Ggra6605.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6605.t1
Unique NameGgra6605.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Homology
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A2V3J467 (SAM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J467_9FLOR)

HSP 1 Score: 282 bits (721), Expect = 6.820e-92
Identity = 143/201 (71.14%), Postives = 170/201 (84.58%), Query Frame = 0
Query:  128 RAPSSATSSVPKVRTVSDVQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVFMLILAFAAFVLSLTILAIRN 328
            R  +S  +   KVRTV+DV+KWL D G+SQYA  F +NEV+G ILKTLTSEELRDDL VTNLRHRR I DA   L++E+APPTAQ LPEHGRILDHLSNVRTYHSW+RVGIQFL FAVVTLRL+PNFR+T L++A+S YFA+VGI+AL+Y V+RYK VIDMIESSGPST+ Y+PDRVGVV ML +A AAF L+L I+A+R+
Sbjct:   25 RVVASENAPAAKVRTVADVRKWLCDLGYSQYADSFSSNEVNGSILKTLTSEELRDDLAVTNLRHRRHILDATRRLLQEDAPPTAQYLPEHGRILDHLSNVRTYHSWIRVGIQFLAFAVVTLRLAPNFRSTALVTAASFYFALVGISALLYAVFRYKRVIDMIESSGPSTHNYTPDRVGVVSMLFIALAAFTLALIIIALRH 225          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A1X6P5I1 (SAM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P5I1_PORUM)

HSP 1 Score: 218 bits (556), Expect = 9.140e-66
Identity = 111/201 (55.22%), Postives = 146/201 (72.64%), Query Frame = 0
Query:  130 PSSATSSVP-KVRTVSDVQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEA--------PPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVFML--ILAFAAFVL 319
            P++  + +P KV + +DVQ WLS  G+++Y P F  NE+ G +L+TLTS+ELRDDLGV +LRHRR++ DAI  L+  +A        P     LPEHGRILDHLSNVR+YHSW+RVG+Q LGF++VTLRL+P FR   L++A+S+YFA +G+ AL+YGV+RY+ VI MIE SG  T  Y PDRVGV+ ML  +L  A FVL
Sbjct:  105 PAAPPAPMPDKVHSSADVQSWLSALGYARYGPTFAANEITGDVLRTLTSDELRDDLGVRHLRHRRDLLDAISALLARDAELRSSPTVPDVVDALPEHGRILDHLSNVRSYHSWMRVGVQMLGFSIVTLRLTPKFRERPLVTAASLYFAAIGVGALLYGVFRYRQVIGMIERSGAKTPAYDPDRVGVLAMLFAVLTAAVFVL 305          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A7S2ZTG3 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZTG3_9RHOD)

HSP 1 Score: 181 bits (458), Expect = 2.940e-52
Identity = 97/197 (49.24%), Postives = 130/197 (65.99%), Query Frame = 0
Query:  126 LSRAPSSATSSVPKVRTVSDVQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTR-LISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVFMLILAFAAFVLSL 321
            +S   SS   +   ++T  DV  WL + G  +Y   F++NE++G IL +LTSEELRDDLGV NL+HRRE+  AI  +   +       LPEHGRILDHLSNVRT+HSW+RVG+Q L FA+V+LRL P +R  R LI+  S+Y++ VG  A++YG+ RY  V+  IE SG  T  Y PD++GV  ML+L   A  L+L
Sbjct:   16 VSGESSSVAEAWQGLQTSEDVANWLRELGKDEYISTFMSNEINGEILASLTSEELRDDLGVINLKHRRELLTAIKSIGGMKKGEDT--LPEHGRILDHLSNVRTFHSWVRVGVQLLAFALVSLRLFPTWRENRNLITGCSLYYSCVGAFAILYGLARYALVVKWIEESGVKTPKYHPDKIGVAVMLVLVLVATALTL 210          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A5J4YSG0 (SAM domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSG0_PORPP)

