Ggra6605.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6605.t1
Unique NameGgra6605.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:539309..540295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog113395.AXAI01000002_gene5249
PFAMsAAA_16,DZR,Guanylate_cyc,SAM_1
Max annot lvl28211|Alphaproteobacteria
Evalue6.49e-06
EggNOG OGsCOG2114@1|root,COG3899@1|root,COG2114@2|Bacteria,COG3899@2|Bacteria,1MUDT@1224|Proteobacteria,2TQVN@28211|Alphaproteobacteria,3JTQ7@41294|Bradyrhizobiaceae
DescriptionAdenylate and Guanylate cyclase catalytic domain
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6605Ggra6605Gracilaria gracilis GNS1m malegenetig00000081_pilon 539309..540295 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6605.t1.stop1Ggra6605.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 539309..539311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6605.t1.CDS1Ggra6605.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 539309..540295 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6605.t1.exon1Ggra6605.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 539309..540295 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6605.t1.start1Ggra6605.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 540293..540295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6605.t1Ggra6605.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 539309..540295 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6605.t1 ID=Ggra6605.t1|Name=Ggra6605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MAEGRVSDATDGGTRRVDGDALDEGLGRSGALASQFNGLLRSAPHDCRAC
LHVPRARAYSARVSGALRVAGCHVHTVRLAPLAWRAVPKFSVAVPPSLDD
ATALREGVPWRRCGCAMAPPPPPLPLSRAPSSATSSVPKVRTVSDVQKWL
SDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAIC
DLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRL
SPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYS
PDRVGVVFMLILAFAAFVLSLTILAIRN*
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spliced messenger RNA

>Ggra6605.t1 ID=Ggra6605.t1|Name=Ggra6605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000081_pilon:539309..540295- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAAGGACGAGTATCGGACGCGACGGACGGTGGTACGAGGCGGGT
CGATGGCGACGCGCTTGACGAGGGACTGGGGCGATCCGGCGCACTCGCAT
CGCAGTTCAATGGCCTTCTCCGATCTGCGCCTCACGACTGCCGTGCGTGC
TTACACGTGCCGCGTGCTCGCGCTTACAGCGCGCGCGTTTCTGGCGCATT
GCGCGTTGCGGGTTGCCACGTGCACACCGTTCGTCTGGCACCGCTTGCGT
GGCGCGCCGTGCCCAAGTTTTCAGTTGCTGTTCCACCGTCCCTGGACGAC
GCGACGGCCTTGCGAGAGGGCGTGCCATGGCGGAGATGCGGATGTGCAAT
GGCCCCGCCTCCGCCGCCGCTGCCGCTGTCGCGCGCGCCATCTTCCGCCA
CGTCTTCAGTTCCGAAGGTGCGCACGGTCTCGGACGTGCAGAAGTGGCTG
TCTGACCATGGCTTCTCGCAGTACGCGCCCGTCTTCCTCACCAACGAGGT
GGACGGCCTCATTCTCAAAACGCTCACATCCGAGGAGCTTCGCGACGATT
TGGGCGTCACAAACCTGCGTCATCGCCGCGAGATTCGCGACGCAATCTGT
GATCTGGTCAAGGAAGAGGCCCCTCCTACAGCCCAGAAGCTGCCCGAACA
CGGCCGTATTCTAGACCATCTCTCCAACGTTCGAACTTACCACAGTTGGC
TACGAGTCGGAATTCAGTTCCTGGGCTTTGCTGTTGTCACTTTAAGACTT
TCGCCCAACTTTCGTAACACCCGACTCATCAGCGCCTCCTCTGTTTACTT
TGCTGTCGTAGGCATTGCGGCGTTAGTGTACGGCGTATACCGCTACAAAA
CAGTTATTGACATGATTGAATCGTCTGGCCCTTCCACAAACACTTACAGC
CCAGACCGTGTAGGCGTTGTGTTCATGCTCATTCTGGCATTCGCAGCATT
TGTCCTCTCTTTAACAATACTTGCAATACGAAACTAA
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protein sequence of Ggra6605.t1

