Ggra6599.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6599.t1
Unique NameGgra6599.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length367
Homology
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A2V3J407 (Reactive Intermediate Deaminase A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J407_9FLOR)

HSP 1 Score: 383 bits (984), Expect = 4.350e-130
Identity = 209/297 (70.37%), Postives = 235/297 (79.12%), Query Frame = 0
Query:   72 PDSLHWGEKFVHPQILVIEHYF-SRSPAISRNHLFARRQRITAVMTENVRSNPDIKRLQPGSRFNQIVVHDGVVYLAGQVARGT-DGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAALPSPAKVISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKAIVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAKQLPKSALVEIECVAKL 366
            P+   +   FV    L   H+  S S A    H      R  AV+T+++    DIKR  PG RFNQ+VV++G+VYLAGQVAR T DGSV AQTR ILAKID LLE AGT+KSRLLT NIW+ D+SK  EMN EW KWVDKDNMPVRACVQS+L D+SITVEIQATAAL SPA ++ T+EAAAAVGPYNQ VVV DGTVYVSGCIGL+P+T +MAG SVEEQT+QALQN+KAIVEA GA+VH IVKTTILLDDI DFAAVNAIYS FFEGG VPARSCFAAKQLPKSALVEIE +AKL
Sbjct:    3 PNDNAFVSSFVPRNALSATHFVRSVSWAWRAQHRTRSPARTKAVITDSMAGASDIKRFLPGPRFNQVVVYNGIVYLAGQVARDTPDGSVGAQTRQILAKIDRLLETAGTNKSRLLTANIWMTDISKAPEMNEEWAKWVDKDNMPVRACVQSSLLDDSITVEIQATAALSSPATIVKTEEAAAAVGPYNQAVVVDDGTVYVSGCIGLLPKTGIMAGASVEEQTEQALQNIKAIVEAVGASVHSIVKTTILLDDINDFAAVNAIYSRFFEGGAVPARSCFAAKQLPKSALVEIEAIAKL 299          
BLAST of Ggra6599.t1 vs. uniprot
Match: R7QTC6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTC6_CHOCR)

HSP 1 Score: 317 bits (811), Expect = 1.390e-104
Identity = 160/246 (65.04%), Postives = 192/246 (78.05%), Query Frame = 0
Query:  121 SNPDIKRLQPGSRFNQIVVHDGVVYLAGQVARGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAALPSPAKVISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKAIVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAKQLPKSALVEIECVAKL 366
            S+PDI+RLQPG+RF+Q  +H+G VYLAGQV R  D S   QT  IL K+D+LL +AGTDKSR+L+  +W+ D+++  EMN  WD WVDK NMPVRA VQS L  + ITVEI   AALPSPAK+++TD+AAAAVGPYNQGVVV DGTVYVSGCIGL+P    M    VE QT+QAL+N++AI+ + GA  +DIVKT ILLDD+ADFA VNAIY +FF  G VPARSCFAAK+LPK ALVEIE  AKL
Sbjct:    2 SHPDIRRLQPGARFHQATIHNGTVYLAGQVGRAADRSTYGQTEEILRKVDALLAEAGTDKSRVLSATVWMTDIAEADEMNRAWDAWVDKQNMPVRATVQSRLVADDITVEIGVIAALPSPAKILATDKAAAAVGPYNQGVVVDDGTVYVSGCIGLLPGDGGMVDGGVEGQTRQALENIRAILNSTGAGPNDIVKTGILLDDMADFAKVNAIYKDFFGAGDVPARSCFAAKELPKGALVEIEATAKL 247          
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A5J4Z3P0 (Reactive Intermediate Deaminase A, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3P0_PORPP)

HSP 1 Score: 254 bits (650), Expect = 2.000e-79
Identity = 131/237 (55.27%), Postives = 178/237 (75.11%), Query Frame = 0
Query:  134 FNQIVVHDGVVYLAGQVARGT--DGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAALPSP-AKVISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKAIVEAAGAT-VHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAKQLPKSALVEIECVAKL 366
            FNQ+VVH+G VY++GQV        +VA QT+++L KID+LL     DKSR+L+ +IW++D+S  +EMN EW++W+D  N PVRA V++ L    + VEIQ TAALP   +++++TD AAAAVGPYNQG+   DG +++SGCIGL P+T   AG ++EEQTKQ L N+ AI++A GA     I+KTTILLDD+ADFA VN +YSE+F+G  VPAR+CFAAK LPK+ALVEIE +A++
Sbjct:   72 FNQLVVHNGTVYISGQVTADATKQTTVADQTKSVLDKIDNLLASVNIDKSRILSASIWLSDISTVAEMNKEWEQWLDVQNKPVRATVEAKLVRPELLVEIQVTAALPPRRSEIVATDLAAAAVGPYNQGIRTADGMLFISGCIGLSPKTGDFAGTTIEEQTKQVLANLDAILKAGGAKGPEQIIKTTILLDDMADFATVNTLYSEYFKGSRVPARACFAAKTLPKNALVEIEAIAEV 308          
BLAST of Ggra6599.t1 vs. uniprot
Match: M2XYU2 (TdcF protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XYU2_GALSU)

HSP 1 Score: 249 bits (635), Expect = 1.030e-76
Identity = 132/259 (50.97%), Postives = 174/259 (67.18%), Query Frame = 0
Query:  110 RITAVMT-ENVRSNPDIKRLQPGSRFNQIVVHDGVVYLAGQVARGT-DGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAALPSPAKVISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKAIVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAKQLPKSALVEIECVAKL 366
            R+++ +T  +V S   IKR + G  FNQ+V ++ V YLAGQVA  T D +V  Q   I A+ID LL+ AGTDK+RLL+ N+W+ D+   +E N  W+ W+D  N PVRA V++ L    + VE+Q TAALP     + T+ AAAAVGPY+QG+V+ +GT+YVSGCIGL P+T  +   +V  Q KQAL N+K I+ AAGAT   + KT +LL +I DF  VN IY  FF  G  P+RSCFA K+LPK ALVE ECVA+L
Sbjct:   83 RMSSTLTGSDVVSQSSIKRYEEGPLFNQMVTYNDVAYLAGQVAPDTSDQTVKGQAEQIFARIDQLLKVAGTDKTRLLSANVWLKDIQHVAEFNEAWNSWIDSTNKPVRATVEAKLVRPELLVEVQVTAALPRRLTPVQTNLAAAAVGPYHQGIVLDNGTIYVSGCIGLNPQTGSLIDSTVVGQAKQALSNMKHILRAAGATPERVTKTLVLLKNIEDFERVNEIYKSFFNNGAYPSRSCFAVKELPKGALVEFECVAQL 341          
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A7S1XBY1 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBY1_9RHOD)

HSP 1 Score: 241 bits (616), Expect = 5.910e-75
Identity = 135/249 (54.22%), Postives = 169/249 (67.87%), Query Frame = 0
Query:  123 PDIKRLQPG----SRFNQIVVHDGVVYLAGQVARGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDK-DNMPVRACVQSTLADNSITVEIQATAALPSPAKVISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKAIVEAAGATV-HDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAKQLPKSALVEIECVAK 365
            P I+R+  G    + F+ + VH   VY+AGQVA      V  QTR +L KI+  L + GTDK+ LL   IW+ D+ +   MN E+D+W+   +  PVRA VQ+ + D SI VEI ATAA PS AKVI T+EAAAAVGPYNQG+   DG ++ SGCIGL P+T   AG+SVEEQT Q L+N+ AI++A GA    DI+KTTILLDDI DFA VNAIY  FF  G VPAR+ F+AK LPK A VEIE +A+
Sbjct:    7 PGIRRIGSGPPGLNLFSSVTVHGETVYIAGQVADDRREDVRGQTRQVLGKIEERLREGGTDKAHLLQVMIWLKDIGEVGVMNEEYDQWLAGIEGRPVRATVQAEMVDPSIRVEIMATAARPSRAKVIETEEAAAAVGPYNQGIRTADGLIFASGCIGLDPKTGEFAGESVEEQTHQVLRNLWAILKAGGAAEPSDIIKTTILLDDIGDFAKVNAIYQNFFGSGRVPARATFSAKALPKGAKVEIEAIAQ 255          
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A5J4YVR4 (RutC family protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVR4_PORPP)

