra6697.t1|Name=Ggra6697.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=221bp
MEANESSPSFDCAIPTMLPELDAVLQGGIPKGSVSEIYSTSFHSTHLLHT
VAASSCRGRGALLIDTRGTPASRLLQIAKSRNLTITGAVCIIRVFTFADA
STLIHTLPNWLEKVGGVDLLGLDCMADLFYTCVDNAAKRIEGFVLRLREL
AIRFNAAVVIANAARRHQNRVVTVMGEQWHHVCASRFHMHQSPNYITIVK
SMLTETKSIPYQLTEAGVVE*
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mRNA from alignment at tig00000056_pilon:224305..224967-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6697.t1 ID=Ggra6697.t1|Name=Ggra6697.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00000056_pilon:224305..224967- (Gracilaria gracilis GNS1m male)
ATGGAAGCCAATGAATCTAGTCCATCTTTCGACTGCGCCATTCCGACGAT
GCTACCGGAGCTGGATGCTGTTCTGCAAGGAGGGATACCAAAAGGATCCG
TCTCGGAAATATACAGTACCAGCTTTCACTCTACGCATCTTCTTCACACT
GTAGCTGCTTCCTCTTGCAGGGGACGTGGTGCTCTACTAATCGATACTCG
TGGAACCCCAGCTTCTCGGCTTCTACAAATAGCAAAGAGTCGAAACCTGA
CAATTACAGGGGCTGTATGCATTATTCGCGTTTTCACCTTTGCAGACGCA
TCCACTCTTATCCATACTCTGCCGAACTGGCTTGAAAAGGTCGGGGGCGT
TGATCTGCTCGGTCTAGACTGTATGGCTGATCTTTTCTATACGTGCGTCG
ACAATGCAGCGAAGAGGATCGAAGGCTTTGTACTTCGCCTCCGTGAGCTT
GCTATTCGCTTCAACGCTGCCGTCGTGATTGCTAATGCTGCACGCAGGCA
TCAAAATCGAGTTGTGACGGTGATGGGCGAGCAATGGCATCACGTTTGCG
CTAGCCGGTTTCACATGCATCAAAGCCCAAACTATATAACTATCGTCAAG
AGCATGCTGACGGAAACGAAAAGTATCCCGTATCAACTGACGGAAGCTGG
GGTAGTTGAATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:224305..224967-

>Ggra6697.t1 ID=Ggra6697.t1|Name=Ggra6697.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00000056_pilon:224305..224967- (Gracilaria gracilis GNS1m male)
ATGGAAGCCAATGAATCTAGTCCATCTTTCGACTGCGCCATTCCGACGAT
GCTACCGGAGCTGGATGCTGTTCTGCAAGGAGGGATACCAAAAGGATCCG
TCTCGGAAATATACAGTACCAGCTTTCACTCTACGCATCTTCTTCACACT
GTAGCTGCTTCCTCTTGCAGGGGACGTGGTGCTCTACTAATCGATACTCG
TGGAACCCCAGCTTCTCGGCTTCTACAAATAGCAAAGAGTCGAAACCTGA
CAATTACAGGGGCTGTATGCATTATTCGCGTTTTCACCTTTGCAGACGCA
TCCACTCTTATCCATACTCTGCCGAACTGGCTTGAAAAGGTCGGGGGCGT
TGATCTGCTCGGTCTAGACTGTATGGCTGATCTTTTCTATACGTGCGTCG
ACAATGCAGCGAAGAGGATCGAAGGCTTTGTACTTCGCCTCCGTGAGCTT
GCTATTCGCTTCAACGCTGCCGTCGTGATTGCTAATGCTGCACGCAGGCA
TCAAAATCGAGTTGTGACGGTGATGGGCGAGCAATGGCATCACGTTTGCG
CTAGCCGGTTTCACATGCATCAAAGCCCAAACTATATAACTATCGTCAAG
AGCATGCTGACGGAAACGAAAAGTATCCCGTATCAACTGACGGAAGCTGG
GGTAGTTGAATAA
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