Ggra6562.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6562.t1
Unique NameGgra6562.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Homology
BLAST of Ggra6562.t1 vs. uniprot
Match: A0A2V3ICW4 (DUF1775 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICW4_9FLOR)

HSP 1 Score: 218 bits (555), Expect = 3.380e-70
Identity = 109/163 (66.87%), Postives = 129/163 (79.14%), Query Frame = 0
Query:    3 CTKLFVVQLVVLFAAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKM-RVTVEQDTTWRILINKNAEDDEHVTSVTYLGFLPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGNGTRLRYPAPYVNVTAGESSGH 164
            CT LFV     L +A +AHV ITP EVPAGKSSIIQLRVSHDCGDETIGTTNFT+V+P KM RVTVE DT W ILI+K+A+D+++V SVT+LGFLPDGFYKLF +R+R P+E  G++L+F SYQDCHNQGTSLAW+ IP  +    RYPAP+V V     SGH
Sbjct:    8 CTALFV-----LLSAAYAHVSITPKEVPAGKSSIIQLRVSHDCGDETIGTTNFTVVLPSKMARVTVELDTAWNILIHKHAQDEDYVQSVTFLGFLPDGFYKLFAMRIRFPDEV-GQKLYFRSYQDCHNQGTSLAWDEIPCDHNPDPRYPAPHVTVVNATESGH 164          
BLAST of Ggra6562.t1 vs. uniprot
Match: A0A2V3ICW9 (DUF1775 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICW9_9FLOR)

HSP 1 Score: 217 bits (553), Expect = 6.820e-70
Identity = 102/146 (69.86%), Postives = 121/146 (82.88%), Query Frame = 0
Query:   20 AHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKMR-VTVEQDTTWRILINKNAEDDEHVTSVTYLGFLPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGNGTRLRYPAPYVNVTAGESSGH 164
            AHVKITPAEVPA KSSIIQLRVSHDCGDET+GTTNFT +MPMKM+ V+VE DT W+ILINK+ ED+++V SVT+LGFLPDGFYKLFG+R+R P+  AGE+L+F SYQDCHNQG SLAW+ I   +  + RYPAPYV +     SGH
Sbjct:   19 AHVKITPAEVPANKSSIIQLRVSHDCGDETVGTTNFTFIMPMKMKYVSVELDTAWKILINKDEEDEDYVRSVTFLGFLPDGFYKLFGVRMRFPDLPAGEKLYFKSYQDCHNQGASLAWDQIATDDNPKPRYPAPYVTLVEPTESGH 164          
BLAST of Ggra6562.t1 vs. uniprot
Match: A0A1X6NT16 (DUF1775 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NT16_PORUM)

HSP 1 Score: 103 bits (256), Expect = 4.510e-24
Identity = 56/157 (35.67%), Postives = 83/157 (52.87%), Query Frame = 0
Query:   16 AAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKM-RVTVEQDTTWRI----------LINKNAEDDEHVTSVTYLGFLPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNG--NGTRLRYPAPYVNVTAG 159
            A V  HV I P + P     + ++R+ HDCGD+T+GT+N T+ +P  +  V  EQ   W            L++      E + + T++GFLPDG Y+ FGL V++  +A G  L++ + QDCH       W+ IP    N TRL +PAP V +  G
Sbjct:   83 APVVGHVTINPKKAPTSGHLLFKIRLPHDCGDKTVGTSNITVTLPPGVVSVKQEQVAGWLAIHKMKTLDPPLVSGGRSYTETMETATWVGFLPDGMYREFGLSVKLLPQADGTVLYWKAVQDCHGGEAPRVWDEIPTSPCNATRLAHPAPKVELIEG 239          
BLAST of Ggra6562.t1 vs. uniprot
Match: YcnI family protein n=1 Tax=Corynebacterium cyclohexanicum TaxID=322009 RepID=UPI001E5822B8 (YcnI family protein n=1 Tax=Corynebacterium cyclohexanicum TaxID=322009 RepID=UPI001E5822B8)