HSP 1 Score: 168 bits (425), Expect = 8.770e-47
Identity = 92/184 (50.00%), Postives = 122/184 (66.30%), Query Frame = 0
Query:  141 RTVSDVQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQKL--PEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVFMLILAFAAFVLSLT 322
            ++V DV  WL   G+ +Y   F  NEVDG IL TL++EELRD+L V NL+HRR++  AI DL+ +++   A +   PE G IL+HLSNVRTYHSWLR+GIQ    AV TLRL+P FR   + +AS+ Y  + G+   +YG+YRY+ VI MI++S      Y PD VGV  ML+L+ AA  L LT
Sbjct:   76 QSVEDVADWLKRQGYPEYVDAFRFNEVDGAILTTLSTEELRDELHVCNLKHRRDLLAAI-DLLVDQSGMVAPRETPPEDGWILNHLSNVRTYHSWLRLGIQLFSLAVATLRLTPVFRPKGITTASAFYNCLCGVGLFLYGIYRYRQVILMIDNSSQHDRFYKPDYVGVYGMLVLSLAAGALVLT 258          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A7S1XIP6 (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIP6_9RHOD)

HSP 1 Score: 158 bits (400), Expect = 2.680e-44
Identity = 75/134 (55.97%), Postives = 100/134 (74.63%), Query Frame = 0
Query:  140 VRTVSDVQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTRLISASSVYFAVVGIA 273
            +    DV +WL   G+ +Y   F TNEV+G ILKTL+SEELRDDLGV+ LRHRR+I DAI +LV+E  P     LPEHGR+LDHLSNVRTYHSW+R+GIQ L  ++ TLRL+P +R+  L++AS++ F  +G++
Sbjct:   35 ITNADDVAEWLRALGYPEYVEAFRTNEVNGEILKTLSSEELRDDLGVSVLRHRRDILDAINELVRESVPVQRDALPEHGRVLDHLSNVRTYHSWVRIGIQILALSIGTLRLAPVYRDKTLVTASAMTFGFMGVS 168          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A1X6PDD2 (SAM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDD2_PORUM)

HSP 1 Score: 123 bits (309), Expect = 5.520e-30
Identity = 78/196 (39.80%), Postives = 112/196 (57.14%), Query Frame = 0
Query:  137 VPKVRTVSDVQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQK---------LPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLS----PNFRNT--RLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVF-MLILAFAA 316
            +P + T S+V  W+SD GF +YAP FL + V G+IL++LT+E+LRD+LGV  LRHRR +  AI  L  EE   T            LPE GR+L H+SNVRT HSW R+ +Q L  A   +RL+       ++   R + A+   F    +   VYG +R+  V  +++S   +++ + PD  GV+F  LIL F A
Sbjct:   22 LPALDTPSEVVAWVSDLGFPEYAPAFLDHAVSGVILRSLTTEDLRDELGVKPLRHRRALIAAIDHLNSEETAGTPHAGLVTGTFSALPEFGRMLTHMSNVRTVHSWQRLAVQQLILAAGVVRLALVELKEEKDVLYRFVLAACSAFCGACVLFAVYGGWRFLKVTSILDSDKRASSKFYPDLAGVIFSQLILHFVA 217          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A7S1TI00 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TI00_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 5.650e-27
Identity = 59/115 (51.30%), Postives = 74/115 (64.35%), Query Frame = 0
Query:  209 PTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVFMLILAFAAFVLSLTI 323
            P    LPEHGRIL+HLSNVRTYHSW+RVG+Q L ++V  LRL P  R   + +A S   A+ GI  L Y  +RYK VI MIE+SG +   Y PD  GVV  L++     VL++TI
Sbjct:   10 PPRDTLPEHGRILNHLSNVRTYHSWVRVGVQLLAYSVAFLRLIPIQRGKDITTAFSFAIALSGILFLTYAAHRYKLVIQMIENSGQNNQAYQPDIFGVVISLVILSILSVLTITI 124          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A7S3EMN2 (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EMN2_9RHOD)

