Ggra6586.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6586.t1
Unique NameGgra6586.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length573
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:349364..351082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6586Ggra6586Gracilaria gracilis GNS1m malegenetig00000081_pilon 349364..351082 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6586.t1.stop1Ggra6586.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 349364..349366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6586.t1.CDS1Ggra6586.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 349364..351082 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6586.t1.exon1Ggra6586.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 349364..351082 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6586.t1.start1Ggra6586.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 351080..351082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6586.t1Ggra6586.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 349364..351082 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6586.t1 ID=Ggra6586.t1|Name=Ggra6586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp
MTRLVRVRAICDVCSAAAATRFCASLWNVLCEACTCIRSRSLHQHVALSS
AIAALPFCEYCDIAPATLYCETEGATLCDKCDETVHRVIPNSHCRSPLQI
TLRTRAVEFRPRSRSRARKRFTRAKATQPLNRARAEGALSYLDSKEHRNV
SKRSCGPTPRASKVNVASKLAQQRQQPGHNAESTRPYQVPSPPMRKPPVS
NSSGLATHSIGSSTPSSHPQPLRAKTTEQPQPIRISQAPNPGRNDLFHID
EYRLLFDSQLSQSNAHMSIDTLSFSSIPTEIAEAAKSLCEPLLITEEPNI
QPMETDPLAEPESGTLDLSNILPTEPLDLSTEDSLHHVSMRPPPPSPYAP
SSSVPTSSAVYPMIRQSSNPTQSSITAAVAAAATAAAEKYLLNTAPRATA
SKERVSAATIDGGRAVDPSGLAAAATAAAAVEMTSLSTRACDPELHERGR
LPRHVSEPVLPLRAAAQQHVFDEAMRRLDIDLDKHSSRDEIQMANLKELF
NASDTSNVLVSEQESTSSELGRHYVIEDYDRQKEAFGMVGCLRPSQFDQT
HMSSLALERDVDFCAPQGSDER*
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spliced messenger RNA

>Ggra6586.t1 ID=Ggra6586.t1|Name=Ggra6586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1719bp|location=Sequence derived from alignment at tig00000081_pilon:349364..351082- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGTCTCGTTCGCGTGCGAGCCATTTGCGACGTATGCTCCGCCGC
CGCTGCCACGCGCTTTTGCGCCTCGCTCTGGAACGTGCTCTGCGAAGCTT