HSP 1 Score: 184 bits (468), Expect = 1.090e-50
Identity = 109/262 (41.60%), Postives = 160/262 (61.07%), Query Frame = 0
Query:  125 IKRLQPGSRFNQIVVHDGVVYLAGQVA--RGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAA---------LPSPA--KVISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKAIVE--AAGATVHDIVKTTILLDDIADFAAVNAIYSEFF----EGG-PVPARSCFAAKQLPKSALVEIECVAKL 366
            I R +PG+ F+Q+VVH G++YLAGQV        +V  QT + LAKID LLE  G  KS +L+ ++W+AD++  +EMNA W+ WVD +  PVRA V++ L   ++ VE+Q  AA         LP     + + T+ A  AVGPY+Q VVV D  V+VSGC+GL P+T  +    +E Q  +AL N++A+++  A+G+    IV+ T+++ D+ DF  +N +Y  F     EG  P PAR+ F    LPK ALV I+ +A+L
Sbjct:  187 IVRYEPGTSFSQMVVHGGIIYLAGQVTDDEHQKTTVGEQTSSCLAKIDRLLEMGGGHKSSILSASVWLADIATVAEMNAVWNAWVDPECKPVRATVEAKLVRPTLLVEVQVVAAVGAADQSGALPKQPCLRSVQTELAGKAVGPYSQAVVVEDEYVFVSGCLGLDPKTDTLVDGGIETQAVRALANLEAVLKNSASGSVSPRIVRMTLMVKDMRDFGRINDLYGAFLNNYHEGQYPKPARTAFQVAALPKEALVMIDAIARL 448          
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A1X6PE35 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PE35_PORUM)

HSP 1 Score: 149 bits (375), Expect = 4.340e-40
Identity = 89/174 (51.15%), Postives = 111/174 (63.79%), Query Frame = 0
Query:  199 MNAEWDKWVDKDNMP-VRACVQSTLADNSITVEIQATAALPSPAKV--ISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVE----EQTKQALQNVKAIVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAKQLPKSALVEIECVAK 365
            MN  W  W+        RA V + L    + VE+  TAA+P P  V  ++TD AAAAVGPY+QGVVV  G VYVSGC+GL  R+    G  VE     QTKQAL N+ A++ AAG TVHD+VKT+I++ D+ DFAAVN +YSE   G   PAR+CF    LP  A+VEIEC+AK
Sbjct:    1 MNEAWAAWLGPTTPRCTRATVGAPLVRPELLVEVVVTAAIPPPVPVGRVATDGAAAAVGPYSQGVVVEGGLVYVSGCVGL--RSPADGGGLVEGGVVAQTKQALANMSAVLAAAGCTVHDVVKTSIMVTDMGDFAAVNGVYSEVM-GDAKPARACFGVAALPVGAVVEIECIAK 171          
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A2S6R4D1 (2-iminobutanoate/2-iminopropanoate deaminase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R4D1_9PROT)

HSP 1 Score: 135 bits (340), Expect = 1.120e-35
Identity = 68/112 (60.71%), Postives = 82/112 (73.21%), Query Frame = 0
Query:  125 IKRLQPGSRFNQIVVHDGVVYLAGQVARGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAA 236
            I R++PG R +Q VVH   VY AGQVA  +   VA QTR +LAKIDSLL +AG+DKS++L   IW+AD+SKFSEMN+ WD WVD DN PVRACV+S LA   + VEIQ  AA
Sbjct:    3 ITRIKPGPRMSQTVVHAHTVYTAGQVADDSSADVAGQTRQVLAKIDSLLAEAGSDKSKILKATIWLADISKFSEMNSVWDAWVDTDNPPVRACVESKLAVPELKVEIQVEAA 114          
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A2S6RH51 (2-iminobutanoate/2-iminopropanoate deaminase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin1 TaxID=2013103 RepID=A0A2S6RH51_9PROT)