HSP 1 Score: 66.6 bits (161), Expect = 3.120e-10
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 0
Query:   17 AVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKM--------------RVTVEQDTTWRILINKNAEDDEHVTSVTYLGFLP-DGFYK-LFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIP-NGNG-TRLRYPAPYVNVTAGESS 162
            A  AHV ITP+   AG SS++ + V H CGD    TT   I +P ++              +VT + D+  ++    +    +  + V Y    P D   +  F L V++P +AAG+ L+FP+ Q C    T   W+ IP  G G   ++ PAP V VTA +++
Sbjct:   31 AASAHVGITPSSTDAGASSLLTIAVPHGCGDSP--TTKVAISLPAELVDAQPTVNANWTVEKVTQKLDSPQKLADGSSVT--QRTSQVVYTAKTPLDSHLRDTFVLSVKLPADAAGKTLYFPTLQTCEQGSTD--WKEIPAEGAGHDSVKSPAPSVTVTAAKAA 188          
BLAST of Ggra6562.t1 vs. uniprot
Match: YcnI family protein n=1 Tax=Brevibacterium yomogidense TaxID=946573 RepID=UPI0018E00CD7 (YcnI family protein n=1 Tax=Brevibacterium yomogidense TaxID=946573 RepID=UPI0018E00CD7)

HSP 1 Score: 65.9 bits (159), Expect = 5.200e-10
Identity = 50/155 (32.26%), Postives = 72/155 (46.45%), Query Frame = 0
Query:   20 AHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKMRV------------TVEQDTTWRILINKNAEDDEHVTSVTYLGF--LPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIP-NGNGT-RLRYPAPYVNVTA 158
            AHV +TP+   AG  ++++  + H C   +  TT  +I +P  +              TVE+      + +   E  E +  V Y     LPD       L +R+PEEAAG+ L+FP+ Q C  +G   AW   P +G  T  L  PAP V VTA
Sbjct:   33 AHVGVTPSNTEAGSYTVLEFGIPHGCDGSS--TTEVSIQIPEGIDAVTPTRNAFYSVNTVEETLDAPAVDSHGEEVSERIAEVVYTAVDPLPDDQRDTLELSLRLPEEAAGQTLYFPTVQTC--EGDEAAWVQKPADGQDTSELDMPAPEVVVTA 183          
BLAST of Ggra6562.t1 vs. uniprot
Match: YcnI family protein n=1 Tax=Sinomonas sp. KCTC 49339 TaxID=2769422 RepID=UPI0019CA7313 (YcnI family protein n=1 Tax=Sinomonas sp. KCTC 49339 TaxID=2769422 RepID=UPI0019CA7313)

HSP 1 Score: 64.3 bits (155), Expect = 2.170e-9
Identity = 52/169 (30.77%), Postives = 75/169 (44.38%), Query Frame = 0
Query:   17 AVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKM---RVTVEQDTTWRILINK---------NAEDDEHVTSVTYLGFLP--DGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGNGTR--LRYPAPYVNVT-----AGESSGH 164
            A  AHV ITP+   AG SS++ + V H CG+    TT   I +P ++   + TV  + T   ++ K          A   +  + V Y    P        F L V++P +AAG+ L+FP+ Q C    T   W  IP        ++ PAP V V      AGE + H
Sbjct:   31 AASAHVGITPSSTDAGSSSLLTVAVPHGCGESP--TTKVAISLPAELVDAQPTVNANWTVEKVVQKLDAPQKLADGASVTQRTSQVVYTAKTPLESHLRDTFVLSVKLPADAAGKTLYFPTLQTCEKGSTD--WNEIPAAGAAHDSVKSPAPSVTVAGAKAPAGEHAEH 195          
BLAST of Ggra6562.t1 vs. uniprot
Match: YcnI family protein n=1 Tax=Massilia sp. DM-R-R2A-13 TaxID=2899220 RepID=UPI001E4AE9B7 (YcnI family protein n=1 Tax=Massilia sp. DM-R-R2A-13 TaxID=2899220 RepID=UPI001E4AE9B7)

