Ggra6599.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6599.t1
Unique NameGgra6599.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:528923..530448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705214.1
PFAMsDiphthami_syn_2,Ribonuc_L-PSP
Max annot lvl2759|Eukaryota
KEGG rclassRC00358,RC03275,RC03354
KEGG koko:K06927,ko:K09022
KEGG ReactionR03613,R11098,R11099
Evalue1e-76
EggNOG OGsCOG0251@1|root,KOG2317@2759|Eukaryota
EC3.5.99.10,6.3.1.14
Descriptionendoribonuclease L-PSP
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6599Ggra6599Gracilaria gracilis GNS1m malegenetig00000081_pilon 528923..530448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6599.t1Ggra6599.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 528923..530448 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6599.t1.stop1Ggra6599.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 528923..528925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6599.t1.CDS1Ggra6599.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 528923..529747 -
Ggra6599.t1.CDS2Ggra6599.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 529833..529844 -
Ggra6599.t1.CDS3Ggra6599.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000081_pilon 529933..529994 -
Ggra6599.t1.CDS4Ggra6599.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000081_pilon 530247..530448 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6599.t1.exon1Ggra6599.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 528923..529747 -
Ggra6599.t1.exon2Ggra6599.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 529833..529844 -
Ggra6599.t1.exon3Ggra6599.t1.exon3Gracilaria gracilis GNS1m maleexontig00000081_pilon 529933..529994 -
Ggra6599.t1.exon4Ggra6599.t1.exon4Gracilaria gracilis GNS1m maleexontig00000081_pilon 530247..530448 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6599.t1.intron1Ggra6599.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 529748..529832 -
Ggra6599.t1.intron2Ggra6599.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000081_pilon 529845..529932 -
Ggra6599.t1.intron3Ggra6599.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000081_pilon 529995..530246 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6599.t1.start1Ggra6599.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 530446..530448 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6599.t1 ID=Ggra6599.t1|Name=Ggra6599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=367bp
MFHTLRYDNGCLGPHSISGTDLKPDHNNVCFTLVEHKRHEERKMSPVMTQ
LRSDVRYRVHFGRGGDGGRSSPDSLHWGEKFVHPQILVIEHYFSRSPAIS
RNHLFARRQRITAVMTENVRSNPDIKRLQPGSRFNQIVVHDGVVYLAGQV
ARGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMN
AEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAALPSPAKVISTDEAA
AAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKA
IVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAK
QLPKSALVEIECVAKL*
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spliced messenger RNA

>Ggra6599.t1 ID=Ggra6599.t1|Name=Ggra6599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1101bp|location=Sequence derived from alignment at tig00000081_pilon:528923..530448- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCATACTTTGAGATATGATAACGGCTGTCTTGGTCCTCATTCAAT
CTCAGGCACGGATCTAAAACCAGACCACAATAATGTGTGCTTCACTCTCG
TGGAACATAAACGGCACGAAGAACGAAAGATGTCTCCAGTGATGACACAA
CTGAGGTCAGACGTGCGCTATCGCGTACATTTTGGTAGAGGTGGTGACGG
CGGCCGTTCGAGTCCGGACTCCCTACATTGGGGAGAGAAGTTTGTTCATC
CACAAATCCTCGTTATCGAACATTACTTTTCCAGATCGCCGGCGATATCT
CGGAATCATTTGTTCGCTAGGCGTCAGAGGATCACAGCTGTGATGACCGA
GAACGTTCGTTCAAATCCAGATATCAAGCGCTTGCAACCTGGCAGTCGTT
TTAATCAGATCGTCGTTCACGATGGAGTGGTATATCTAGCTGGACAAGTT
GCTCGTGGTACAGATGGTTCCGTGGCAGCACAAACGCGTGCAATTCTGGC
GAAGATAGATAGTCTACTGGAACAAGCTGGTACAGACAAGTCTCGTCTGC
TCACCACTAACATCTGGATTGCTGATATGTCAAAGTTTTCCGAAATGAAT
GCGGAATGGGATAAGTGGGTCGACAAGGATAATATGCCTGTGCGAGCGTG
TGTCCAGTCCACTCTAGCAGACAATTCCATCACCGTCGAAATTCAGGCCA
CCGCTGCATTACCATCTCCGGCGAAGGTCATAAGTACAGACGAAGCCGCT
GCAGCCGTTGGACCTTACAATCAGGGAGTTGTGGTTCACGATGGTACCGT
TTATGTTAGTGGCTGTATCGGCCTTATGCCAAGAACGGCAGTCATGGCAG
GTGATTCAGTTGAGGAGCAAACAAAGCAAGCTCTACAAAACGTGAAGGCA
ATTGTGGAAGCTGCTGGTGCCACAGTTCATGACATTGTCAAGACCACCAT
ACTACTTGACGACATTGCCGATTTTGCAGCCGTGAATGCTATCTACTCAG
AGTTCTTTGAAGGTGGGCCAGTACCGGCACGATCCTGTTTTGCCGCCAAA
CAATTGCCTAAGTCTGCGTTGGTAGAAATTGAGTGCGTGGCAAAGTTGTA
G
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protein sequence of Ggra6599.t1

>Ggra6599.t1 ID=Ggra6599.t1|Name=Ggra6599.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=367bp
MFHTLRYDNGCLGPHSISGTDLKPDHNNVCFTLVEHKRHEERKMSPVMTQ
LRSDVRYRVHFGRGGDGGRSSPDSLHWGEKFVHPQILVIEHYFSRSPAIS
RNHLFARRQRITAVMTENVRSNPDIKRLQPGSRFNQIVVHDGVVYLAGQV
ARGTDGSVAAQTRAILAKIDSLLEQAGTDKSRLLTTNIWIADMSKFSEMN
AEWDKWVDKDNMPVRACVQSTLADNSITVEIQATAALPSPAKVISTDEAA
AAVGPYNQGVVVHDGTVYVSGCIGLMPRTAVMAGDSVEEQTKQALQNVKA
IVEAAGATVHDIVKTTILLDDIADFAAVNAIYSEFFEGGPVPARSCFAAK
QLPKSALVEIECVAKL*
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mRNA from alignment at tig00000081_pilon:528923..530448-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6599.t1 ID=Ggra6599.t1|Name=Ggra6599.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1526bp|location=Sequence derived from alignment at tig00000081_pilon:528923..530448- (Gracilaria gracilis GNS1m male)
ATGTTTCATACTTTGAGATATGATAACGGCTGTCTTGGTCCTCATTCAAT
CTCAGGCACGGATCTAAAACCAGACCACAATAATGTGTGCTTCACTCTCG
TGGAACATAAACGGCACGAAGAACGAAAGATGTCTCCAGTGATGACACAA
CTGAGGTCAGACGTGCGCTATCGCGTACATTTTGGTAGAGGTGGTGACGG
CGGTATGTCCAAGATACCGCCACTGTGAGGGTGAGGCGGCCCGCTTAATG
