Ggra6584.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6584.t1
Unique Name	Ggra6584.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000081_pilon	contig	tig00000081_pilon:342894..343757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	90675.XP_010415171.1
PFAMs	FoP_duplication,RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12881
KEGG Pathway	ko03013,ko03015,ko03040,ko05168,map03013,map03015,map03040,map05168
KEGG Module	M00406,M00430
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
Evalue	1.06e-11
EggNOG OGs	KOG0533@1\|root,KOG0533@2759\|Eukaryota,37MMS@33090\|Viridiplantae,3GG6X@35493\|Streptophyta,3HXVP@3699\|Brassicales
Description	Tho complex subunit
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6584	Ggra6584	Gracilaria gracilis GNS1m male	gene	tig00000081_pilon 342894..343757 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6584.t1.start1	Ggra6584.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000081_pilon 342894..342896 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6584.t1.CDS1	Ggra6584.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000081_pilon 342894..343757 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6584.t1.exon1	Ggra6584.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000081_pilon 342894..343757 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6584.t1.stop1	Ggra6584.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000081_pilon 343755..343757 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6584.t1	Ggra6584.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000081_pilon 342894..343757 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000081_pilon:342894..343757+
coding sequence from alignment at tig00000081_pilon:342894..343757+

mRNA sequence

>Ggra6584.t1 ID=Ggra6584.t1|Name=Ggra6584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=288bp
MLDHHDSAAPPPPYPSSFRRRPIVVRDPKTGETRLVGGGRRPASGFPPSS
AAPSPSAPPSYRNRSGGDADYDRRPGAYPPFDDQGRAPIMKIVSGYRGRQ
IVVRDPSRRMQPQAPAHGANLGVRGGVRKNYYDRRGTRSSPYSEEYDEDR
RADYFEGEDDDRLYSHERDSDYDRDHHMNEYDRGFDAQPGYYRRNRSEVQ
NDEEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNG
SADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL*

spliced messenger RNA

>Ggra6584.t1 ID=Ggra6584.t1|Name=Ggra6584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000081_pilon:342894..343757+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGACCACCACGATTccgccgcgccgccgccgccgtacccgtcctc
gttccgtcgccgccCCATAGTCGTGCGAGACCCCAAGACCGGCGAGACGC
GCCTTGTCGGCGGTGGTAGGCGCCCTGCTTCGGGATTTCCGCCTTCGTCG
GCTGCGCCGTCGCCGTCTGCGCCTCCGTCGTATCGTAATCGTTCCGGAGG
CGACGCTGATTATGACCGGCGTCCCGGCGCTTACCCCCCGTTCGATGACC
AGGGCCGCGCGCCGATCATGAAGATTGTGTCGGGTTATCGTGGCCGACAG
ATTGTCGTGCGTGACCCTTCGCGGAGGATGCAGCCGCAGGCGCCGGCTCA
TGGAGCTAATTTGGGCGTCCGCGGCGGCGTCAGGAAGAACTATTATGACC
GGAGGGGCACTAGATCGTCGCCGTATTCCGAGGAGTATGACGAGGATCGA
CGCGCTGATTATTTCGAGGGGGAGGATGATGATCGATTGTACTCGCATGA
AAGGGATAGCGATTATGATAGAGATCATCATATGAACGAATATGACCGCG
GCTTTGACGCGCAACCCGGCTATTACAGGAGGAATCGCTCCGAGGTGCAG
AACGATGAGGAGGATCTTGCAGGAAAGGTTGTATTTGTGGACAATCTTAG
TGACGATGTGACTACTACCGGTCTGGCGGATTTGTTTGGAATGGTTGGCG
CTGTCAAAGAGCTTCGTCTCTTGTACGATCGTGAGGGCAACCCTAATGGT
TCGGCGGACATCGTTTTCCAGAGACGCGCCGATGCGGAAGCCGCTATCAA
GACTCTAGATAACGTACCGCTAAATAATCGCCCTATGCGTCTTAGCATGG
GTAATGGACTCTGA

protein sequence of Ggra6584.t1

>Ggra6584.t1 ID=Ggra6584.t1|Name=Ggra6584.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=288bp
MLDHHDSAAPPPPYPSSFRRRPIVVRDPKTGETRLVGGGRRPASGFPPSS
AAPSPSAPPSYRNRSGGDADYDRRPGAYPPFDDQGRAPIMKIVSGYRGRQ
IVVRDPSRRMQPQAPAHGANLGVRGGVRKNYYDRRGTRSSPYSEEYDEDR
RADYFEGEDDDRLYSHERDSDYDRDHHMNEYDRGFDAQPGYYRRNRSEVQ
NDEEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPNG
SADIVFQRRADAEAAIKTLDNVPLNNRPMRLSMGNGL*