HSP 1 Score: 62.4 bits (150), Expect = 2.890e-9
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 0
Query:   14 LFAAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKMRVTVEQDTTWRILINKNAEDDEHVTSVTYLGF-LPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGNGTRLRYPAPYVNVTAGESS 162
            L A   AHV +      AG    +  RV H C  E   T   T+V+P       E  +T + +  +  + D     + + G  LPD FY  F ++V++ +EA   + +F   Q C     S+AW+ +P+G+GT+L+ PAP ++V   E++
Sbjct:   12 LAATAHAHVTLEQRSATAGSYQKLTFRVGHGC--EGSATRAITVVLP-------EGVSTAKPMPKQGWKIDISPQKIRWTGGPLPDDFYDEFTMQVKLSQEAG--KRYFKVVQTCMKG--SMAWDQLPDGSGTKLKAPAPVLDVQPAEAT 148          
BLAST of Ggra6562.t1 vs. uniprot
Match: YcnI family protein n=1 Tax=Glutamicibacter arilaitensis TaxID=256701 RepID=UPI001868FB9B (YcnI family protein n=1 Tax=Glutamicibacter arilaitensis TaxID=256701 RepID=UPI001868FB9B)

HSP 1 Score: 61.2 bits (147), Expect = 2.830e-8
Identity = 52/165 (31.52%), Postives = 75/165 (45.45%), Query Frame = 0
Query:   16 AAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKMR-VTVEQDTTWRILINKNAEDD-----------EHVTSVTYLGF--LPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIP--NGNGTRLRYPAPYVNVTAGESSGH 164
            AA  AHV +      AG  S++ + V H C      TT   I +P  +  VT  +++ + +       D+           E V  V Y     LP     +F L +++PE+AAGE L+FP+ Q C  +G S AW  IP    +   L  P+P V VTA   +GH
Sbjct:   31 AAAQAHVTVNADTAAAGAYSVLTVSVPHGCDGSA--TTKVAIQIPDGINAVTPTRNSFYTVEKTMEQLDEPITDSHGNEVTERVAEVVYTASTPLPADQRDVFELSLQLPEDAAGETLYFPTVQSCE-EGES-AWVQIPADGQDPHELELPSPAVEVTAASDAGH 191          
BLAST of Ggra6562.t1 vs. uniprot
Match: YcnI family protein n=1 Tax=Glycomyces arizonensis TaxID=256035 RepID=UPI000422DA14 (YcnI family protein n=1 Tax=Glycomyces arizonensis TaxID=256035 RepID=UPI000422DA14)

HSP 1 Score: 60.8 bits (146), Expect = 3.800e-8
Identity = 48/160 (30.00%), Postives = 69/160 (43.12%), Query Frame = 0
Query:   20 AHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKMR-VTVEQDTTW---RILIN--------KNAEDDEHVTSVTYLGF--LPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGN--GTRLRYPAPYVNVTAGESSG 163
            AHV I      AG  +++ + V H C  E   TT   + +P  +  VT   +  W   +++++           E  E V  + Y     LPDG    F L +R+PEE AG+ L+FP  Q C        W  IP        L  PAP + VTA + +G
Sbjct:   33 AHVTIAGDNTVAGSYTLLTVSVPHGCDGEA--TTQIAVQVPEPINAVTPSVNPNWEVEKVMVDLPEPITDAHGNELTERVDQIVYTADTPLPDGLRDAFELSLRLPEETAGQTLYFPVVQTCGE--AEHPWIEIPTDGQAADELESPAPSITVTAADEAG 188          
BLAST of Ggra6562.t1 vs. uniprot
Match: YcnI family protein n=1 Tax=Kocuria sp. 36 TaxID=1415402 RepID=UPI00101BE357 (YcnI family protein n=1 Tax=Kocuria sp. 36 TaxID=1415402 RepID=UPI00101BE357)