ATGGCGCAGTCCCGGCGGGTGAGGCTCACGGCGATTCACTCAGAGAGCAG
GTGAAGCTCACTCGGCGACAAGACACTCTCAGCGACAGTGGCATGGTGGT
CCCACCTCACCCAAAACTCGTGTCACCCTGCTGGAAGTTCGAATCGAGAC
GCGTTTGCGACGATTTTTCCCTTTTTACTGTATTGCGCAGATGAACAAAC
GAAGGCCGTTCGAGTCCGGACTCCCTACATTGGGGAGAGAAGTTTGTTCA
TCCACAAATCCTCGTTGTAAGTTACGACTTCACTCCTGATACGATCCACC
TACTAGTGAGCATTATCTTCAATACCCATTGTTTCATCTCGCACGCGCAC
GCAGATCGAACATTACGTAAGATTCCGGCATACAAATGAAAGATAATAGT
TCGACGTTTGTATCATTTTTCTCACCAAACGTAACATATGGCGCCAGCAA
GTTTTCCAGATCGCCGGCGATATCTCGGAATCATTTGTTCGCTAGGCGTC
AGAGGATCACAGCTGTGATGACCGAGAACGTTCGTTCAAATCCAGATATC
AAGCGCTTGCAACCTGGCAGTCGTTTTAATCAGATCGTCGTTCACGATGG
AGTGGTATATCTAGCTGGACAAGTTGCTCGTGGTACAGATGGTTCCGTGG
CAGCACAAACGCGTGCAATTCTGGCGAAGATAGATAGTCTACTGGAACAA
GCTGGTACAGACAAGTCTCGTCTGCTCACCACTAACATCTGGATTGCTGA
TATGTCAAAGTTTTCCGAAATGAATGCGGAATGGGATAAGTGGGTCGACA
AGGATAATATGCCTGTGCGAGCGTGTGTCCAGTCCACTCTAGCAGACAAT
TCCATCACCGTCGAAATTCAGGCCACCGCTGCATTACCATCTCCGGCGAA
GGTCATAAGTACAGACGAAGCCGCTGCAGCCGTTGGACCTTACAATCAGG
GAGTTGTGGTTCACGATGGTACCGTTTATGTTAGTGGCTGTATCGGCCTT
ATGCCAAGAACGGCAGTCATGGCAGGTGATTCAGTTGAGGAGCAAACAAA
GCAAGCTCTACAAAACGTGAAGGCAATTGTGGAAGCTGCTGGTGCCACAG
TTCATGACATTGTCAAGACCACCATACTACTTGACGACATTGCCGATTTT
GCAGCCGTGAATGCTATCTACTCAGAGTTCTTTGAAGGTGGGCCAGTACC
GGCACGATCCTGTTTTGCCGCCAAACAATTGCCTAAGTCTGCGTTGGTAG
AAATTGAGTGCGTGGCAAAGTTGTAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:528923..530448-

>Ggra6599.t1 ID=Ggra6599.t1|Name=Ggra6599.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1101bp|location=Sequence derived from alignment at tig00000081_pilon:528923..530448- (Gracilaria gracilis GNS1m male)
ATGTTTCATACTTTGAGATATGATAACGGCTGTCTTGGTCCTCATTCAAT
CTCAGGCACGGATCTAAAACCAGACCACAATAATGTGTGCTTCACTCTCG
TGGAACATAAACGGCACGAAGAACGAAAGATGTCTCCAGTGATGACACAA
CTGAGGTCAGACGTGCGCTATCGCGTACATTTTGGTAGAGGTGGTGACGG
CGGCCGTTCGAGTCCGGACTCCCTACATTGGGGAGAGAAGTTTGTTCATC
CACAAATCCTCGTTATCGAACATTACTTTTCCAGATCGCCGGCGATATCT
CGGAATCATTTGTTCGCTAGGCGTCAGAGGATCACAGCTGTGATGACCGA
GAACGTTCGTTCAAATCCAGATATCAAGCGCTTGCAACCTGGCAGTCGTT
TTAATCAGATCGTCGTTCACGATGGAGTGGTATATCTAGCTGGACAAGTT
GCTCGTGGTACAGATGGTTCCGTGGCAGCACAAACGCGTGCAATTCTGGC
GAAGATAGATAGTCTACTGGAACAAGCTGGTACAGACAAGTCTCGTCTGC
TCACCACTAACATCTGGATTGCTGATATGTCAAAGTTTTCCGAAATGAAT
GCGGAATGGGATAAGTGGGTCGACAAGGATAATATGCCTGTGCGAGCGTG
TGTCCAGTCCACTCTAGCAGACAATTCCATCACCGTCGAAATTCAGGCCA
CCGCTGCATTACCATCTCCGGCGAAGGTCATAAGTACAGACGAAGCCGCT
GCAGCCGTTGGACCTTACAATCAGGGAGTTGTGGTTCACGATGGTACCGT
TTATGTTAGTGGCTGTATCGGCCTTATGCCAAGAACGGCAGTCATGGCAG
GTGATTCAGTTGAGGAGCAAACAAAGCAAGCTCTACAAAACGTGAAGGCA
ATTGTGGAAGCTGCTGGTGCCACAGTTCATGACATTGTCAAGACCACCAT
ACTACTTGACGACATTGCCGATTTTGCAGCCGTGAATGCTATCTACTCAG
AGTTCTTTGAAGGTGGGCCAGTACCGGCACGATCCTGTTTTGCCGCCAAA
CAATTGCCTAAGTCTGCGTTGGTAGAAATTGAGTGCGTGGCAAAGTTGTA
G
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