Ggra6586.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6586.t1
Unique Name	Ggra6586.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	573

Homology

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BLAST of Ggra6586.t1 vs. uniprot
Match: A0A2V3J521 (B-box zinc finger protein 19 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J521_9FLOR)

HSP 1 Score: 231 bits (590), Expect = 8.580e-65
Identity = 195/586 (33.28%), Postives = 268/586 (45.73%), Query Frame = 0

Query:    1 MTRLVRVRAICDVCSAAAATRFCASLWNVLCEAC---TCIRSR-SLHQHVALSSAIAALPFXXXXXXXXXXXXXXXXXXXXXXXXDETVHRVIPNSHCRSPLQITLRTRAVEFRPRSRSRARKRFTRAKATQPLNRARAEGAL-----------SYLDSKEHRNVSKRSCGPTPRASKVNVASKLAQQRQQPGHNAEST---RPYQVPSPPMRKPPVSNSSGLA-THSIGSSTPSSHPQPLRAKTTEQPQPIRISQAPNPGRNDLFHIDEYRLLFDSQLSQSNAHMSIDTLSFSSIPTEIAEAAKSLCEPLLITEEPNIQPMETDPLAEPESGTLDLSNILPTEPLDLSTEDSLHHVSMRPPPPSPY---APSSSV---PTSSAVYPMIRQSXXXXXXXXXXXXXXXXXXXXXKYLLNTAPXXXXXXXXXXXXXIDGGRAVDPXXXXXXXXXXXXXXXXXXXXXXCDPEL------HERGRLPRHVSEPVLPLRAAAQQHVFDEAMRRLDIDLDKHSSRDEIQMANLKELFNASDTSNVLVSEQESTSSELGRHYVIEDYDRQKEAFGMVGCLRPSQFDQTHMSSL 555
            MTRLVRVRA+CD CSAA AT +C S  +VLC  C   T   +R S HQ + L++AI ALPF                        ++TVH+  P SH R+P+Q TLR+RAV+FRP S S A     R  A  P+  A +  A+           S   SK  R+ S  +   +            +   Q P HN  +T       +P      PP S+S  ++ T +  +    S   P  +   E  QP + S    P RN LFH ++Y   FDS  + S+  ++I   +F  +PTEIA+AAKSLC+PL+I+ EP +QP+  DPLAEP+  ++DLS ++    LD   ED +    ++PP  +P    APS  +   P SS  Y                           +YLL T               I+ GR +DP                                 H   RLPRH SEP+LPLRAAAQ+HVFDEAMRRLDI   K   +DE+ + N +     +  ++     QE  + E GR  V+ D +  KE F +   L  SQ+DQ+   +L
Sbjct:    1 MTRLVRVRAVCDDCSAAPATIYCVSHGHVLCVDCDRRTHHNARLSAHQRIGLAAAITALPFCEYCDNAPATTYCETESTTLCDKCNDTVHKAAPLSHSRTPIQKTLRSRAVQFRPISTSAA---LPRCSANGPIQPAPSGPAIKSAHRPHVPSQSASPSKSRRHASNTNAHTSNNCYNPPRNDLKSSSAQSPRHNPSNTVHVMRQNLPHFTQLSPPPSSSPLVSITQTKNAYRRDSEQVPATSNYLELTQPSQPSDQ--PSRNPLFHAEDYSPFFDSHPTHSDLQLTIANPNFVPLPTEIADAAKSLCDPLIISGEPPMQPLGRDPLAEPDPNSIDLSKVVTCPSLDPDPEDCVLEEQLKPPTTTPLPTKAPSKLLKTEPHSSVDY------IHGTPQPSITVMAAAATAAAERYLLETTSPASSSCERLSNPAIECGRGLDPGGVAEAATAAAESAAAAVDIGSVPARRSIVSGRHHFARLPRHASEPILPLRAAAQKHVFDEAMRRLDIAARKPRLKDEVFIPNTRRTAVVNRPNDAGAPVQELNAHEYGRRDVLMDLETPKEEFLVFDPLDLSQYDQSDPHTL 575

The following BLAST results are available for this feature:

BLAST of Ggra6586.t1 vs. uniprot

BLAST of Ggra6586.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J521	8.580e-65	33.28	B-box zinc finger protein 19 n=1 Tax=Gracilariopsi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 53..98 e-value: 8.4E-7 score: 38.6
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 56..97 e-value: 1.1E-6 score: 28.7
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 53..98 score: 10.338243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..353
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..238

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:349364..351082 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6586.t1	Ggra6586.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000081_pilon 349364..351082 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6586.t1 ID=Ggra6586.t1|Name=Ggra6586.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=573bp
MTRLVRVRAICDVCSAAAATRFCASLWNVLCEACTCIRSRSLHQHVALSS
AIAALPFCEYCDIAPATLYCETEGATLCDKCDETVHRVIPNSHCRSPLQI
TLRTRAVEFRPRSRSRARKRFTRAKATQPLNRARAEGALSYLDSKEHRNV
SKRSCGPTPRASKVNVASKLAQQRQQPGHNAESTRPYQVPSPPMRKPPVS
NSSGLATHSIGSSTPSSHPQPLRAKTTEQPQPIRISQAPNPGRNDLFHID
EYRLLFDSQLSQSNAHMSIDTLSFSSIPTEIAEAAKSLCEPLLITEEPNI
QPMETDPLAEPESGTLDLSNILPTEPLDLSTEDSLHHVSMRPPPPSPYAP
SSSVPTSSAVYPMIRQSSNPTQSSITAAVAAAATAAAEKYLLNTAPRATA
SKERVSAATIDGGRAVDPSGLAAAATAAAAVEMTSLSTRACDPELHERGR
LPRHVSEPVLPLRAAAQQHVFDEAMRRLDIDLDKHSSRDEIQMANLKELF
NASDTSNVLVSEQESTSSELGRHYVIEDYDRQKEAFGMVGCLRPSQFDQT
HMSSLALERDVDFCAPQGSDER*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000315	Znf_B-box