Ggra6602.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6602.t1
Unique NameGgra6602.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:536464..536838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMN170CT
PFAMsHistone,Histone_H2A_C
Max annot lvl2759|Eukaryota
KEGG koko:K11251,ko:K15001
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Evalue2.58e-62
EggNOG OGsCOG5262@1|root,KOG1756@2759|Eukaryota
DescriptionHistone H2A
COG categoryB
BRITEko00000,ko00001,ko00199,ko01000,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6602Ggra6602Gracilaria gracilis GNS1m malegenetig00000081_pilon 536464..536838 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6602.t1.stop1Ggra6602.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 536464..536466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6602.t1.CDS1Ggra6602.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 536464..536838 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6602.t1.exon1Ggra6602.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 536464..536838 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6602.t1.start1Ggra6602.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 536836..536838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6602.t1Ggra6602.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 536464..536838 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6602.t1 ID=Ggra6602.t1|Name=Ggra6602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=125bp
MASKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVM
EYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASG
GVLPNIHQVLMPRKKTKGDASQEV*
back to top

spliced messenger RNA

>Ggra6602.t1 ID=Ggra6602.t1|Name=Ggra6602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000081_pilon:536464..536838- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGCAAGACTAAGAAGACTTCGCAGTCCAGGTCGTCCAAGGCCGG
ACTTCAGTTCCCCGTCGGTCGTATTCATCGCTTCCTTCGAAAAGGAGGGT
ACGCCGACCGTGTGGGCGCCGGGGCGCCGGTGTACATGGCGGCGGTGATG
GAATATCTGACGGCGGAGGTTTTGGAACTGGCTGGAAACGCTGCACGTGA
CAACAAGAAGACCAGGATCATTCCGCGTCACATTCAGCTGGCCGTTCGTA
ACGATGAGGAGCTGAACAAGCTGCTGAGTGGGGTGACGATCGCGTCGGGT
GGTGTGCTGCCCAACATTCACCAGGTGCTGATGCCTAGGAAGAAGACTAA
GGGTGATGCATCACAAGAGGTTTAA
back to top

protein sequence of Ggra6602.t1

>Ggra6602.t1 ID=Ggra6602.t1|Name=Ggra6602.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=125bp
MASKTKKTSQSRSSKAGLQFPVGRIHRFLRKGGYADRVGAGAPVYMAAVM
EYLTAEVLELAGNAARDNKKTRIIPRHIQLAVRNDEELNKLLSGVTIASG
GVLPNIHQVLMPRKKTKGDASQEV*
back to top

mRNA from alignment at tig00000081_pilon:536464..536838-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6602.t1 ID=Ggra6602.t1|Name=Ggra6602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000081_pilon:536464..536838- (Gracilaria gracilis GNS1m male)
ATGGCAAGCAAGACTAAGAAGACTTCGCAGTCCAGGTCGTCCAAGGCCGG
ACTTCAGTTCCCCGTCGGTCGTATTCATCGCTTCCTTCGAAAAGGAGGGT
ACGCCGACCGTGTGGGCGCCGGGGCGCCGGTGTACATGGCGGCGGTGATG
GAATATCTGACGGCGGAGGTTTTGGAACTGGCTGGAAACGCTGCACGTGA
CAACAAGAAGACCAGGATCATTCCGCGTCACATTCAGCTGGCCGTTCGTA
ACGATGAGGAGCTGAACAAGCTGCTGAGTGGGGTGACGATCGCGTCGGGT
GGTGTGCTGCCCAACATTCACCAGGTGCTGATGCCTAGGAAGAAGACTAA
GGGTGATGCATCACAAGAGGTTTAA
back to top

Coding sequence (CDS) from alignment at tig00000081_pilon:536464..536838-

>Ggra6602.t1 ID=Ggra6602.t1|Name=Ggra6602.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=375bp|location=Sequence derived from alignment at tig00000081_pilon:536464..536838- (Gracilaria gracilis GNS1m male)
ATGGCAAGCAAGACTAAGAAGACTTCGCAGTCCAGGTCGTCCAAGGCCGG
ACTTCAGTTCCCCGTCGGTCGTATTCATCGCTTCCTTCGAAAAGGAGGGT
ACGCCGACCGTGTGGGCGCCGGGGCGCCGGTGTACATGGCGGCGGTGATG
GAATATCTGACGGCGGAGGTTTTGGAACTGGCTGGAAACGCTGCACGTGA
CAACAAGAAGACCAGGATCATTCCGCGTCACATTCAGCTGGCCGTTCGTA
ACGATGAGGAGCTGAACAAGCTGCTGAGTGGGGTGACGATCGCGTCGGGT
GGTGTGCTGCCCAACATTCACCAGGTGCTGATGCCTAGGAAGAAGACTAA
GGGTGATGCATCACAAGAGGTTTAA
back to top