Ggra6685.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6685.t1
Unique NameGgra6685.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:194952..195558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009037933.1
PFAMsSep15_SelM
Max annot lvl2759|Eukaryota
Evalue3.02e-07
EggNOG OGs2D0XF@1|root,2SFWH@2759|Eukaryota
DescriptionSep15/SelM redox domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6685Ggra6685Gracilaria gracilis GNS1m malegenetig00000056_pilon 194952..195558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6685.t1Ggra6685.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 194952..195558 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6685.t1.start1Ggra6685.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 194952..194954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6685.t1.CDS1Ggra6685.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 194952..195377 +
Ggra6685.t1.CDS2Ggra6685.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 195460..195558 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6685.t1.exon1Ggra6685.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 194952..195377 +
Ggra6685.t1.exon2Ggra6685.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 195460..195558 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6685.t1.intron1Ggra6685.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 195378..195459 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6685.t1.stop1Ggra6685.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 195556..195558 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6685.t1 ID=Ggra6685.t1|Name=Ggra6685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=175bp
MTLNLTHGISRLTSTRKGRLFTIAILTLSCCAIFLSHGNGANSMTVLKPS
LEVDKQVSPVSAEHAASEQPLTVQPGADGVKRTAKIVTCPACRLNKLPSV
KKFVYTHADHFKPALTISFIMGESPVLHLYEDEKEVSEIDLADYDWKKII
QKLDSFGIKPTSETSEIREALDEK*
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spliced messenger RNA

>Ggra6685.t1 ID=Ggra6685.t1|Name=Ggra6685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000056_pilon:194952..195558+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCTCAACCTCACCCACGGCATAAGCCGGCTCACATCAACCCGTAA
AGGTCGTCTTTTCACCATCGCAATCCTCACCTTATCATGTTGCGCAATCT
TTTTATCACATGGAAACGGAGCAAACTCAATGACGGTTCTCAAACCAAGT
CTTGAAGTTGACAAACAAGTATCGCCTGTAAGCGCTGAACACGCCGCTTC
TGAGCAGCCTCTCACTGTGCAACCTGGAGCAGATGGCGTGAAGCGAACGG
CAAAGATTGTTACATGTCCTGCATGTCGACTCAACAAACTACCGTCGGTG
AAGAAGTTTGTCTATACCCATGCCGATCACTTTAAACCGGCACTGACGAT
TAGCTTTATCATGGGCGAAAGCCCTGTGTTGCACCTTTATGAAGACGAGA
AGGAAGTCTCTGAGATTGACTTAGCGGATTACGACTGGAAGAAAATCATT
CAGAAACTAGATTCGTTTGGTATAAAGCCGACTTCTGAAACCAGCGAAAT
ACGAGAAGCGCTCGACGAGAAGTAG
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protein sequence of Ggra6685.t1

>Ggra6685.t1 ID=Ggra6685.t1|Name=Ggra6685.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=175bp
MTLNLTHGISRLTSTRKGRLFTIAILTLSCCAIFLSHGNGANSMTVLKPS
LEVDKQVSPVSAEHAASEQPLTVQPGADGVKRTAKIVTCPACRLNKLPSV
KKFVYTHADHFKPALTISFIMGESPVLHLYEDEKEVSEIDLADYDWKKII
QKLDSFGIKPTSETSEIREALDEK*
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mRNA from alignment at tig00000056_pilon:194952..195558+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6685.t1 ID=Ggra6685.t1|Name=Ggra6685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=607bp|location=Sequence derived from alignment at tig00000056_pilon:194952..195558+ (Gracilaria gracilis GNS1m male)
ATGACTCTCAACCTCACCCACGGCATAAGCCGGCTCACATCAACCCGTAA
AGGTCGTCTTTTCACCATCGCAATCCTCACCTTATCATGTTGCGCAATCT
TTTTATCACATGGAAACGGAGCAAACTCAATGACGGTTCTCAAACCAAGT
CTTGAAGTTGACAAACAAGTATCGCCTGTAAGCGCTGAACACGCCGCTTC
TGAGCAGCCTCTCACTGTGCAACCTGGAGCAGATGGCGTGAAGCGAACGG
CAAAGATTGTTACATGTCCTGCATGTCGACTCAACAAACTACCGTCGGTG
AAGAAGTTTGTCTATACCCATGCCGATCACTTTAAACCGGCACTGACGAT
TAGCTTTATCATGGGCGAAAGCCCTGTGTTGCACCTTTATGAAGACGAGA
AGGAAGTCTCTGAGATTGACTTAGCGGTAAGTGCTTTTTCTAGGTGTTCC
TTTTTATTTGTTCAAAACCACAGCTGACCACGCGTTGTTGCTATGTTTTA
CTCAGAAGGATTACGACTGGAAGAAAATCATTCAGAAACTAGATTCGTTT
GGTATAAAGCCGACTTCTGAAACCAGCGAAATACGAGAAGCGCTCGACGA
GAAGTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:194952..195558+

>Ggra6685.t1 ID=Ggra6685.t1|Name=Ggra6685.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000056_pilon:194952..195558+ (Gracilaria gracilis GNS1m male)
ATGACTCTCAACCTCACCCACGGCATAAGCCGGCTCACATCAACCCGTAA
AGGTCGTCTTTTCACCATCGCAATCCTCACCTTATCATGTTGCGCAATCT
TTTTATCACATGGAAACGGAGCAAACTCAATGACGGTTCTCAAACCAAGT
CTTGAAGTTGACAAACAAGTATCGCCTGTAAGCGCTGAACACGCCGCTTC
TGAGCAGCCTCTCACTGTGCAACCTGGAGCAGATGGCGTGAAGCGAACGG
CAAAGATTGTTACATGTCCTGCATGTCGACTCAACAAACTACCGTCGGTG
AAGAAGTTTGTCTATACCCATGCCGATCACTTTAAACCGGCACTGACGAT
TAGCTTTATCATGGGCGAAAGCCCTGTGTTGCACCTTTATGAAGACGAGA
AGGAAGTCTCTGAGATTGACTTAGCGGATTACGACTGGAAGAAAATCATT
CAGAAACTAGATTCGTTTGGTATAAAGCCGACTTCTGAAACCAGCGAAAT
ACGAGAAGCGCTCGACGAGAAGTAG
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