mRNA from alignment at tig00000081_pilon:342894..343757+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6584.t1 ID=Ggra6584.t1|Name=Ggra6584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=864bp|location=Sequence derived from alignment at tig00000081_pilon:342894..343757+ (Gracilaria gracilis GNS1m male)
ATGCTTGACCACCACGATTccgccgcgccgccgccgccgtacccgtcctc
gttccgtcgccgccCCATAGTCGTGCGAGACCCCAAGACCGGCGAGACGC
GCCTTGTCGGCGGTGGTAGGCGCCCTGCTTCGGGATTTCCGCCTTCGTCG
GCTGCGCCGTCGCCGTCTGCGCCTCCGTCGTATCGTAATCGTTCCGGAGG
CGACGCTGATTATGACCGGCGTCCCGGCGCTTACCCCCCGTTCGATGACC
AGGGCCGCGCGCCGATCATGAAGATTGTGTCGGGTTATCGTGGCCGACAG
ATTGTCGTGCGTGACCCTTCGCGGAGGATGCAGCCGCAGGCGCCGGCTCA
TGGAGCTAATTTGGGCGTCCGCGGCGGCGTCAGGAAGAACTATTATGACC
GGAGGGGCACTAGATCGTCGCCGTATTCCGAGGAGTATGACGAGGATCGA
CGCGCTGATTATTTCGAGGGGGAGGATGATGATCGATTGTACTCGCATGA
AAGGGATAGCGATTATGATAGAGATCATCATATGAACGAATATGACCGCG
GCTTTGACGCGCAACCCGGCTATTACAGGAGGAATCGCTCCGAGGTGCAG
AACGATGAGGAGGATCTTGCAGGAAAGGTTGTATTTGTGGACAATCTTAG
TGACGATGTGACTACTACCGGTCTGGCGGATTTGTTTGGAATGGTTGGCG
CTGTCAAAGAGCTTCGTCTCTTGTACGATCGTGAGGGCAACCCTAATGGT
TCGGCGGACATCGTTTTCCAGAGACGCGCCGATGCGGAAGCCGCTATCAA
GACTCTAGATAACGTACCGCTAAATAATCGCCCTATGCGTCTTAGCATGG
GTAATGGACTCTGA

Coding sequence (CDS) from alignment at tig00000081_pilon:342894..343757+

>Ggra6584.t1 ID=Ggra6584.t1|Name=Ggra6584.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=864bp|location=Sequence derived from alignment at tig00000081_pilon:342894..343757+ (Gracilaria gracilis GNS1m male)
ATGCTTGACCACCACGATTccgccgcgccgccgccgccgtacccgtcctc
gttccgtcgccgccCCATAGTCGTGCGAGACCCCAAGACCGGCGAGACGC
GCCTTGTCGGCGGTGGTAGGCGCCCTGCTTCGGGATTTCCGCCTTCGTCG
GCTGCGCCGTCGCCGTCTGCGCCTCCGTCGTATCGTAATCGTTCCGGAGG
CGACGCTGATTATGACCGGCGTCCCGGCGCTTACCCCCCGTTCGATGACC
AGGGCCGCGCGCCGATCATGAAGATTGTGTCGGGTTATCGTGGCCGACAG
ATTGTCGTGCGTGACCCTTCGCGGAGGATGCAGCCGCAGGCGCCGGCTCA
TGGAGCTAATTTGGGCGTCCGCGGCGGCGTCAGGAAGAACTATTATGACC
GGAGGGGCACTAGATCGTCGCCGTATTCCGAGGAGTATGACGAGGATCGA
CGCGCTGATTATTTCGAGGGGGAGGATGATGATCGATTGTACTCGCATGA
AAGGGATAGCGATTATGATAGAGATCATCATATGAACGAATATGACCGCG
GCTTTGACGCGCAACCCGGCTATTACAGGAGGAATCGCTCCGAGGTGCAG
AACGATGAGGAGGATCTTGCAGGAAAGGTTGTATTTGTGGACAATCTTAG
TGACGATGTGACTACTACCGGTCTGGCGGATTTGTTTGGAATGGTTGGCG
CTGTCAAAGAGCTTCGTCTCTTGTACGATCGTGAGGGCAACCCTAATGGT
TCGGCGGACATCGTTTTCCAGAGACGCGCCGATGCGGAAGCCGCTATCAA
GACTCTAGATAACGTACCGCTAAATAATCGCCCTATGCGTCTTAGCATGG
GTAATGGACTCTGA