>Ggra6605.t1 ID=Ggra6605.t1|Name=Ggra6605.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MAEGRVSDATDGGTRRVDGDALDEGLGRSGALASQFNGLLRSAPHDCRAC
LHVPRARAYSARVSGALRVAGCHVHTVRLAPLAWRAVPKFSVAVPPSLDD
ATALREGVPWRRCGCAMAPPPPPLPLSRAPSSATSSVPKVRTVSDVQKWL
SDHGFSQYAPVFLTNEVDGLILKTLTSEELRDDLGVTNLRHRREIRDAIC
DLVKEEAPPTAQKLPEHGRILDHLSNVRTYHSWLRVGIQFLGFAVVTLRL
SPNFRNTRLISASSVYFAVVGIAALVYGVYRYKTVIDMIESSGPSTNTYS
PDRVGVVFMLILAFAAFVLSLTILAIRN*
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mRNA from alignment at tig00000081_pilon:539309..540295-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6605.t1 ID=Ggra6605.t1|Name=Ggra6605.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000081_pilon:539309..540295- (Gracilaria gracilis GNS1m male)
ATGGCGGAAGGACGAGTATCGGACGCGACGGACGGTGGTACGAGGCGGGT
CGATGGCGACGCGCTTGACGAGGGACTGGGGCGATCCGGCGCACTCGCAT
CGCAGTTCAATGGCCTTCTCCGATCTGCGCCTCACGACTGCCGTGCGTGC
TTACACGTGCCGCGTGCTCGCGCTTACAGCGCGCGCGTTTCTGGCGCATT
GCGCGTTGCGGGTTGCCACGTGCACACCGTTCGTCTGGCACCGCTTGCGT
GGCGCGCCGTGCCCAAGTTTTCAGTTGCTGTTCCACCGTCCCTGGACGAC
GCGACGGCCTTGCGAGAGGGCGTGCCATGGCGGAGATGCGGATGTGCAAT
GGCCCCGCCTCCGCCGCCGCTGCCGCTGTCGCGCGCGCCATCTTCCGCCA
CGTCTTCAGTTCCGAAGGTGCGCACGGTCTCGGACGTGCAGAAGTGGCTG
TCTGACCATGGCTTCTCGCAGTACGCGCCCGTCTTCCTCACCAACGAGGT
GGACGGCCTCATTCTCAAAACGCTCACATCCGAGGAGCTTCGCGACGATT
TGGGCGTCACAAACCTGCGTCATCGCCGCGAGATTCGCGACGCAATCTGT
GATCTGGTCAAGGAAGAGGCCCCTCCTACAGCCCAGAAGCTGCCCGAACA
CGGCCGTATTCTAGACCATCTCTCCAACGTTCGAACTTACCACAGTTGGC
TACGAGTCGGAATTCAGTTCCTGGGCTTTGCTGTTGTCACTTTAAGACTT
TCGCCCAACTTTCGTAACACCCGACTCATCAGCGCCTCCTCTGTTTACTT
TGCTGTCGTAGGCATTGCGGCGTTAGTGTACGGCGTATACCGCTACAAAA
CAGTTATTGACATGATTGAATCGTCTGGCCCTTCCACAAACACTTACAGC
CCAGACCGTGTAGGCGTTGTGTTCATGCTCATTCTGGCATTCGCAGCATT
TGTCCTCTCTTTAACAATACTTGCAATACGAAACTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:539309..540295-

>Ggra6605.t1 ID=Ggra6605.t1|Name=Ggra6605.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000081_pilon:539309..540295- (Gracilaria gracilis GNS1m male)
ATGGCGGAAGGACGAGTATCGGACGCGACGGACGGTGGTACGAGGCGGGT
CGATGGCGACGCGCTTGACGAGGGACTGGGGCGATCCGGCGCACTCGCAT
CGCAGTTCAATGGCCTTCTCCGATCTGCGCCTCACGACTGCCGTGCGTGC
TTACACGTGCCGCGTGCTCGCGCTTACAGCGCGCGCGTTTCTGGCGCATT
GCGCGTTGCGGGTTGCCACGTGCACACCGTTCGTCTGGCACCGCTTGCGT
GGCGCGCCGTGCCCAAGTTTTCAGTTGCTGTTCCACCGTCCCTGGACGAC
GCGACGGCCTTGCGAGAGGGCGTGCCATGGCGGAGATGCGGATGTGCAAT
GGCCCCGCCTCCGCCGCCGCTGCCGCTGTCGCGCGCGCCATCTTCCGCCA
CGTCTTCAGTTCCGAAGGTGCGCACGGTCTCGGACGTGCAGAAGTGGCTG
TCTGACCATGGCTTCTCGCAGTACGCGCCCGTCTTCCTCACCAACGAGGT
GGACGGCCTCATTCTCAAAACGCTCACATCCGAGGAGCTTCGCGACGATT
TGGGCGTCACAAACCTGCGTCATCGCCGCGAGATTCGCGACGCAATCTGT
GATCTGGTCAAGGAAGAGGCCCCTCCTACAGCCCAGAAGCTGCCCGAACA
CGGCCGTATTCTAGACCATCTCTCCAACGTTCGAACTTACCACAGTTGGC
TACGAGTCGGAATTCAGTTCCTGGGCTTTGCTGTTGTCACTTTAAGACTT
TCGCCCAACTTTCGTAACACCCGACTCATCAGCGCCTCCTCTGTTTACTT
TGCTGTCGTAGGCATTGCGGCGTTAGTGTACGGCGTATACCGCTACAAAA
CAGTTATTGACATGATTGAATCGTCTGGCCCTTCCACAAACACTTACAGC
CCAGACCGTGTAGGCGTTGTGTTCATGCTCATTCTGGCATTCGCAGCATT
TGTCCTCTCTTTAACAATACTTGCAATACGAAACTAA
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