GCACCTGCATTCGATCGCGATCACTTCATCAACACGTAGCGCTATCTTCG
GCCATCGCCGCATTGCCGTTTTGCGAGTATTGTGATATCGCTCCGGCCAC
CCTTTATTGCGAGACGGAAGGCGCAACGTTGTGTGATAAATGTGACGAGA
CCGTGCATAGAGTCATCCCAAATTCACACTGCCGCTCCCCACTTCAAATT
ACTCTACGCACTCGAGCTGTCGAGTTTCGCCCCAGGTCTCGGTCTAGGGC
GCGGAAGCGCTTCACAAGGGCCAAGGCAACTCAGCCCTTAAACAGAGCAC
GAGCTGAAGGCGCTCTTTCATATTTGGATTCTAAAGAACACCGTAATGTC
TCAAAGCGCTCCTGTGGCCCGACGCCGCGTGCATCCAAAGTGAACGTAGC
TTCAAAGCTGGCACAACAAAGGCAGCAGCCCGGTCACAACGCCGAAAGCA
CCCGTCCCTATCAAGTGCCTTCACCTCCCATGCGGAAGCCGCCCGTTTCC
AACAGTTCCGGATTAGCTACTCACAGTATTGGTAGCAGCACGCCATCAAG
TCATCCTCAACCACTTCGGGCTAAGACGACCGAGCAGCCGCAACCCATCC
GTATCTCGCAAGCTCCCAATCCTGGTCGCAATGATCTCTTCCACATTGAT
GAATACAGGCTTCTGTTTGACTCACAGCTCTCGCAATCTAACGCACACAT
GTCCATTGACACCCTCTCCTTCTCATCAATACCCACCGAGATCGCTGAGG
CTGCCAAATCCCTGTGTGAACCGCTTCTCATCACCGAAGAGCCAAACATT
CAACCGATGGAAACAGACCCGCTAGCAGAGCCGGAGTCAGGCACCCTTGA
TCTCAGCAACATTCTTCCTACCGAGCCTTTAGATCTGTCGACCGAAGACA
GTCTACATCACGTCAGTATGAGACCGCCGCCCCCATCCCCGTATGCACCC
TCCTCATCTGTGCCGACATCCAGTGCAGTCTACCCAATGATACGCCAAAG
CAGCAACCCAACTCAGTCCTCGATAACCGCTGCTGTAGCTGCTGCTGCGA
CAGCCGCTGCAGAGAAGTATCTATTGAACACAGCTCCTCGCGCAACTGCT
TCGAAAGAGAGAGTAAGCGCAGCTACAATCGACGGTGGTCGTGCGGTTGA
TCCAAGTGGGCTTGCCGCTGCTGCTACAGCTGCGGCGGCTGTTGAAATGA
CTTCTCTTTCAACTAGAGCTTGTGATCCAGAATTGCATGAAAGGGGTCGA
CTGCCTAGACATGTATCCGAGCCAGTTCTTCCACTTCGAGCGGCAGCGCA
ACAGCATGTGTTTGATGAAGCAATGAGACGGCTTGATATAGACCTGGATA
AACATAGCAGTCGGGATGAAATTCAGATGGCGAATCTCAAGGAACTTTTT
AACGCTTCTGATACATCGAATGTTTTGGTATCAGAACAGGAGAGCACTAG
TAGCGAGCTGGGAAGACATTATGTAATCGAAGATTATGATCGACAAAAAG
AGGCATTTGGCATGGTTGGGTGTCTTCGTCCGTCACAGTTTGATCAAACT
CACATGTCGTCGCTAGCACTCGAACGTGATGTAGATTTCTGTGCTCCTCA
AGGCTCAGATGAACGCTGA
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protein sequence of Ggra6586.t1

>Ggra6586.t1 ID=Ggra6586.t1|Name=Ggra6586.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=573bp
MTRLVRVRAICDVCSAAAATRFCASLWNVLCEACTCIRSRSLHQHVALSS
AIAALPFCEYCDIAPATLYCETEGATLCDKCDETVHRVIPNSHCRSPLQI
TLRTRAVEFRPRSRSRARKRFTRAKATQPLNRARAEGALSYLDSKEHRNV
SKRSCGPTPRASKVNVASKLAQQRQQPGHNAESTRPYQVPSPPMRKPPVS
NSSGLATHSIGSSTPSSHPQPLRAKTTEQPQPIRISQAPNPGRNDLFHID
EYRLLFDSQLSQSNAHMSIDTLSFSSIPTEIAEAAKSLCEPLLITEEPNI
QPMETDPLAEPESGTLDLSNILPTEPLDLSTEDSLHHVSMRPPPPSPYAP
