Ggra6602.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6602.t1
Unique NameGgra6602.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length125
Homology
BLAST of Ggra6602.t1 vs. uniprot
Match: Q7XY88 (Histone H2A (Fragment) n=3 Tax=Rhodymeniophycidae TaxID=2045261 RepID=Q7XY88_GRIJA)

HSP 1 Score: 228 bits (581), Expect = 5.360e-75
Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 0
Query:    1 MASKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            M+ K KKTSQSRSSKAGLQFPVGRI RFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLL GVTIASGGVLPNIHQVLMPRKK+KGDASQEV
Sbjct:   31 MSGKVKKTSQSRSSKAGLQFPVGRIDRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGGVTIASGGVLPNIHQVLMPRKKSKGDASQEV 154          
BLAST of Ggra6602.t1 vs. uniprot
Match: A0A2V3J1H0 (Histone H2A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H0_9FLOR)

HSP 1 Score: 222 bits (566), Expect = 3.600e-73
Identity = 113/119 (94.96%), Postives = 115/119 (96.64%), Query Frame = 0
Query:    6 KKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            KK +QSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLL  VTIASGGVLPNIHQVLMP KK+KGDASQEV
Sbjct:    4 KKAAQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHQVLMPHKKSKGDASQEV 122          
BLAST of Ggra6602.t1 vs. uniprot
Match: R7QQ41 (Histone H2A n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ41_CHOCR)

HSP 1 Score: 219 bits (558), Expect = 7.270e-72
Identity = 111/124 (89.52%), Postives = 117/124 (94.35%), Query Frame = 0
Query:    1 MASKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            ++ K KKTSQ+RSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKK+RIIPRHIQLAVRNDEELNKLL  VTIASGGV+PNIH VLMPRKK+K D SQEV
Sbjct:    5 ISKKVKKTSQTRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGSVTIASGGVIPNIHTVLMPRKKSKSDPSQEV 128          
BLAST of Ggra6602.t1 vs. uniprot
Match: A0A7S0G427 (Histone H2A n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G427_9RHOD)

HSP 1 Score: 207 bits (527), Expect = 3.870e-67
Identity = 105/120 (87.50%), Postives = 112/120 (93.33%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQE 123
            KTKK++ SR+ KAGLQFPVGRIHR LRKGGYADRVGAGAPVY+AAV+EYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIA+GGVLPNIH VL P+KK   DASQE
Sbjct:    8 KTKKSAVSRTKKAGLQFPVGRIHRHLRKGGYADRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIAAGGVLPNIHSVLTPKKKEAKDASQE 127          
BLAST of Ggra6602.t1 vs. uniprot
Match: A0A5J4Z1G0 (Histone H2A n=2 Tax=Porphyridiaceae TaxID=2799 RepID=A0A5J4Z1G0_PORPP)

HSP 1 Score: 205 bits (522), Expect = 2.100e-66
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGDASQEV 124
            K +K + SR+ KAGLQFPVGRIHR L+KGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLLSGVTIA+GGVLPNIH VLMP+KK K DASQE+
Sbjct:    7 KERKAAMSRTKKAGLQFPVGRIHRHLKKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHVQLAVRNDEELNKLLSGVTIAAGGVLPNIHAVLMPKKKGK-DASQEL 126          
BLAST of Ggra6602.t1 vs. uniprot
Match: A0A7J7IHZ2 (Histone H2A n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHZ2_9RHOD)

HSP 1 Score: 196 bits (499), Expect = 5.030e-63
Identity = 94/111 (84.68%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    9 SQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGD 119
            ++SRSSKAGLQFPVGR+HR+LR GGYA+R+GAGAPVY+AAVMEYLTAEVLELAGNAARDNKKTRI+PRHIQLA+RNDEELNKLL+ VTIASGGVLPNIH VL+P+KK KG+
Sbjct:    7 AKSRSSKAGLQFPVGRVHRYLRDGGYAERIGAGAPVYLAAVMEYLTAEVLELAGNAARDNKKTRIVPRHIQLAIRNDEELNKLLANVTIASGGVLPNIHAVLLPKKKGKGE 117          
BLAST of Ggra6602.t1 vs. uniprot
Match: M1V984 (Histone H2A n=2 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V984_CYAM1)

HSP 1 Score: 197 bits (501), Expect = 5.170e-62
Identity = 95/111 (85.59%), Postives = 107/111 (96.40%), Query Frame = 0
Query:    9 SQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGD 119
            ++SRSSKAGLQFPVGR+HR+LR GGYA+R+GAGAPVY+AAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLA+RNDEELNKLL+ VTIASGGVLPNIH VL+P+KK KG+
Sbjct:  101 AKSRSSKAGLQFPVGRVHRYLRDGGYAERIGAGAPVYLAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAIRNDEELNKLLADVTIASGGVLPNIHAVLLPKKKAKGE 211          
BLAST of Ggra6602.t1 vs. uniprot
Match: C3ZNL5 (Histone H2A n=6 Tax=Branchiostoma TaxID=7737 RepID=C3ZNL5_BRAFL)

HSP 1 Score: 194 bits (492), Expect = 7.360e-62
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTK 117
            K +  ++SRSS+AGLQFPVGR+HRFLRKG YA+RVGAGAPVY+AAV+EYLTAE+LELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLLSGVTIA GGVLPNIH VL+P+K +K
Sbjct:    9 KARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIHAVLLPKKTSK 122          
BLAST of Ggra6602.t1 vs. uniprot
Match: C3Z7D8 (Histone H2A n=8 Tax=Branchiostoma TaxID=7737 RepID=C3Z7D8_BRAFL)

HSP 1 Score: 192 bits (487), Expect = 4.400e-61
Identity = 93/111 (83.78%), Postives = 105/111 (94.59%), Query Frame = 0
Query:    4 KTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRK 114
            K +  ++SRSS+AGLQFPVGR+HRFLRKG YA+RVGAGAPVY+AAV+EYLTAE+LELAGNAARDNKKTRIIPRH+QLAVRNDEELNKLLSGVTIA GGVLPNIH VL+P+K
Sbjct:    9 KARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIHAVLLPKK 119          
BLAST of Ggra6602.t1 vs. uniprot
Match: M2WXY0 (Histone H2A n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WXY0_GALSU)

HSP 1 Score: 191 bits (486), Expect = 5.490e-61
Identity = 95/119 (79.83%), Postives = 106/119 (89.08%), Query Frame = 0
Query:    1 MASKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVMEYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASGGVLPNIHQVLMPRKKTKGD 119
            MA K +   +SRSSKAGLQFPVGR+ RFL+ G YA+RVGAGAPVY+AAV+EYLTAEVLELAGNAARDNKKTRI+PRHIQLAVRNDEELNKLL GVTIASGGVLPN+H  L+P+KK K D
Sbjct:    1 MAPKERSKPKSRSSKAGLQFPVGRVSRFLKNGNYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELNKLLGGVTIASGGVLPNVHPNLLPKKKAKED 119          
The following BLAST results are available for this feature:
BLAST of Ggra6602.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XY885.360e-7594.35Histone H2A (Fragment) n=3 Tax=Rhodymeniophycidae ... [more]
A0A2V3J1H03.600e-7394.96Histone H2A n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
R7QQ417.270e-7289.52Histone H2A n=2 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A7S0G4273.870e-6787.50Histone H2A n=1 Tax=Rhodosorus marinus TaxID=10192... [more]
A0A5J4Z1G02.100e-6686.78Histone H2A n=2 Tax=Porphyridiaceae TaxID=2799 Rep... [more]
A0A7J7IHZ25.030e-6384.68Histone H2A n=1 Tax=Cyanidiococcus yangmingshanens... [more]
M1V9845.170e-6285.59Histone H2A n=2 Tax=Cyanidioschyzon merolae (strai... [more]
C3ZNL57.360e-6282.46Histone H2A n=6 Tax=Branchiostoma TaxID=7737 RepID... [more]
C3Z7D84.400e-6183.78Histone H2A n=8 Tax=Branchiostoma TaxID=7737 RepID... [more]
M2WXY05.490e-6179.83Histone H2A n=2 Tax=Galdieria sulphuraria TaxID=13... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 8..30
score: 70.77
coord: 52..65
score: 90.54
coord: 94..112
score: 71.68
coord: 37..52
score: 81.73
coord: 66..80
score: 81.4
IPR002119Histone H2ASMARTSM00414h2a4coord: 1..117
e-value: 3.6E-78
score: 275.7
IPR002119Histone H2APANTHERPTHR23430HISTONE H2Acoord: 3..119
IPR002119Histone H2ACDDcd00074H2Acoord: 2..114
e-value: 2.94284E-73
score: 211.81
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 1..123
e-value: 1.4E-64
score: 217.7
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 10..114
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 2..83
e-value: 4.0E-18
score: 66.0
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 86..118
e-value: 3.3E-19
score: 68.3
NoneNo IPR availablePANTHERPTHR23430:SF222HISTONE H2Acoord: 3..119
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 16..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:536464..536838 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6602.t1Ggra6602.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 536464..536838 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6602.t1 ID=Ggra6602.t1|Name=Ggra6602.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=125bp
MASKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVM
EYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASG
GVLPNIHQVLMPRKKTKGDASQEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR009072Histone-fold
IPR007125Histone_H2A/H2B/H3
IPR032454Histone_H2A_C
IPR032458Histone_H2A_CS