HSP 1 Score: 132 bits (333), Expect = 1.210e-34
Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 0
Query:  125 IKRLQPGSRFNQIVVHDGVVYLAGQVARGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMNAEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAA 236
            I R++PG+R +Q VVH   VY AGQ+A  +   VA QTR +LAKID LL +AG+DKS++L   IW+ D+S+F+EMN+ WD WVD+DN PVRACV+STLA  +++VEI   AA
Sbjct:    3 ITRIKPGARMSQCVVHGDTVYTAGQIADDSSEDVAGQTRQVLAKIDGLLAEAGSDKSKILKATIWLTDISRFNEMNSVWDAWVDQDNPPVRACVESTLAMPALSVEIMVEAA 114          
BLAST of Ggra6599.t1 vs. uniprot
Match: A0A7S2YUJ4 (Hypothetical protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2YUJ4_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 1.190e-33
Identity = 68/125 (54.40%), Postives = 93/125 (74.40%), Query Frame = 0
Query:  242 KVISTDEAAAAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKAIVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAKQLPKSALVEIECVAKL 366
            +VI+TD+A AA+GPY+Q +  +  T+YVSGC+GL+P T  M G +  EQ +QAL N+ A++EA GA+   +VKT +LLDD+ DFAAVN +YS++F   P PARSCFA K LP  A VEIEC+A++
Sbjct:   47 EVITTDKAPAALGPYSQAIKTNQ-TLYVSGCLGLIPGTKDMKGPTAPEQAEQALDNMGAVLEAGGASYSSVVKTLVLLDDMDDFAAVNEVYSKYFPENP-PARSCFAVKTLPLGAKVEIECIAEV 169          
The following BLAST results are available for this feature:
BLAST of Ggra6599.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4074.350e-13070.37Reactive Intermediate Deaminase A, chloroplastic n... [more]
R7QTC61.390e-10465.04Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4Z3P02.000e-7955.27Reactive Intermediate Deaminase A, chloroplastic n... [more]
M2XYU21.030e-7650.97TdcF protein n=1 Tax=Galdieria sulphuraria TaxID=1... [more]
A0A7S1XBY15.910e-7554.22Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YVR41.090e-5041.60RutC family protein n=1 Tax=Porphyridium purpureum... [more]
A0A1X6PE354.340e-4051.15Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2S6R4D11.120e-3560.712-iminobutanoate/2-iminopropanoate deaminase n=1 T... [more]
A0A2S6RH511.210e-3456.252-iminobutanoate/2-iminopropanoate deaminase n=1 T... [more]
A0A7S2YUJ41.190e-3354.40Hypothetical protein n=2 Tax=Pycnococcus provasoli... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 248..365
e-value: 3.8E-35
score: 120.5
coord: 126..236
e-value: 3.6E-24
score: 85.1
IPR006056RidA familyTIGRFAMTIGR00004TIGR00004coord: 242..364
e-value: 5.2E-43
score: 144.2
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 240..365
e-value: 5.7E-41
score: 141.5
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 124..237
e-value: 5.3E-30
score: 105.7
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 242..365
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 129..238
IPR035709RutC family, YoaB-likePANTHERPTHR47328FAMILY NOT NAMEDcoord: 259..365
coord: 124..237
IPR035709RutC family, YoaB-likeCDDcd06150YjgF_YER057c_UK114_like_2coord: 133..236
e-value: 6.33247E-51
score: 163.477
IPR019897RidA, conserved sitePROSITEPS01094UPF0076coord: 342..360
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 256..364
e-value: 2.77963E-42
score: 141.157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:528923..530448 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6599.t1Ggra6599.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 528923..530448 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6599.t1 ID=Ggra6599.t1|Name=Ggra6599.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MFHTLRYDNGCLGPHSISGTDLKPDHNNVCFTLVEHKRHEERKMSPVMTQ
LRSDVRYRVHFGRGGDGGRSSPDSLHWGEKFVHPQILVIEHYFSRSPAIS
RNHLFARRQRITAVMTENVRSNPDIKRLQPGSRFNQIVVHDGVVYLAGQV
ARGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMN
AEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAALPSPAKVISTDEAA
AAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKA
IVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAK
QLPKSALVEIECVAKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006175YjgF/YER057c/UK114
IPR006056RidA
IPR035959RutC-like_sf
IPR035709YoaB-like
IPR019897RidA_CS