HSP 1 Score: 108 bits (269), Expect = 1.340e-23
Identity = 62/161 (38.51%), Postives = 88/161 (54.66%), Query Frame = 0
Query:  143 VSDVQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDR 303
            V DV  W++  G+ +YA  F+ NEVDG  LKT+T +ELR+++GVT  +HR +I   +  L+   +      +PE GR+L  LSNVRTY SW  VGIQ   F+V  +RL P  R   L++  S++ AV  I        R  +    +    PS N+  P R
Sbjct:   76 VDDVVDWINAIGYPEYANKFVENEVDGRTLKTITQQELREEIGVTIPKHRSDILRRLDGLIMSTSRAQLDPIPEIGRVLSLLSNVRTYQSWTLVGIQLFIFSVGYMRLGPLIRPVWLVATGSLFAAVSAIGVFTVRSGRNNSSAYPLGRKQPSPNS-GPSR 235          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A7S3ECN3 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECN3_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 7.120e-18
Identity = 61/176 (34.66%), Postives = 93/176 (52.84%), Query Frame = 0
Query:  146 VQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFR----NTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVFMLILAFAAF 317
            V +WL   G   Y+  F+   VD  +LK+L+ ++LRD+LGVTN+  RR I + I  L+  +    A  LPE GRIL HL NVR +++W+R  +Q L FAV       NF     +   I   ++   +V I  L+ G +RY  +  +  S   + N   P  +G++ +L+ A A F
Sbjct:   38 VVEWLERIGMGSYSAPFIEQTVDVSLLKSLSLKDLRDELGVTNMSDRRRIFNGILMLLSRDVDKYA--LPEDGRILTHLFNVRVFNAWIRCAVQLLIFAVAV-----NFLVFCDDVTFIRNCAIGACIVAIVFLLVGFWRYFVIHRV--SKRVNYNMLVPSDIGLIPVLVSAAATF 204          
BLAST of Ggra6605.t1 vs. uniprot
Match: A0A2V3IUE9 (DUF202 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUE9_9FLOR)

HSP 1 Score: 80.5 bits (197), Expect = 3.080e-14
Identity = 65/202 (32.18%), Postives = 102/202 (50.50%), Query Frame = 0
Query:  126 LSRAPSSATSSVPKVRTVSD---VQKWLSDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAICDLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRLSPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYSPDRVGVVFMLILAFAAFVLSLTIL 324
            L+R  SS  SS P+   V D   VQK L  +G + Y P+F  + +   +L++L++ ELRD++ +  L HRR+       ++    P  +  +P  G IL HLSNVRT HSW+R   Q +  ++   RL    R+ R+    ++    +G    VYG +RY  V+  +E+       +S D VG V  L ++     L L +L
Sbjct:   11 LTRHRSSRHSS-PQQDAVLDAPFVQK-LHQNGLAAYVPLFEAHNLSEHVLQSLSNAELRDEVRMNVLAHRRK-------MLSLTQPARSCGVPVFGAILVHLSNVRTCHSWIRTTFQAVILSLAVSRLGA-LRDERIALGVAIGICCMGAVHSVYGGWRYLAVMKRVENG----MRFSADTVGAVLALCVSLCVAALVLLVL 198          
The following BLAST results are available for this feature:
BLAST of Ggra6605.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2V3J4676.820e-9271.14SAM domain-containing protein n=1 Tax=Gracilariops... [more]
A0A1X6P5I19.140e-6655.22SAM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S2ZTG32.940e-5249.24Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YSG08.770e-4750.00SAM domain-containing protein n=1 Tax=Porphyridium... [more]
A0A7S1XIP62.680e-4455.97Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A1X6PDD25.520e-3039.80SAM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A7S1TI005.650e-2751.30Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S3EMN21.340e-2338.51Hypothetical protein n=4 Tax=Rhodosorus marinus Ta... [more]
A0A7S3ECN37.120e-1834.66Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IUE93.080e-1432.18DUF202 domain-containing protein n=1 Tax=Gracilari... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 138..205
e-value: 1.8E-11
score: 54.1
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 142..200
e-value: 2.4E-13
score: 50.3
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 141..205
score: 15.694577
IPR003807Domain of unknown function DUF202PFAMPF02656DUF202coord: 222..285
e-value: 1.4E-10
score: 41.5
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 142..208
e-value: 5.1E-17
score: 64.0
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 141..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..232
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 233..252
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 259..280
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 327..328
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 281..303
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 304..326
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 253..258
NoneNo IPR availableCDDcd09487SAM_superfamilycoord: 145..199
e-value: 1.47622E-13
score: 62.6421
NoneNo IPR availableTMHMMTMhelixcoord: 259..281
NoneNo IPR availableTMHMMTMhelixcoord: 304..326

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:539309..540295 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6605.t1Ggra6605.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 539309..540295 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6605.t1 ID=Ggra6605.t1|Name=Ggra6605.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MAEGRVSDATDGGTRRVDGDALDEGLGRSGALASQFNGLLRSAPHDCRAC
LHVPRARAYSARVSGALRVAGCHVHTVRLAPLAWRAVPKFSVAVPPSLDD
ATALREGVPWRRCGCAMAPPPPPLPLSRAPSSATSSVPKVRTVSDVQKWL
SDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAIC
DLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRL
SPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYS
PDRVGVVFMLILAFAAFVLSLTILAIRN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR003807DUF202
IPR013761SAM/pointed_sf