Ggra6593.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6593.t1
Unique NameGgra6593.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length392
Homology
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BLAST of Ggra6593.t1 vs. uniprot
Match: A0A1X0RRS2 (C2 NT-type domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=A0A1X0RRS2_RHIZD)

HSP 1 Score: 65.1 bits (157), Expect = 1.800e-8
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 0 
Query:   11 FAVSLTIHQLDSIPPIHQLLYVQWRAKRATPPDGRTPSLPVEPGNVIRWHFHAHFTLPIAADSADHTLLQPAPLLLLLRSERRTRWVGAAS--SFEGTVTVDLSEVAAVGFLSRNYLVQGSLLNTTLKLSIRVTHKS 145
            F++++TI  L ++P +  + +V+W+ K A    G T   P+   ++  W +  + TL     S D+ +L P  L L +  E     +G +   SF G +TV+LSE A  G +SR YL+     N+T+KLSIR+   S
Sbjct:   16 FSINVTIQDLANVPLVSGIYHVKWKLKNAEHTSGSTSRSPIRDHSIF-WGYPIN-TLAHLVISKDN-ILGPCELKLQVFQE-----IGGSKDVSFIGKLTVNLSEYAGSGLVSRRYLLDECKFNSTIKLSIRMDQVS 144
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BLAST of Ggra6593.t1 vs. uniprot
Match: A0A163JDE7 (C2 NT-type domain-containing protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JDE7_ABSGL)

HSP 1 Score: 58.2 bits (139), Expect = 5.020e-6
Identity = 39/129 (30.23%), Postives = 68/129 (52.71%), Query Frame = 0 
Query:   11 FAVSLTIHQLDSIPPIHQLLYVQWRAKRATPPDGRTPSLPVEPGNVIRWHFHAHFTLPIAADSADHTLLQPAPLLLLLRSERRTRWVGAASSFEGTVTVDLSEVAAVGFLSRNYLVQGSLLNTTLKLSI 139
            + ++L I  + +IP +    +V+WR + AT   G T   P++  + + W F +  T+     S  H +LQP  L L +  E      GAA    G++++++SE A  G ++R YL++    N+ +KLSI
Sbjct:   16 YEINLVIQDITNIPLVSGSYFVKWRLRNATHSTGVTTKEPIK-DHTVEW-FSSVTTMAELVISKQH-MLQPCELKLEIYQE--VGGTGAAKQM-GSLSINMSEYATSGSITRRYLLEECKFNSFIKLSI 138
The following BLAST results are available for this feature:
BLAST of Ggra6593.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A1X0RRS21.800e-832.85C2 NT-type domain-containing protein n=5 Tax=Rhizo... [more]
A0A163JDE75.020e-630.23C2 NT-type domain-containing protein n=1 Tax=Absid... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019448NT-type C2 domainPFAMPF10358NT-C2coord: 11..148
e-value: 4.0E-6
score: 26.6
IPR019448NT-type C2 domainPROSITEPS51840C2_NTcoord: 1..143
score: 16.538338
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..193
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..391
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
IPR039931Protein FAM102-likePANTHERPTHR21456FAMILY WITH SEQUENCE SIMILARITY 102coord: 11..237

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:481059..482234 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6593.t1Ggra6593.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 481059..482234 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6593.t1 ID=Ggra6593.t1|Name=Ggra6593.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=392bp
MRFRGAPPRVFAVSLTIHQLDSIPPIHQLLYVQWRAKRATPPDGRTPSLP
VEPGNVIRWHFHAHFTLPIAADSADHTLLQPAPLLLLLRSERRTRWVGAA
SSFEGTVTVDLSEVAAVGFLSRNYLVQGSLLNTTLKLSIRVTHKSGDKIF
RTRTLPQLSAAALANSSAPGTPVGATPSTSNTDSAQQLLLFDDDDASSSL
ERSAELPNPAKERQPSSHRTAAALPATKLPSNGSFTSAHSITAPGPASFR
SADPASTALFELVQTPSAVLESSIPNPELLQKDVYETMFQQRMRDQWPQH
IVESRVDALTAVNSIYVAISQADGIGLTTVSDTNVEADRAKLDQTLCLDH
LIESRATPDPALPALLASRRPSIRSLSVRSSSTSELKELAN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019448NT-C2
IPR039931FAM102-like