HSP 1 Score: 60.8 bits (146), Expect = 3.840e-8
Identity = 52/159 (32.70%), Postives = 71/159 (44.65%), Query Frame = 0
Query:   16 AAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETIGTTNFTIVMPMKM-RVTVEQDTTWRILINK-------NAEDDEHVTS----VTYLGF--LPDGFYKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIP--NGNGTRLRYPAPYVNVTA 158
            +A  AHV +TP    AG  S++   V H C  +   T    I MP  +  VT  ++  + + +         N  D   VT     V Y     LPDG    F L  ++P+ AAG+ L FP+ Q C N G S AW  IP    +   L  P+P + VTA
Sbjct:   37 SAANAHVTVTPDTTEAGAYSVLTFSVPHGC--DGAATNKVAIQMPQGIDAVTPTRNPFYSVEVKNEKLDTPINDSDGNEVTERASEVVYKANTPLPDGQRDTFELSAKLPDNAAGKTLNFPTVQTCEN-GES-AWVQIPAKGQDADELELPSPQIKVTA 191          
The following BLAST results are available for this feature:
BLAST of Ggra6562.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A2V3ICW43.380e-7066.87DUF1775 domain-containing protein n=1 Tax=Gracilar... [more]
A0A2V3ICW96.820e-7069.86DUF1775 domain-containing protein n=1 Tax=Gracilar... [more]
A0A1X6NT164.510e-2435.67DUF1775 domain-containing protein n=1 Tax=Porphyra... [more]
YcnI family protein n=1 Tax=Corynebacterium cyclohexanicum TaxID=322009 RepID=UPI001E5822B83.120e-1031.71YcnI family protein n=1 Tax=Corynebacterium cycloh... [more]
YcnI family protein n=1 Tax=Brevibacterium yomogidense TaxID=946573 RepID=UPI0018E00CD75.200e-1032.26YcnI family protein n=1 Tax=Brevibacterium yomogid... [more]
YcnI family protein n=1 Tax=Sinomonas sp. KCTC 49339 TaxID=2769422 RepID=UPI0019CA73132.170e-930.77YcnI family protein n=1 Tax=Sinomonas sp. KCTC 493... [more]
YcnI family protein n=1 Tax=Massilia sp. DM-R-R2A-13 TaxID=2899220 RepID=UPI001E4AE9B72.890e-930.00YcnI family protein n=1 Tax=Massilia sp. DM-R-R2A-... [more]
YcnI family protein n=1 Tax=Glutamicibacter arilaitensis TaxID=256701 RepID=UPI001868FB9B2.830e-831.52YcnI family protein n=1 Tax=Glutamicibacter arilai... [more]
YcnI family protein n=1 Tax=Glycomyces arizonensis TaxID=256035 RepID=UPI000422DA143.800e-830.00YcnI family protein n=1 Tax=Glycomyces arizonensis... [more]
YcnI family protein n=1 Tax=Kocuria sp. 36 TaxID=1415402 RepID=UPI00101BE3573.840e-832.70YcnI family protein n=1 Tax=Kocuria sp. 36 TaxID=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038507YcnI-like superfamilyGENE3D2.60.40.2230coord: 19..164
e-value: 4.8E-25
score: 90.4
IPR012533YcnI-likePFAMPF07987DUF1775coord: 21..156
e-value: 1.1E-17
score: 64.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:275706..276200 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6562.t1Ggra6562.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 275706..276200 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6562.t1 ID=Ggra6562.t1|Name=Ggra6562.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MVCTKLFVVQLVVLFAAVFAHVKITPAEVPAGKSSIIQLRVSHDCGDETI
GTTNFTIVMPMKMRVTVEQDTTWRILINKNAEDDEHVTSVTYLGFLPDGF
YKLFGLRVRIPEEAAGEQLFFPSYQDCHNQGTSLAWEMIPNGNGTRLRYP
APYVNVTAGESSGH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038507YcnI-like_sf
IPR012533YcnI-like