SSSVPTSSAVYPMIRQSSNPTQSSITAAVAAAATAAAEKYLLNTAPRATA
SKERVSAATIDGGRAVDPSGLAAAATAAAAVEMTSLSTRACDPELHERGR
LPRHVSEPVLPLRAAAQQHVFDEAMRRLDIDLDKHSSRDEIQMANLKELF
NASDTSNVLVSEQESTSSELGRHYVIEDYDRQKEAFGMVGCLRPSQFDQT
HMSSLALERDVDFCAPQGSDER*
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mRNA from alignment at tig00000081_pilon:349364..351082-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6586.t1 ID=Ggra6586.t1|Name=Ggra6586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1719bp|location=Sequence derived from alignment at tig00000081_pilon:349364..351082- (Gracilaria gracilis GNS1m male)
ATGACTCGTCTCGTTCGCGTGCGAGCCATTTGCGACGTATGCTCCGCCGC
CGCTGCCACGCGCTTTTGCGCCTCGCTCTGGAACGTGCTCTGCGAAGCTT
GCACCTGCATTCGATCGCGATCACTTCATCAACACGTAGCGCTATCTTCG
GCCATCGCCGCATTGCCGTTTTGCGAGTATTGTGATATCGCTCCGGCCAC
CCTTTATTGCGAGACGGAAGGCGCAACGTTGTGTGATAAATGTGACGAGA
CCGTGCATAGAGTCATCCCAAATTCACACTGCCGCTCCCCACTTCAAATT
ACTCTACGCACTCGAGCTGTCGAGTTTCGCCCCAGGTCTCGGTCTAGGGC
GCGGAAGCGCTTCACAAGGGCCAAGGCAACTCAGCCCTTAAACAGAGCAC
GAGCTGAAGGCGCTCTTTCATATTTGGATTCTAAAGAACACCGTAATGTC
TCAAAGCGCTCCTGTGGCCCGACGCCGCGTGCATCCAAAGTGAACGTAGC
TTCAAAGCTGGCACAACAAAGGCAGCAGCCCGGTCACAACGCCGAAAGCA
CCCGTCCCTATCAAGTGCCTTCACCTCCCATGCGGAAGCCGCCCGTTTCC
AACAGTTCCGGATTAGCTACTCACAGTATTGGTAGCAGCACGCCATCAAG
TCATCCTCAACCACTTCGGGCTAAGACGACCGAGCAGCCGCAACCCATCC
GTATCTCGCAAGCTCCCAATCCTGGTCGCAATGATCTCTTCCACATTGAT
GAATACAGGCTTCTGTTTGACTCACAGCTCTCGCAATCTAACGCACACAT
GTCCATTGACACCCTCTCCTTCTCATCAATACCCACCGAGATCGCTGAGG
CTGCCAAATCCCTGTGTGAACCGCTTCTCATCACCGAAGAGCCAAACATT
CAACCGATGGAAACAGACCCGCTAGCAGAGCCGGAGTCAGGCACCCTTGA
TCTCAGCAACATTCTTCCTACCGAGCCTTTAGATCTGTCGACCGAAGACA
GTCTACATCACGTCAGTATGAGACCGCCGCCCCCATCCCCGTATGCACCC
TCCTCATCTGTGCCGACATCCAGTGCAGTCTACCCAATGATACGCCAAAG
CAGCAACCCAACTCAGTCCTCGATAACCGCTGCTGTAGCTGCTGCTGCGA
CAGCCGCTGCAGAGAAGTATCTATTGAACACAGCTCCTCGCGCAACTGCT
TCGAAAGAGAGAGTAAGCGCAGCTACAATCGACGGTGGTCGTGCGGTTGA
TCCAAGTGGGCTTGCCGCTGCTGCTACAGCTGCGGCGGCTGTTGAAATGA
CTTCTCTTTCAACTAGAGCTTGTGATCCAGAATTGCATGAAAGGGGTCGA
CTGCCTAGACATGTATCCGAGCCAGTTCTTCCACTTCGAGCGGCAGCGCA
ACAGCATGTGTTTGATGAAGCAATGAGACGGCTTGATATAGACCTGGATA
AACATAGCAGTCGGGATGAAATTCAGATGGCGAATCTCAAGGAACTTTTT
AACGCTTCTGATACATCGAATGTTTTGGTATCAGAACAGGAGAGCACTAG
TAGCGAGCTGGGAAGACATTATGTAATCGAAGATTATGATCGACAAAAAG
AGGCATTTGGCATGGTTGGGTGTCTTCGTCCGTCACAGTTTGATCAAACT
CACATGTCGTCGCTAGCACTCGAACGTGATGTAGATTTCTGTGCTCCTCA
AGGCTCAGATGAACGCTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:349364..351082-

>Ggra6586.t1 ID=Ggra6586.t1|Name=Ggra6586.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1719bp|location=Sequence derived from alignment at tig00000081_pilon:349364..351082- (Gracilaria gracilis GNS1m male)
ATGACTCGTCTCGTTCGCGTGCGAGCCATTTGCGACGTATGCTCCGCCGC
CGCTGCCACGCGCTTTTGCGCCTCGCTCTGGAACGTGCTCTGCGAAGCTT
GCACCTGCATTCGATCGCGATCACTTCATCAACACGTAGCGCTATCTTCG
GCCATCGCCGCATTGCCGTTTTGCGAGTATTGTGATATCGCTCCGGCCAC
CCTTTATTGCGAGACGGAAGGCGCAACGTTGTGTGATAAATGTGACGAGA
CCGTGCATAGAGTCATCCCAAATTCACACTGCCGCTCCCCACTTCAAATT
ACTCTACGCACTCGAGCTGTCGAGTTTCGCCCCAGGTCTCGGTCTAGGGC
GCGGAAGCGCTTCACAAGGGCCAAGGCAACTCAGCCCTTAAACAGAGCAC
GAGCTGAAGGCGCTCTTTCATATTTGGATTCTAAAGAACACCGTAATGTC
TCAAAGCGCTCCTGTGGCCCGACGCCGCGTGCATCCAAAGTGAACGTAGC
TTCAAAGCTGGCACAACAAAGGCAGCAGCCCGGTCACAACGCCGAAAGCA
CCCGTCCCTATCAAGTGCCTTCACCTCCCATGCGGAAGCCGCCCGTTTCC
AACAGTTCCGGATTAGCTACTCACAGTATTGGTAGCAGCACGCCATCAAG
TCATCCTCAACCACTTCGGGCTAAGACGACCGAGCAGCCGCAACCCATCC
GTATCTCGCAAGCTCCCAATCCTGGTCGCAATGATCTCTTCCACATTGAT
GAATACAGGCTTCTGTTTGACTCACAGCTCTCGCAATCTAACGCACACAT
GTCCATTGACACCCTCTCCTTCTCATCAATACCCACCGAGATCGCTGAGG
CTGCCAAATCCCTGTGTGAACCGCTTCTCATCACCGAAGAGCCAAACATT
CAACCGATGGAAACAGACCCGCTAGCAGAGCCGGAGTCAGGCACCCTTGA
TCTCAGCAACATTCTTCCTACCGAGCCTTTAGATCTGTCGACCGAAGACA
GTCTACATCACGTCAGTATGAGACCGCCGCCCCCATCCCCGTATGCACCC
TCCTCATCTGTGCCGACATCCAGTGCAGTCTACCCAATGATACGCCAAAG
CAGCAACCCAACTCAGTCCTCGATAACCGCTGCTGTAGCTGCTGCTGCGA
CAGCCGCTGCAGAGAAGTATCTATTGAACACAGCTCCTCGCGCAACTGCT
TCGAAAGAGAGAGTAAGCGCAGCTACAATCGACGGTGGTCGTGCGGTTGA
TCCAAGTGGGCTTGCCGCTGCTGCTACAGCTGCGGCGGCTGTTGAAATGA
CTTCTCTTTCAACTAGAGCTTGTGATCCAGAATTGCATGAAAGGGGTCGA
CTGCCTAGACATGTATCCGAGCCAGTTCTTCCACTTCGAGCGGCAGCGCA
ACAGCATGTGTTTGATGAAGCAATGAGACGGCTTGATATAGACCTGGATA
AACATAGCAGTCGGGATGAAATTCAGATGGCGAATCTCAAGGAACTTTTT
AACGCTTCTGATACATCGAATGTTTTGGTATCAGAACAGGAGAGCACTAG
TAGCGAGCTGGGAAGACATTATGTAATCGAAGATTATGATCGACAAAAAG
AGGCATTTGGCATGGTTGGGTGTCTTCGTCCGTCACAGTTTGATCAAACT
CACATGTCGTCGCTAGCACTCGAACGTGATGTAGATTTCTGTGCTCCTCA
AGGCTCAGATGAACGCTGA
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