Ggra6685.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6685.t1
Unique Name	Ggra6685.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	175

Homology

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BLAST of Ggra6685.t1 vs. uniprot
Match: A0A2V3IDU8 (Sep15_SelM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDU8_9FLOR)

HSP 1 Score: 224 bits (572), Expect = 2.050e-72
Identity = 116/178 (65.17%), Postives = 142/178 (79.78%), Query Frame = 0

Query:    1 MTLNLTHGISRLT-STRKGRLFTIAILTLSCCAIFLSHGNGANSMTVLKPSL---EVDKQVSPVSAEHAASEQPLTVQPGADGVKRTAKIVTCPACRLNKLPSVKKFVYTHADHFKPALTISFIMGESPVLHLYEDEKEVSEIDLADYDWKKIIQKLDSFGIKPTSETSEIREALDEK 174
            M+LN+   + RLT STR+ R  +IA+LTL   A+F+S GN ANS+TVL+P+L   + DKQ+ PV+A+   S +  TV+ G+DGVKRTAKIVTCP CRLN LP VKKFVY HA HF+PAL + FI+G  PVL LYED+KEVS+IDLADYDWKKII+KLD+FGIKPT+ETSEIREALD K
Sbjct:    1 MSLNVAREVIRLTASTRQRRFISIAVLTLMFVAVFMSQGNEANSITVLRPTLGEAQGDKQLKPVAADSVPSVKSETVEAGSDGVKRTAKIVTCPRCRLNSLPMVKKFVYDHAKHFEPALKVDFILGRDPVLFLYEDDKEVSKIDLADYDWKKIIKKLDTFGIKPTTETSEIREALDGK 178

[Close]

BLAST of Ggra6685.t1 vs. uniprot
Match: R7QQH5 (Sep15_SelM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQH5_CHOCR)

HSP 1 Score: 136 bits (343), Expect = 9.480e-38
Identity = 79/176 (44.89%), Postives = 103/176 (58.52%), Query Frame = 0

Query:    1 MTLNLTHGISRLTSTRKGRLFTIAILTLSCCAIFLSHGNGANSMTVLKPSLEVDKQVSPVSAEHAASEQPLTVQP----GADGVKRTAKIVTCPACRLNKLPSVKKFVYTHADHFKPALTISFIMGESPVLHLYEDEKEVSEIDLADYDWKKIIQKLDSFGIKPTSETSEIREALD 172
            MTL +T GI+ L   ++ R+  +  L L      +S G G         SL+     S  + EHA  + PL  +     GA    +TA IVTCP CRLN LP VKKFVY HA  F+P L + FI+GE PVLHLY+  KEV E+ LA +DWK+I++KL  FGIKP   T ++REAL+
Sbjct:    1 MTLRITRGITSL--PKRVRVIAVTFLALMALLTLMSDG-GPRETDATPESLK-----SASAGEHAVDDVPLAPKSRLDLGASEEGKTATIVTCPRCRLNSLPLVKKFVYHHAKLFEPRLKVDFILGEDPVLHLYDHGKEVEEVPLAKFDWKQIMRKLVEFGIKPIDVTEDVREALE 168

The following BLAST results are available for this feature:

BLAST of Ggra6685.t1 vs. uniprot

BLAST of Ggra6685.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IDU8	2.050e-72	65.17	Sep15_SelM domain-containing protein n=1 Tax=Graci...	[more]
R7QQH5	9.480e-38	44.89	Sep15_SelM domain-containing protein n=1 Tax=Chond...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 80..171 e-value: 6.5E-18 score: 66.6
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 85..154 e-value: 2.0E-12 score: 47.0
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..174
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..38
None	No IPR available	TMHMM	TMhelix		coord: 20..37
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 83..163

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:194952..195558 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6685.t1	Ggra6685.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000056_pilon 194952..195558 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6685.t1 ID=Ggra6685.t1|Name=Ggra6685.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MTLNLTHGISRLTSTRKGRLFTIAILTLSCCAIFLSHGNGANSMTVLKPS
LEVDKQVSPVSAEHAASEQPLTVQPGADGVKRTAKIVTCPACRLNKLPSV
KKFVYTHADHFKPALTISFIMGESPVLHLYEDEKEVSEIDLADYDWKKII
QKLDSFGIKPTSETSEIREALDEK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR038219	Sep15/SelM_sf
IPR014912	Sep15_SelM_dom
IPR036249	Thioredoxin-like_sf