Ggra6584.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6584.t1
Unique NameGgra6584.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length288
Homology
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A2V3IPV7 (THO complex subunit 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV7_9FLOR)

HSP 1 Score: 407 bits (1047), Expect = 4.890e-141
Identity = 219/290 (75.52%), Postives = 231/290 (79.66%), Query Frame = 0
Query:    1 MLDHHDSAXXXXXYPSSFRRRPIVVRDPKTGETRLVGGGRR-PASGFPPSXXXXXXXXPP--SYRNRSGGDADYDRRPGAYPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRRMQPQAPAHGANLGVRGGVRKNYYDRRGTRSSPYSEEYDEDRRADYFEGEDDDRLYSHERDSDYDRDHHMNEYDRGFDAQPGYYRRNRSEVQNDEEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL 287
            MLDHHDSA     +PSSFRRRPIVVRDPKTGETRLVGGG   PA+  P          PP   YR RSG DADYDR+   YPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRR QP A   GANLGVRGGVRKNYYDR+GTRSSPYSEEY++DRR DY                    DH MN+YDR ++ Q GYYRRNRS+VQND+EDL GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDR+GNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL
Sbjct:    6 MLDHHDSAPPPT-HPSSFRRRPIVVRDPKTGETRLVGGGPPGPAARRPNFSTASAPSQPPPSGYRYRSGFDADYDRQQNPYPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRRPQPPAQPQGANLGVRGGVRKNYYDRKGTRSSPYSEEYEDDRRPDYXXXXXXXXXXXXXXXXXXXXDHRMNDYDRPYEGQHGYYRRNRSDVQNDDEDLTGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDRDGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL 294          
BLAST of Ggra6584.t1 vs. uniprot
Match: R7Q7Q7 (THO complex subunit 4-like n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7Q7_CHOCR)

HSP 1 Score: 237 bits (604), Expect = 3.990e-73
Identity = 156/285 (54.74%), Postives = 183/285 (64.21%), Query Frame = 0
Query:   17 SFRRRPIVVRDPKTGETRLVGGGRRPASGFPPSXXXXXXXXPPSYRNRSGGDADYDRRPGAYPPFDDQGRAPIMKIVSGYRGRQIVVRDPSRR----MQPQAPAHGANLGVRGG-VRK-NYYDRRGTRSSPYSEEYDEDRR----ADYFEGEDDDR-LYSHERDSDYDRDHHMNEYDRGFDAQPGYYRRNRSEVQND---EEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL 287
            ++RRRPIVVRDPKTG+TR++ GG +  +                YR     DA           F+D   AP++KIVSGYRGRQIVVRDP++R    + PQ  A G  LGVRGG VRK NYYDRRG R + YS E   D+R    A Y+E +++DR +Y   RD  YD    +  +  G       Y RN +   N     +DL GKVV+VDNLSDDVTT GLADLF MVG VKELRLLYDR+GNPNGSADIVFQ RADAE AIK+L NVPLNNRPMRLSMGNGL
Sbjct:   80 AYRRRPIVVRDPKTGDTRVIQGGHQRGASVGVGVTYGNGAARGGYRGMD--DA---------AEFED---APVVKIVSGYRGRQIVVRDPAKRGATDINPQHVA-GGPLGVRGGGVRKTNYYDRRGPRDTSYSPERYGDKRSGRGAPYYEDDEEDRRMYGRGRDQ-YDGSQMVAAHGYGDSRYDRDYYRNANAGHNGVPAHDDLTGKVVYVDNLSDDVTTRGLADLFSMVGTVKELRLLYDRQGNPNGSADIVFQHRADAEEAIKSLHNVPLNNRPMRLSMGNGL 348          
BLAST of Ggra6584.t1 vs. uniprot
Match: THO complex subunit 4C-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B2972 (THO complex subunit 4C-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B2972)

HSP 1 Score: 72.0 bits (175), Expect = 6.260e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  208 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNG 286
            G  V++ NL   VT   + +L+  +G +K   + +DR G PNGSA++V+ RR+DA  A+K  +NV L+ RPMRL +  G
Sbjct:  103 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAVHFDRNGRPNGSAEVVYMRRSDAMLAMKKYNNVLLDGRPMRLEILGG 181          
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A0M0JT49 (Tho complex subunit 4 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JT49_9EUKA)

HSP 1 Score: 69.3 bits (168), Expect = 4.950e-10
Identity = 33/80 (41.25%), Postives = 55/80 (68.75%), Query Frame = 0
Query:  208 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL 287
            G  V V NL+ +VT+  + +LFG +GA+K + LL   +G+  G A +VF+R+ADAE A++  + VPL+ RP+++S+ + L
Sbjct:   85 GTTVKVANLAFNVTSEDIEELFGEIGALKSVSLLTKEDGSSRGMALVVFKRKADAETALEKYNGVPLDGRPLKISLQSNL 164          
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A8J2NV81 (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2NV81_9HEXA)

