Ggra6593.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6593.t1
Unique Name	Ggra6593.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:481059..482234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2K6B0
PFAMs	NT-C2
Max annot lvl	4751\|Fungi
Evalue	3.98e-07
EggNOG OGs	28JCR@1\|root,2QRRN@2759\|Eukaryota,38DSX@33154\|Opisthokonta,3Q6V1@4751\|Fungi,1GXTX@112252\|Fungi incertae sedis
Description	N-terminal C2 in EEIG1 and EHBP1 proteins
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6593	Ggra6593	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 481059..482234 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6593.t1.start1	Ggra6593.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 481059..481061 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6593.t1.CDS1	Ggra6593.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 481059..482234 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6593.t1.exon1	Ggra6593.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 481059..482234 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6593.t1.stop1	Ggra6593.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 482232..482234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6593.t1	Ggra6593.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 481059..482234 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:481059..482234+
coding sequence from alignment at tig00000081_pilon:481059..482234+

mRNA sequence

>Ggra6593.t1 ID=Ggra6593.t1|Name=Ggra6593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=392bp
MRFRGAPPRVFAVSLTIHQLDSIPPIHQLLYVQWRAKRATPPDGRTPSLP
VEPGNVIRWHFHAHFTLPIAADSADHTLLQPAPLLLLLRSERRTRWVGAA
SSFEGTVTVDLSEVAAVGFLSRNYLVQGSLLNTTLKLSIRVTHKSGDKIF
RTRTLPQLSAAALANSSAPGTPVGATPSTSNTDSAQQLLLFDDDDASSSL
ERSAELPNPAKERQPSSHRTAAALPATKLPSNGSFTSAHSITAPGPASFR
SADPASTALFELVQTPSAVLESSIPNPELLQKDVYETMFQQRMRDQWPQH
IVESRVDALTAVNSIYVAISQADGIGLTTVSDTNVEADRAKLDQTLCLDH
LIESRATPDPALPALLASRRPSIRSLSVRSSSTSELKELAN*

spliced messenger RNA

>Ggra6593.t1 ID=Ggra6593.t1|Name=Ggra6593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000081_pilon:481059..482234+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCCGCGGCGCGCCGCCGCGCGTGTTTGCCGTGTCGTTGACCAT
TCATCAGCTGGACAGCATCCCGCCAATCCACCAGCTCCTCTACGTGCAAT
GGCGCGCCAAGCGCGCCACTCCTCCCGACGGCCGCACGCCGTCGCTGCCA
GTAGAGCCCGGAAACGTCATTCGCTGGCATTTTCACGCTCACTTCACGCT
GCCCATTGCCGCCGACTCTGCCGACCACACCTTGCTGCAGCCGGCGCCAT
TGCTGCTGCTGCTGCGCTCGGAGCGGCGCACCAGGTGGGTGGGCGCGGCT
AGTTCCTTTGAGGGCACTGTCACCGTCGACCTTTCCGAAGTCGCCGCTGT
TGGCTTTCTTTCCCGCAATTATCTCGTGCAGGGCAGTTTGTTGAACACCA
CCCTCAAGCTTTCCATCCGCGTCACGCACAAGTCCGGCGACAAGATCTTC
CGCACGCGCACGTTGCCGCAGCTCAGTGCCGCCGCGCTTGCAAACTCCTC
GGCCCCGGGCACGCCGGTTGGCGCCACGCCGAGCACGTCCAACACCGATA
GCGCACAACAGCTCTTGCTGTTTGACGATGATGACGCTTCGTCCAGTCTG
GAGCGCTCCGCCGAGCTACCCAACCCGGCAAAGGAGCGACAGCCGTCTTC
GCATCGTACTGCAGCTGCGTTGCCTGCCACCAAACTACCGTCCAACGGCT
CGTTCACATCTGCGCATTCCATCACCGCGCCGGGACCGGCTTCGTTTCGC
TCCGCTGATCCCGCGTCCACCGCGCTCTTCGAGCTCGTGCAGACGCCCAG
CGCCGTGCTGGAGAGCAGCATTCCGAACCCGGAGCTGTTGCAAAAGGACG
TTTACGAGACCATGTTTCAACAGCGCATGCGTGATCAATGGCCTCAGCAT
ATTGTTGAGTCCAGAGTTGATGCGCTCACGGCTGTCAACTCTATCTACGT
TGCCATATCTCAAGCCGATGGCATTGGTTTGACCACCGTGTCGGACACCA
ATGTCGAAGCTGACCGCGCCAAACTTGACCAAACCTTGTGTCTTGATCAC
CTCATCGAGAGTAGAGCGACGCCTGACCCCGCTCTTCCCGCGTTGCTCGC
GTCCAGACGCCCAAGCATTCGCAGTCTTTCCGTGCGATCCAGTTCCACAA
GTGAGCTCAAGGAGCTGGCCAACTAA

protein sequence of Ggra6593.t1

>Ggra6593.t1 ID=Ggra6593.t1|Name=Ggra6593.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=392bp
MRFRGAPPRVFAVSLTIHQLDSIPPIHQLLYVQWRAKRATPPDGRTPSLP
VEPGNVIRWHFHAHFTLPIAADSADHTLLQPAPLLLLLRSERRTRWVGAA
SSFEGTVTVDLSEVAAVGFLSRNYLVQGSLLNTTLKLSIRVTHKSGDKIF
RTRTLPQLSAAALANSSAPGTPVGATPSTSNTDSAQQLLLFDDDDASSSL
ERSAELPNPAKERQPSSHRTAAALPATKLPSNGSFTSAHSITAPGPASFR
SADPASTALFELVQTPSAVLESSIPNPELLQKDVYETMFQQRMRDQWPQH
IVESRVDALTAVNSIYVAISQADGIGLTTVSDTNVEADRAKLDQTLCLDH
LIESRATPDPALPALLASRRPSIRSLSVRSSSTSELKELAN*

mRNA from alignment at tig00000081_pilon:481059..482234+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6593.t1 ID=Ggra6593.t1|Name=Ggra6593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000081_pilon:481059..482234+ (Gracilaria gracilis GNS1m male)
ATGCGCTTCCGCGGCGCGCCGCCGCGCGTGTTTGCCGTGTCGTTGACCAT
TCATCAGCTGGACAGCATCCCGCCAATCCACCAGCTCCTCTACGTGCAAT
GGCGCGCCAAGCGCGCCACTCCTCCCGACGGCCGCACGCCGTCGCTGCCA
GTAGAGCCCGGAAACGTCATTCGCTGGCATTTTCACGCTCACTTCACGCT
GCCCATTGCCGCCGACTCTGCCGACCACACCTTGCTGCAGCCGGCGCCAT
TGCTGCTGCTGCTGCGCTCGGAGCGGCGCACCAGGTGGGTGGGCGCGGCT
AGTTCCTTTGAGGGCACTGTCACCGTCGACCTTTCCGAAGTCGCCGCTGT
TGGCTTTCTTTCCCGCAATTATCTCGTGCAGGGCAGTTTGTTGAACACCA
CCCTCAAGCTTTCCATCCGCGTCACGCACAAGTCCGGCGACAAGATCTTC
CGCACGCGCACGTTGCCGCAGCTCAGTGCCGCCGCGCTTGCAAACTCCTC
GGCCCCGGGCACGCCGGTTGGCGCCACGCCGAGCACGTCCAACACCGATA
GCGCACAACAGCTCTTGCTGTTTGACGATGATGACGCTTCGTCCAGTCTG
GAGCGCTCCGCCGAGCTACCCAACCCGGCAAAGGAGCGACAGCCGTCTTC
GCATCGTACTGCAGCTGCGTTGCCTGCCACCAAACTACCGTCCAACGGCT
CGTTCACATCTGCGCATTCCATCACCGCGCCGGGACCGGCTTCGTTTCGC
TCCGCTGATCCCGCGTCCACCGCGCTCTTCGAGCTCGTGCAGACGCCCAG
CGCCGTGCTGGAGAGCAGCATTCCGAACCCGGAGCTGTTGCAAAAGGACG
TTTACGAGACCATGTTTCAACAGCGCATGCGTGATCAATGGCCTCAGCAT
ATTGTTGAGTCCAGAGTTGATGCGCTCACGGCTGTCAACTCTATCTACGT
TGCCATATCTCAAGCCGATGGCATTGGTTTGACCACCGTGTCGGACACCA
ATGTCGAAGCTGACCGCGCCAAACTTGACCAAACCTTGTGTCTTGATCAC
CTCATCGAGAGTAGAGCGACGCCTGACCCCGCTCTTCCCGCGTTGCTCGC
GTCCAGACGCCCAAGCATTCGCAGTCTTTCCGTGCGATCCAGTTCCACAA
GTGAGCTCAAGGAGCTGGCCAACTAA

Coding sequence (CDS) from alignment at tig00000081_pilon:481059..482234+

>Ggra6593.t1 ID=Ggra6593.t1|Name=Ggra6593.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000081_pilon:481059..482234+ (Gracilaria gracilis GNS1m male)
ATGCGCTTCCGCGGCGCGCCGCCGCGCGTGTTTGCCGTGTCGTTGACCAT
TCATCAGCTGGACAGCATCCCGCCAATCCACCAGCTCCTCTACGTGCAAT
GGCGCGCCAAGCGCGCCACTCCTCCCGACGGCCGCACGCCGTCGCTGCCA
GTAGAGCCCGGAAACGTCATTCGCTGGCATTTTCACGCTCACTTCACGCT
GCCCATTGCCGCCGACTCTGCCGACCACACCTTGCTGCAGCCGGCGCCAT
TGCTGCTGCTGCTGCGCTCGGAGCGGCGCACCAGGTGGGTGGGCGCGGCT
AGTTCCTTTGAGGGCACTGTCACCGTCGACCTTTCCGAAGTCGCCGCTGT
TGGCTTTCTTTCCCGCAATTATCTCGTGCAGGGCAGTTTGTTGAACACCA
CCCTCAAGCTTTCCATCCGCGTCACGCACAAGTCCGGCGACAAGATCTTC
CGCACGCGCACGTTGCCGCAGCTCAGTGCCGCCGCGCTTGCAAACTCCTC
GGCCCCGGGCACGCCGGTTGGCGCCACGCCGAGCACGTCCAACACCGATA
GCGCACAACAGCTCTTGCTGTTTGACGATGATGACGCTTCGTCCAGTCTG
GAGCGCTCCGCCGAGCTACCCAACCCGGCAAAGGAGCGACAGCCGTCTTC
GCATCGTACTGCAGCTGCGTTGCCTGCCACCAAACTACCGTCCAACGGCT
CGTTCACATCTGCGCATTCCATCACCGCGCCGGGACCGGCTTCGTTTCGC
TCCGCTGATCCCGCGTCCACCGCGCTCTTCGAGCTCGTGCAGACGCCCAG
CGCCGTGCTGGAGAGCAGCATTCCGAACCCGGAGCTGTTGCAAAAGGACG
TTTACGAGACCATGTTTCAACAGCGCATGCGTGATCAATGGCCTCAGCAT
ATTGTTGAGTCCAGAGTTGATGCGCTCACGGCTGTCAACTCTATCTACGT
TGCCATATCTCAAGCCGATGGCATTGGTTTGACCACCGTGTCGGACACCA
ATGTCGAAGCTGACCGCGCCAAACTTGACCAAACCTTGTGTCTTGATCAC
CTCATCGAGAGTAGAGCGACGCCTGACCCCGCTCTTCCCGCGTTGCTCGC
GTCCAGACGCCCAAGCATTCGCAGTCTTTCCGTGCGATCCAGTTCCACAA
GTGAGCTCAAGGAGCTGGCCAACTAA