HSP 1 Score: 68.6 bits (166), Expect = 7.860e-10
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 0
Query:  211 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGN 285
            + + NL   V+   + +LFG VG ++   + YDR G   G AD+ F+RR DA+AAI+  D VPL+ RPM +S  N
Sbjct:  112 ITISNLHYGVSDADIIELFGEVGNIRYASVHYDRSGRSMGKADVTFERRVDAQAAIQQYDGVPLDGRPMAISWAN 186          
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A834LPE5 (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834LPE5_RHOSS)

HSP 1 Score: 68.2 bits (165), Expect = 9.130e-10
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  208 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 283
            G  +F+ NL   V+   + +LF  VG VK   + YDR G   G+A++VF RR DAEAA+K  +NV L+ +PM++ +
Sbjct:   93 GTKLFISNLDYGVSGEDVKELFAEVGDVKRYSIHYDRSGRSKGTAEVVFSRRKDAEAAVKRYNNVQLDGKPMKIEI 168          
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A2I4DVX9 (THO complex subunit 4D-like n=3 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4DVX9_JUGRE)

HSP 1 Score: 68.6 bits (166), Expect = 1.040e-9
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 0
Query:  208 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 283
            G  +++ NL   VT   + +LF  +G +K   + YD+ G PNGSA++V+ RR+DA AA+K  +NV L+ +PMR+ +
Sbjct:   95 GTKLYISNLDYGVTNEDIRELFCEIGDLKRYAVHYDKNGRPNGSAEVVYTRRSDAVAALKRYNNVLLDGKPMRIEI 170          
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A396IQW2 (Putative chromatin target of PRMT1 protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IQW2_MEDTR)

HSP 1 Score: 65.9 bits (159), Expect = 3.510e-9
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 0
Query:  211 VFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 283
            ++V NL   VT   + +LF  +G +K   + YD+ G+P GSA++V+ RR+DA AA+K  +NV L+ +PM++ +
Sbjct:   31 LYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEI 103          
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A834HD54 (RRM domain-containing protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834HD54_RHOSS)

HSP 1 Score: 66.2 bits (160), Expect = 3.780e-9
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  208 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 283
            G  ++V NL   V+   + +LF  VG +K   + YDR G   G+A++VF RR DA+AA+K  +NV L+ +PM++ +
Sbjct:   82 GTKLYVSNLDYGVSNDDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVFSRRQDAQAAVKRYNNVQLDGKPMKIEV 157          
BLAST of Ggra6584.t1 vs. uniprot
Match: A0A7J0GR35 (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0GR35_9ERIC)

HSP 1 Score: 65.1 bits (157), Expect = 4.390e-9
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 0
Query:  208 GKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNGSADIVFQRRADAEAAIKTLDNVPLNNRPMRLSM 283
            G  +++ NL   V+   + +LF  VG +K   + YDR G   G+A+IV+ RR DA+AA+K  +NV L+ +PM++ +
Sbjct:   81 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEIVYSRRQDAQAAVKRYNNVQLDGKPMKIEI 156          
The following BLAST results are available for this feature:
BLAST of Ggra6584.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPV74.890e-14175.52THO complex subunit 4C n=1 Tax=Gracilariopsis chor... [more]
R7Q7Q73.990e-7354.74THO complex subunit 4-like n=1 Tax=Chondrus crispu... [more]
THO complex subunit 4C-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI00053B29726.260e-1141.77THO complex subunit 4C-like n=3 Tax=Camelina sativ... [more]
A0A0M0JT494.950e-1041.25Tho complex subunit 4 n=1 Tax=Chrysochromulina tob... [more]
A0A8J2NV817.860e-1042.67Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A834LPE59.130e-1042.11RRM domain-containing protein n=2 Tax=Rhododendron... [more]
A0A2I4DVX91.040e-940.79THO complex subunit 4D-like n=3 Tax=Juglandaceae T... [more]
A0A396IQW23.510e-939.73Putative chromatin target of PRMT1 protein n=1 Tax... [more]
A0A834HD543.780e-939.47RRM domain-containing protein n=2 Tax=Rhododendron... [more]
A0A7J0GR354.390e-938.16RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 210..282
e-value: 3.3E-15
score: 66.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 211..279
e-value: 1.2E-12
score: 47.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 209..286
score: 15.050424
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 133..286
e-value: 4.5E-19
score: 70.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..152
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 109..283
NoneNo IPR availableCDDcd12418RRM_Aly_REF_likecoord: 210..283
e-value: 7.44316E-21
score: 82.2627
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 194..284

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:342894..343757 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6584.t1Ggra6584.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 342894..343757 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6584.t1 ID=Ggra6584.t1|Name=Ggra6584.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MLDHHDSAAPPPPYPSSFRRRPIVVRDPKTGETRLVGGGRRPASGFPPSS
AAPSPSAPPSYRNRSGGDADYDRRPGAYPPFDDQGRAPIMKIVSGYRGRQ
IVVRDPSRRMQPQAPAHGANLGVRGGVRKNYYDRRGTRSSPYSEEYDEDR
RADYFEGEDDDRLYSHERDSDYDRDHHMNEYDRGFDAQPGYYRRNRSEVQ
NDEEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNG
SADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf